mRNA_Ecto-sp13_S_contig1664.4758.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 6.420e-141 Identity = 246/269 (91.45%), Postives = 246/269 (91.45%), Query Frame = 1
Query: 1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQMV 807
RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGG AAGVSSSPGAVGASRGMLEKLQGAQSHRA LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLK QSRNA AVGGRGG QMSQTSQMSEGQQVAMALPFP A SALSLAEGFGLLRRCLTQQMV
Sbjct: 526 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGGAAGVSSSPGAVGASRGMLEKLQGAQSHRAALRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKAQSRNAAAVGGRGGLSGGSNGGTQMSQTSQMSEGQQVAMALPFPQAAGSGGGG--SALSLAEGFGLLRRCLTQQMV 792
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 2.610e-138 Identity = 249/270 (92.22%), Postives = 250/270 (92.59%), Query Frame = 1
Query: 1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXX-SALSLAEGFGLLRRCLTQQMV 807
RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGG SSSPGAVGASRGMLEKLQGAQSHRA LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNA AV GRGG QMSQTSQMSEGQQ+AM LPFPLA XXXXXXXX SALSLAEGFGLLRRCLTQQMV
Sbjct: 508 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGG----SSSPGAVGASRGMLEKLQGAQSHRAALRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAAAVAGRGGLSGGSNGGTQMSQTSQMSEGQQMAMVLPFPLAAXXXXXXXXXSALSLAEGFGLLRRCLTQQMV 773
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI001E1DAE8E (Fanconi anemia group I protein-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DAE8E) HSP 1 Score: 120 bits (300), Expect = 6.100e-27 Identity = 92/268 (34.33%), Postives = 142/268 (52.99%), Query Frame = 1
Query: 4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMS-EGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
V+ TV + GWDH+V L++LG L+D S P AV +L +Q +H+ LG +L++TFK HE+VR ++L + +V T + V +++LLG +V P LLL V+++F Y+S L PT AE L+A+ PL++L L+DS++L LRKA+FSR+ AR + G +++LK + +GG + SQ+SQ S Q+++ + P A+ L E G LRRCL+QQ
Sbjct: 367 VIQTVQNSTYGWDHVVQGLVQLGFILMD---------SFGPKAVFGRIDILPSIQTGPTHQTC----QLGAKILLKTFKAHEMVRSEILEQIFNRVITKATSPVSHFLELLGDIVFASPQLLLDSTTKVREMFDYLSFLCPTSAEGLLRAIQPLLKLSMNLKDSLILVLRKAMFSRQLDARKIGASGFLMILK----HFRVLGG-----------IRSSQSSQPSFSSSQISVDVHIP-----HNASSNEAMCL-EILGNLRRCLSQQ 600
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI00201F5705 (Fanconi anemia group I protein-like isoform X1 n=5 Tax=Haliotis TaxID=6452 RepID=UPI00201F5705) HSP 1 Score: 119 bits (297), Expect = 1.520e-26 Identity = 95/267 (35.58%), Postives = 139/267 (52.06%), Query Frame = 1
Query: 4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
VL TV GWDH++ SL++LG L+D S P AV G +E ++ LG +L+ TFK HEVVR ++L + +VT ++ V Y++LL V+ P LLL V++ F Y+S LPP+ AE L+A+ PL++L L+DS++L LRKA+FS++ +R + V G +++LK + +GG Q SQT +S+ QV + P+ A AL L E G LRRC TQQ
Sbjct: 366 VLETVSNSVYGWDHVIQSLVQLGFTLMD---------SFGPKAV---FGRIEPTSPTTQLTPARQSCRLGARLLINTFKAHEVVRHEILDQIFNRVTIKATSPVSHYLELLADTVKSAPQLLLESVPKVREAFDYLSFLPPSSAEGLLKAIQPLLKLSMSLKDSLILVLRKAMFSKQLDSRKIGVMGFLMILK----HFKVLGG--------LVASQSSQTFSLSQ-IQVDVHKPYNAASN-------EALCL-EILGNLRRCCTQQ 599
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A2B4SIP3_STYPI (Fanconi anemia group I protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SIP3_STYPI) HSP 1 Score: 117 bits (294), Expect = 3.810e-26 Identity = 92/268 (34.33%), Postives = 134/268 (50.00%), Query Frame = 1
Query: 1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
++L TV GWDH+ L++LG L+D G +SS Q T + LG VL++TFK HE+VR ++L +L +V T + V Y++LL V P++LL V++ Y+S LPP AE FL+A+ PL+++ L+DS+++ LRKA+FSR+ AR +AV G +L+LK + +GG SQ SQ S Q+ + + AL L E G LRRCLTQQ
Sbjct: 364 QILETVQNSLFGWDHVTQGLVQLGFMLMDTFGPKTFDSNSS-----------------QIPSPTQHSCRLGSSVLLDTFKAHEMVRSEILQQILNRVITKATTPVYHYIELLASTVSSAPHVLLESLPRVKEALDYLSFLPPKSAEGFLKAIQPLLKISLSLRDSLMVVLRKAMFSRQVDARKIAVTGFLLILK----HFKILGG------GITSSQSGSQPSQPSHSSQIQVDV-----HVRGGNMGNEALCL-EILGNLRRCLTQQ 598
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI0009E4B81C (Fanconi anemia group I protein-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4B81C) HSP 1 Score: 117 bits (292), Expect = 6.830e-26 Identity = 89/257 (34.63%), Postives = 127/257 (49.42%), Query Frame = 1
Query: 34 GWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
GWDH+ L++LG L+D G +SSP T A LG +L++TFK HE+VR ++L +L +V T + V Y+ LL V P++LL +++ Y+S LPP AE FL+A+ PL+++ L+DS++L LRKA+FSR+ +R +AV G +L+LK GG Q+SQT S QV + + AL L E G LRRCLTQQ
Sbjct: 398 GWDHVTQGLVQLGFTLMDAFGPKIFDSTSSPNLT-----------------PTQYAYKLGSSILLDTFKAHEMVRCEILQQILNRVITKATTPVHHYIDLLASTVSSAPHVLLESLPRIKEALDYLSFLPPKSAEGFLKAIQPLLKISLSLRDSLILVLRKAMFSRQVDSRKIAVTGFLLILKHFKI-------LGGSMPSSQSGSQLSQTLSHSSQIQVDVHV-------RGGGVGNEALCL-EILGNLRRCLTQQ 622
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A7M7NTM5_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NTM5_STRPU) HSP 1 Score: 117 bits (292), Expect = 7.030e-26 Identity = 91/271 (33.58%), Postives = 131/271 (48.34%), Query Frame = 1
Query: 1 RVLLTVVAFSR-GWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRAT--LRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
++LL V S GWDH++ L+ LG L+D G PG G + L+G +T +AS LGR +L+ FK+ + +R +L +L +V R+ G V Y+KLL +V P +L V++ F Y++ LP + AE L+A PLMRL L+DS++L LRKA+FSR+ AR +AV G + +LK MSQTSQ + + + A+ E G LRRCLTQQ
Sbjct: 364 KLLLETVENSMYGWDHVIHGLVMLGFTLMDSFG-------PKPGPFGG-----KALEGGPGTPSTPNQQASQLGRDILLNLFKSQDGIRSSILEQILNRVVTRTAGSVSQYIKLLSSMVTSAPQTVLDCMGKVREAFDYLTYLPASTAEGLLKAFQPLMRLNVTLKDSLMLVLRKAMFSRQGEARKIAVLGYLQILKH---------------FRVFGSLPMSQTSQGYSMASTSSQIQVDIHGGSNQASNYEAIVCMEILGNLRRCLTQQ 607
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: A0A8B7YVT3_ACAPL (Fanconi anemia group I protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YVT3_ACAPL) HSP 1 Score: 115 bits (288), Expect = 2.370e-25 Identity = 88/267 (32.96%), Postives = 127/267 (47.57%), Query Frame = 1
Query: 4 VLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
+L TV S GWDH+ L++LG L+D G A + S + + +H+A LG +L+ TFK HE+VR +L +L ++ +S V Y+ LL V P +LL V++ F Y++ LPP+ AE L+AV PLM L L+DS++L LRKA+FSR+ AR +AV G +L+LK + Q+S S MS Q + + + E G LRRC TQQ
Sbjct: 370 ILDTVQNSSYGWDHVTQGLVQLGFTLMDAFGPRAGPLGKST--------EHQTCTDSPNHQACS----LGCQILLSTFKAHEMVRPDILEQLLNRIVTKSSAPVSHYIGLLANTVNSAPQILLDSLPKVREAFDYLAFLPPSSAEGLLKAVQPLMILSVSLKDSLMLVLRKAMFSRQVDARKIAVSGYLLILKSFQVDK------------CLQSCQLSSQSYMSSSSQTLV----DIHTRSHPVNNYETMVCLEILGNLRRCFTQQ 608
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI0016022001 (Fanconi anemia group I protein-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016022001) HSP 1 Score: 112 bits (280), Expect = 2.720e-24 Identity = 93/265 (35.09%), Postives = 131/265 (49.43%), Query Frame = 1
Query: 13 TVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQVTARSQG-VLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQT-SQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
TV S GWDH+ L++LG L+D + G P G + + G T A LG +L+ TFK HE+VR +L +L +V ++ V Y++LL V P LL V+D F Y+S LP AE L+AV PL++L L+D+++L LRKA+FSR+ AR VAV G +++L R+ +GG SQ+ SQ Q+ + + P + AL L E G LRRCLTQQ
Sbjct: 368 TVKNSSYGWDHVTQGLVQLGFTLMD-----SFGPKLGPA------GRVVESSGGTPKSPTQLACSLGAQILVNTFKVHEMVRSDILEQILNRVVTKATSPVTHYIELLSNTVSTVPQTLLECLPKVRDSFDYLSYLPAASAEGLLKAVQPLLKLSMPLKDTLMLVLRKAMFSRQADARKVAVTGFLMIL----RHFKVLGG-----------LPCSQSCSQSFSFSQIQVDIHTPPSSAGN-----EALCL-EILGNLRRCLTQQ 600
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Match: UPI001CF1C3CC (Fanconi anemia group I protein-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1C3CC) HSP 1 Score: 112 bits (279), Expect = 3.700e-24 Identity = 93/268 (34.70%), Postives = 134/268 (50.00%), Query Frame = 1
Query: 1 RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGMLEKLQGAQSHRATLRASYLGRVVLMETFKTHEVVRDQVLSAVLEQV-TARSQGVLGYVKLLGLLVQRYPNLLLGKAAAVQDVFGYISVLPPTVAERFLQAVSPLMRLRPGLQDSVVLPLRKALFSREERARLVAVGGLVLLLKDQSRNAPAVGGRGGXXXXXXXXXQMSQTSQMSEGQQVAMALPFPLAXXXXXXXXXSALSLAEGFGLLRRCLTQQ 801
+VL TV GWDH+ L++LG L+D G + SSSP + T A LG +L++TFK HE+VR ++L +L +V T + V ++ LL V P++LL V++ Y+S L P AE FL+A+ PL+++ L+DS++L LRKA+FSR+ AR +AV G +L+LK + +GG Q+SQ S QV + + AL L E G LRRCLTQQ
Sbjct: 364 QVLETVRNSLFGWDHVTQGLVQLGFTLMDAFGPKSFETSSSP-----------------NLSPTQLAYKLGSSLLLDTFKAHELVRSEILQQILNRVITKATTPVNHFIDLLASTVHAAPHVLLESLPRVKEALDYLSFLQPKSAEGFLKAIQPLLKISLTLRDSLILVLRKAMFSRQVDARRIAVTGFLLILK----HFKILGG----VSSSQPSSQLSQPLLPSSQIQVDVHV-------RGNAVSNEALCL-EILGNLRRCLTQQ 598 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1664.4758.1 >prot_Ecto-sp13_S_contig1664.4758.1 ID=prot_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp RVLLTVVAFSRGWDHLVDSLLRLGLRLLDRGGGAAAGVSSSPGAVGASRGback to top mRNA from alignment at Ecto-sp13_S_contig1664:581..2603- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1664.4758.1 ID=mRNA_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:581..2603- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:581..2603- >mRNA_Ecto-sp13_S_contig1664.4758.1 ID=mRNA_Ecto-sp13_S_contig1664.4758.1|Name=mRNA_Ecto-sp13_S_contig1664.4758.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:581..2603- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |