mRNA_Ecto-sp13_S_contig1668.4788.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1668.4788.1
Unique NamemRNA_Ecto-sp13_S_contig1668.4788.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A7S2RSL0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSL0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.500e-38
Identity = 67/103 (65.05%), Postives = 89/103 (86.41%), Query Frame = 1
Query:    7 RAIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
            ++IWI+KP ASSCGRGIR+I++G +  +  +K  +VQRY+  P LI+G KFDLRLYV++TS++PLR+YLFE GLVRFST +Y+L+NL+SRFTHLTNYS+NKKS
Sbjct:  212 KSIWIIKPSASSCGRGIRLIHQGNLNTLPSNKAAVVQRYVERPYLINGHKFDLRLYVVLTSVDPLRIYLFEHGLVRFSTHKYTLKNLKSRFTHLTNYSVNKKS 314          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A5D6Y182_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y182_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.280e-36
Identity = 65/100 (65.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:   10 AIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINK 309
            +IWI+KPPAS+CGRGIRV+    V GV++ K+ +VQRY+ +P+L+DG KFDLRLYV+VTS++PLR+YLF EG+ RF T  YSL NL+SRF+HLTNYS+NK
Sbjct:  304 SIWILKPPASACGRGIRVLASKDVDGVARDKRYVVQRYLASPLLLDGFKFDLRLYVVVTSVDPLRIYLFNEGIARFCTSTYSLANLKSRFSHLTNYSVNK 403          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: K3X5F4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5F4_GLOUD)

HSP 1 Score: 138 bits (347), Expect = 7.760e-36
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   10 AIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINK 309
            +IWI+KPPAS+CGRGIRVI    V  +SK +K +VQRYI  P+L+DG KFDLR+Y LVTS++PLR+YLF+EG+ RF T  YSL  L++RF+HLTNYS+NK
Sbjct:  289 SIWILKPPASACGRGIRVITSKDVDSISKDRKYVVQRYIAQPLLLDGYKFDLRIYTLVTSVDPLRIYLFQEGIARFCTNAYSLEKLKNRFSHLTNYSVNK 388          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A7S1GD72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD72_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.070e-34
Identity = 62/107 (57.94%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 EPRAIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYS--LRNLRSRFTHLTNYSINKKS 315
            +P+ +WI+KP ASSCGRGIRV++      + + K  L Q+Y+ +P LIDG+KFDLR+YVLVT  +PLRVYLF +GLVRF T++YS  ++N+++RF HLTNYS+NKKS
Sbjct:  213 DPKTLWILKPCASSCGRGIRVVSHAAGSKIPRGKPYLAQKYVRHPFLIDGKKFDLRIYVLVTCFDPLRVYLFHDGLVRFCTEKYSTAMKNIKNRFAHLTNYSVNKKS 319          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A7S3HDX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDX9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.410e-34
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   13 IWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
            +WIVKP ASSCG+GI+V+       + K KK +VQRY+  P LIDGRKFDLR+YVLV+ ++PLRVY+ +EGL R ST +Y+L+NL + F HLTNYSINK +
Sbjct:   63 MWIVKPCASSCGQGIKVMTGQQAAALPKKKKAVVQRYLARPYLIDGRKFDLRIYVLVSGVDPLRVYIHDEGLTRISTAKYTLKNLTNNFAHLTNYSINKNA 163          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A7S3ZS96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZS96_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.870e-34
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 EPRAIWIVKPPASSCGRGIRVINKGGV--GGVSKSKKGLVQRYIHNPML-IDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
            +  A+WIVKPPASSCGRGIR+     +  G + K KK +VQRY+  P L ++GRKFDLRLY LVTS++PL VY+ E+GLVRFST  Y++RNLR R+ HLTNYS+NKKS
Sbjct:  309 DKHAVWIVKPPASSCGRGIRLATSRELTAGTLPKEKKYVVQRYVDAPFLGVNGRKFDLRLYALVTSVDPLVVYVHEDGLVRFSTHAYTMRNLRCRYVHLTNYSVNKKS 416          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A6G0XNR5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNR5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.410e-33
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 EPRAIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
             P A+WI+KPP   CG+GI++I  G        K+ + QRYI+NP LI+G KFD+RLYVLVTS +PLRVYLF+ GLVRF T++YS +++++RF HLTNYSINKK+
Sbjct:   60 HPNALWILKPPNQCCGQGIKIIQGGSDYKYEPDKRYVAQRYIYNPYLINGFKFDMRLYVLVTSFDPLRVYLFDNGLVRFCTQKYSKKDVQNRFGHLTNYSINKKN 164          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A8J2S935_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S935_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.210e-33
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 EPRAIWIVKPPASSCGRGIRVINKGGV--GGVSKSKKGLVQRYIHNPML-IDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
            +  A+WIVKPPASSCGRGIR+     +  G + K KK +VQRY+  P L ++GRKFDLRLY LVTS++PL VY+ E+GLVRFST  Y++RNLR R+ HLTNYS+NKKS
Sbjct:  263 DKHAVWIVKPPASSCGRGIRLATSRELTAGTLPKEKKYVVQRYVDAPFLGVNGRKFDLRLYALVTSVDPLVVYVHEDGLVRFSTHAYTMRNLRCRYVHLTNYSVNKKS 370          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A485LQK5_9STRA (Aste57867_24489 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQK5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.320e-32
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 EPRAIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRY--SLRNLRSRFTHLTNYSINKKS 315
            EP ++WIVKPPAS+CGRGI+VI    V  + K+KK +VQRY+ +P LI G KFDLR+YV+VTS +PLR+YLF EGL RF T +Y  S   L++R  HLTN+S+NKK+
Sbjct:  251 EPASLWIVKPPASACGRGIKVIQASQVDSLKKTKKLVVQRYLASPYLIHGFKFDLRIYVVVTSFDPLRIYLFNEGLARFCTVKYATSAAQLKNRLVHLTNFSVNKKN 357          
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Match: A0A8K1CEN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEN4_PYTOL)

HSP 1 Score: 128 bits (322), Expect = 2.360e-32
Identity = 62/106 (58.49%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   10 AIWIVKPPASSCGRGIRVINKGGVGGV----SKSKKGLVQRYIHNPMLIDGRKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYSINKKS 315
            ++WIVKPPA++CGRGIRV+    V        + +K ++QRY+ +P+L+DG KFDLRLYV+VTS++PLRVYLF+EGL R  T RYSL NL++RF+HLTNYS+NK++
Sbjct:  370 SLWIVKPPAAACGRGIRVLAAKDVESFIAKDRQQRKYVIQRYLSSPLLLDGYKFDLRLYVVVTSVDPLRVYLFQEGLTRICTSRYSLGNLKNRFSHLTNYSVNKQN 475          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1668.4788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RSL0_9STRA1.500e-3865.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6Y182_9STRA2.280e-3665.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X5F4_GLOUD7.760e-3664.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1GD72_9STRA1.070e-3457.94Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3HDX9_9STRA3.410e-3459.41Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3ZS96_9STRA7.870e-3462.04Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A6G0XNR5_9STRA1.410e-3358.10Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A8J2S935_9STRA5.210e-3362.04Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A485LQK5_9STRA2.320e-3258.88Aste57867_24489 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1CEN4_PYTOL2.360e-3258.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1668contigEcto-sp13_S_contig1668:14547..15565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.8
Seed ortholog evalue7.2e-31
Seed eggNOG ortholog65071.PYU1_T012453
Model size315
KEGG koko:K16601
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Tubulin polyglutamylase. Source PGD
EggNOG OGs1MAWT@121069,KOG2156@1,KOG2156@2759
Cds size315
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.7167346-CDS-Ecto-sp13_S_contig1668:14546..146631681462874.7167346-CDS-Ecto-sp13_S_contig1668:14546..14663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 14547..14663 +
1681462874.7286613-CDS-Ecto-sp13_S_contig1668:15367..155651681462874.7286613-CDS-Ecto-sp13_S_contig1668:15367..15565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 15368..15565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1668.4788.1prot_Ecto-sp13_S_contig1668.4788.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1668 14547..15565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1668.4788.1

>prot_Ecto-sp13_S_contig1668.4788.1 ID=prot_Ecto-sp13_S_contig1668.4788.1|Name=mRNA_Ecto-sp13_S_contig1668.4788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
EPRAIWIVKPPASSCGRGIRVINKGGVGGVSKSKKGLVQRYIHNPMLIDG
RKFDLRLYVLVTSMEPLRVYLFEEGLVRFSTKRYSLRNLRSRFTHLTNYS
INKKS
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mRNA from alignment at Ecto-sp13_S_contig1668:14547..15565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1668.4788.1 ID=mRNA_Ecto-sp13_S_contig1668.4788.1|Name=mRNA_Ecto-sp13_S_contig1668.4788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1019bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:14547..15565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCGCGGGCGATCTGGATCGTCAAACCCCCTGCCAGCAGCTGCGGGCG AGGAATCCGCGTGATCAACAAGGGCGGCGTGGGCGGCGTCAGCAAGTCCA AGAAGGGTCTCGTACAGGTGGGAGAAAAGATCGATCGATCGATCGATCGA TCGATCGGTTTCTCGTGTGGCTTCCGAGTCCCGCAAGCGGAGGGCGGCTC CGGGTTAGGTTTAGATTCCCTGACGCAAGAGACGTTTTTTTGGTTGCGAG GGCTGTTGCTTGCAAAAGAATTATTTTGTGCGTGAGATTCTGTGGTTTTG AATGGATGTTTTGGTGAAAAGACATAGATCCCGGCAGAGTAATTTTTTTA AAGGTATGCGTAGTCATGGTACGAGGACTCTGGGATGTGGTCGAGCTTCC GAAGTGATGCCAGACTTTTTTATTTCCGTTCCCTATCGCTTCGGACTGGG ATGTCTTTTTTGTCTCTGCAGCTCCTTGGAGGTGTTGTGTTTTCCGTCCT AATAGCATATTGTGGCTCAGTATCGAGCAGCTTGCCGACGTGCACCGATC TGATTGTCGCGCACCAGCACAAAAAAGCGTACGCAGTCATTGTCGTCTTC GCCTTCGCCGTCACCCCCAGCCCCTGCTCGACACTACCAAACTTACGCCC GACTAGACCCTCGAACACCCCCCGCCCCGTGTGCAACATGACCCCCCCCC CTGTTCAACGTCACGTACNNNNNNNNNNCCCCCCGCCCGGACTCGCGCCC CCGGCCCCGCCCGCGCGCCGCCCGGCCCCCCCCCCCCCCCCCCCCCCCCC TTGACCACCCGAACCAATCAGAGGTACATCCACAACCCCATGCTGATCGA CGGGCGCAAGTTCGACCTTCGGCTGTACGTGTTGGTGACGAGCATGGAGC CGTTGCGGGTATATCTCTTCGAGGAGGGGCTGGTTCGGTTCTCGACGAAG CGGTACAGCCTCAGGAACCTCCGCTCGCGCTTCACCCACCTCACCAACTA CTCCATCAACAAGAAGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1668:14547..15565+

>mRNA_Ecto-sp13_S_contig1668.4788.1 ID=mRNA_Ecto-sp13_S_contig1668.4788.1|Name=mRNA_Ecto-sp13_S_contig1668.4788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:14547..15565+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCGCGGGCGATCTGGATCGTCAAACCCCCTGCCAGCAGCTGCGGGCG
AGGAATCCGCGTGATCAACAAGGGCGGCGTGGGCGGCGTCAGCAAGTCCA
AGAAGGGTCTCGTACAGAGGTACATCCACAACCCCATGCTGATCGACGGG
CGCAAGTTCGACCTTCGGCTGTACGTGTTGGTGACGAGCATGGAGCCGTT
GCGGGTATATCTCTTCGAGGAGGGGCTGGTTCGGTTCTCGACGAAGCGGT
ACAGCCTCAGGAACCTCCGCTCGCGCTTCACCCACCTCACCAACTACTCC
ATCAACAAGAAGTCC
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