mRNA_Ecto-sp13_S_contig16660.4774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16660.4774.1
Unique NamemRNA_Ecto-sp13_S_contig16660.4774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16660.4774.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 9.230e-49
Identity = 95/128 (74.22%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:   40 ELLAEELFQAAPGGIIPPGMSATQRQPAVSMSANGGVSSPSSLRECRRGEQGGASAGAAAAAAGWVPRVPAGVEAHPGQVQLMQRCLRHERELRPGGFYPIVLFLHDLVKSLGGDERRKNALWLGSTT 423
            +LLAEEL QAAPGGI+PPGMSA QRQPAVSMSANG                           AGWVPRVPAGVEAHPGQVQLMQRCLRHERELRPGGFYPIVLFLHDLVKSLGGDERR NALWLG TT
Sbjct:  408 QLLAEELLQAAPGGILPPGMSAMQRQPAVSMSANGXXXXXXXXXXXXXXXXXXXXXXXXXXXAGWVPRVPAGVEAHPGQVQLMQRCLRHERELRPGGFYPIVLFLHDLVKSLGGDERRNNALWLGPTT 535
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16660.4774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8P8_9PHAE9.230e-4974.22Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16660contigEcto-sp13_S_contig16660:1837..3165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size553
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.8127785-CDS-Ecto-sp13_S_contig16660:1837..20871681462873.8127785-CDS-Ecto-sp13_S_contig16660:1837..2087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16660 1838..2087 -
1681462873.8232555-CDS-Ecto-sp13_S_contig16660:2619..28791681462873.8232555-CDS-Ecto-sp13_S_contig16660:2619..2879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16660 2620..2879 -
1681462873.8330772-CDS-Ecto-sp13_S_contig16660:3123..31651681462873.8330772-CDS-Ecto-sp13_S_contig16660:3123..3165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16660 3124..3165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16660.4774.1prot_Ecto-sp13_S_contig16660.4774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16660 1838..3165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16660.4774.1

>prot_Ecto-sp13_S_contig16660.4774.1 ID=prot_Ecto-sp13_S_contig16660.4774.1|Name=mRNA_Ecto-sp13_S_contig16660.4774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
YESDVFSYGGVLYELLAEELFQAAPGGIIPPGMSATQRQPAVSMSANGGV
SSPSSLRECRRGEQGGASAGAAAAAAGWVPRVPAGVEAHPGQVQLMQRCL
RHERELRPGGFYPIVLFLHDLVKSLGGDERRKNALWLGSTTNSDKPPSSS
SLAPREGAGLVSAAASVAVDPEGGDGDGDGAEAG
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mRNA from alignment at Ecto-sp13_S_contig16660:1837..3165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16660.4774.1 ID=mRNA_Ecto-sp13_S_contig16660.4774.1|Name=mRNA_Ecto-sp13_S_contig16660.4774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16660:1837..3165- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGAGTCGGACGTGTTCAGCTACGGGGGCGTGCTGTATGAGGTGGGTGT
GGCTGCGGCGCCGCGGGGGGGGGCATCGGTTCTTGCGCCTGTTTTCGTTG
AGACAACCGAGAAGCTATCTTTCGGTTGTTGTCTTTGCACAACCACGATA
ACATCCGCACAACCCACAACCACAACAGTATCAATTCCTCAACCACATGC
GACCACACGACAGCAAATCACGTACACCCACACGACCGCACCCAACAACA
ATCCCTCGTATCCCAACACCCCCCACCACTTGTCAGCTCTTAGCCGAAGA
GCTCTTCCAAGCGGCACCGGGCGGAATCATCCCCCCCGGCATGTCCGCGA
CGCAGCGGCAGCCAGCGGTCTCGATGTCGGCGAACGGGGGTGTTAGCTCT
CCCTCCTCTCTCCGGGAGTGTCGCCGGGGGGAGCAAGGAGGAGCGTCCGC
TGGTGCTGCCGCCGCCGCTGCGGGCTGGGTCCCCCGAGTCCCCGCCGGAG
TGGAGGCGCACCCCGGGCAGGTTCAGCTCATGCAGCGGTGTCTAAGGTGC
GGTTTGGTGTCTTCGTGTTCGTGTTCGTTGTTGTTAGCATGAAGTGCGCT
GATGAATACGGTCAGTCTCACTGTGGTTGTTTGTGTGTGTGTCTTTGTTT
TACACACCGACGCAGCTAACGGGCTGACCAATGAAAATACGTCAGTCTTT
GTGCGTCCGAAAAGAGAAATGCTGCTATGGCCTGATCTCATCTGGGGCAT
GGTGTGTTTGTGTGTGTGTTCACTGTTGTGAGCATCAACCGTGCTGAATA
GTAGCTGGCTGTATGCCTCTCACGCCCCCCTCCACCCCCCCACCAGCTTT
GTTACTTTCACGCACACACCCACACACCCACTCCTTGCTCCCCCCATTTC
TTTCACACACACACACACACACACACATCTCGACCTCTTACTTTCTCGTC
CCCCCCCTGGCTCCATTACCTTCTTCAACACACGCATCCCCGGGTCTATT
TTTTTCTTCCACCCCCCTCACCAACACATGAATATCCCTTGTGCATGCCT
GCATGCCTGCGTGCATGCCTGCATGAAGGCACGAGCGCGAGCTGCGCCCC
GGAGGCTTCTACCCGATCGTCCTCTTCCTCCACGACCTCGTCAAGAGCCT
GGGGGGCGACGAGCGACGCAAGAACGCCCTCTGGCTCGGATCTACGACGA
ACTCGGACAAGCCACCGTCGTCTTCGTCGCTCGCGCCCCGGGAGGGTGCA
GGGTTGGTCTCGGCGGCGGCGTCGGTTGCTGTTGACCCGGAAGGTGGTGA
TGGTGATGGTGATGGTGCAGAGGCGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16660:1837..3165-

>mRNA_Ecto-sp13_S_contig16660.4774.1 ID=mRNA_Ecto-sp13_S_contig16660.4774.1|Name=mRNA_Ecto-sp13_S_contig16660.4774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16660:1837..3165- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGAGTCGGACGTGTTCAGCTACGGGGGCGTGCTGTATGAGCTCTTAGC
CGAAGAGCTCTTCCAAGCGGCACCGGGCGGAATCATCCCCCCCGGCATGT
CCGCGACGCAGCGGCAGCCAGCGGTCTCGATGTCGGCGAACGGGGGTGTT
AGCTCTCCCTCCTCTCTCCGGGAGTGTCGCCGGGGGGAGCAAGGAGGAGC
GTCCGCTGGTGCTGCCGCCGCCGCTGCGGGCTGGGTCCCCCGAGTCCCCG
CCGGAGTGGAGGCGCACCCCGGGCAGGTTCAGCTCATGCAGCGGTGTCTA
AGGCACGAGCGCGAGCTGCGCCCCGGAGGCTTCTACCCGATCGTCCTCTT
CCTCCACGACCTCGTCAAGAGCCTGGGGGGCGACGAGCGACGCAAGAACG
CCCTCTGGCTCGGATCTACGACGAACTCGGACAAGCCACCGTCGTCTTCG
TCGCTCGCGCCCCGGGAGGGTGCAGGGTTGGTCTCGGCGGCGGCGTCGGT
TGCTGTTGACCCGGAAGGTGGTGATGGTGATGGTGATGGTGCAGAGGCGG
GG
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