mRNA_Ecto-sp13_S_contig16577.4725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16577.4725.1
Unique NamemRNA_Ecto-sp13_S_contig16577.4725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.780e-14
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    4 HWSQKCMSWYKPPVDHIVELARDLLEAKRLADDALIP 114
            HWSQ+CMSWY+PPVD I+ELARDLLEAKRLADDALIP
Sbjct:  637 HWSQECMSWYEPPVDEIIELARDLLEAKRLADDALIP 673
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.220e-11
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 GHWSQKCMSWYKPPVDHIVELARDLLEAKRLADDALIPPEGAEAHQGYP 147
            G WSQ+C +WY+P +D I++L RDLLEAKR ADDAL  PE  + HQ  P
Sbjct:  621 GEWSQECHTWYEPDIDEIIDLVRDLLEAKRQADDALELPEATDLHQEQP 669
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: A0A6H5L2R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 GHWSQKCMSWYKPPVDHIVELARDLLEAKRLADDALIPPEGAEAHQGYP 147
            G WSQ+C +WY+P +D +V+L RDLLEAK  A+DAL  PE  + HQ  P
Sbjct:  227 GEWSQECHTWYEPDIDEVVDLVRDLLEAKGQANDALELPEATDIHQEQP 275
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: A0A6H5JTU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.140e-7
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 GHWSQKCMSWYKPPVDHIVELARDLLEAKRLADDALIP 114
            G WSQKC +W+ P VD +VELARDLLEAK  A++AL P
Sbjct:  629 GEWSQKCHTWFHPDVDEVVELARDLLEAKGQAENALEP 666
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.150e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 GHWSQKCMSWYKPPVDHIVELARDLLEAKRLADDAL 108
            G W ++C +WYKP VD IV LARDLLE KR ADDA+
Sbjct:  628 GKWKKRCQTWYKPDVDEIVTLARDLLEGKRQADDAV 663
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BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Match: D7FWK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK4_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.490e-6
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    7 WSQKCMSWYKPPVDHIVELARDLLEAKRLADDALIPPEGAEAHQGYP 147
            W+  C +WY P VD I++LARDLLEAKR ADDA   P  A+A +  P
Sbjct:  399 WTISCNTWYNPGVDGIIDLARDLLEAKRQADDARKFPGAADADEEQP 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16577.4725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L311_9PHAE7.780e-1489.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWK6_ECTSI5.220e-1159.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2R1_9PHAE1.210e-955.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTU1_9PHAE4.140e-765.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT9_9PHAE4.150e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWK4_ECTSI2.490e-655.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16577contigEcto-sp13_S_contig16577:747..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size397
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.6024623-UTR-Ecto-sp13_S_contig16577:746..7671681462870.6024623-UTR-Ecto-sp13_S_contig16577:746..767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16577 747..767 +
1681462870.6407368-UTR-Ecto-sp13_S_contig16577:1501..17481681462870.6407368-UTR-Ecto-sp13_S_contig16577:1501..1748Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16577 1502..1748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462870.6145658-CDS-Ecto-sp13_S_contig16577:767..8141681462870.6145658-CDS-Ecto-sp13_S_contig16577:767..814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16577 768..814 +
1681462870.6291401-CDS-Ecto-sp13_S_contig16577:1419..15011681462870.6291401-CDS-Ecto-sp13_S_contig16577:1419..1501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16577 1420..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16577.4725.1prot_Ecto-sp13_S_contig16577.4725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16577 768..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16577.4725.1

>prot_Ecto-sp13_S_contig16577.4725.1 ID=prot_Ecto-sp13_S_contig16577.4725.1|Name=mRNA_Ecto-sp13_S_contig16577.4725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MSWYKPPVDHIVELARDLLEAKRLADDALIPPEGAEAHQGYP*
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mRNA from alignment at Ecto-sp13_S_contig16577:747..1748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16577.4725.1 ID=mRNA_Ecto-sp13_S_contig16577.4725.1|Name=mRNA_Ecto-sp13_S_contig16577.4725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16577:747..1748+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCACTGGTCGCAAAAATGCATGTCATGGTACAAGCCACCCGTCGATCA
CATCGTCGAACTCGCAAGGTGAGCGATCCCTTACCTGATGTTCCGTTGTT
TTCTGGTGGTGTTGGTGTTGATGTTGGTGATGTTTCGCGGCAGCGTATGT
GTTAAACGCGAATCCGGGCCTCTTTAGCGGGTCACAATACTCTCGCTGAC
AAAGTGGCTGAGTTGTCTTCGTTGTTCACAAGCGTTTTTCGTGAATGTTG
TCGCAAGAGAACATGAATAGTCCACATGTGACAATAGGTGTTTATCGTAT
ATTCCGACCGTCTAGGGATGGCTAAGTTGGGGTTTGCAGTCGTGCCCAAT
GAGTCGGAATCATTTGTAGACAAGGTGCTCCACGTCGGTATCTTCAAGGT
GTATCGAACACGTGGGAGCCAGCTAGCGAGTGAGAGTTGATACGGGTCGA
ATATCGATGAACGTGCTACTCTCGACAAGGTGAGACAATCAACGGTTCAT
TGTCACGTGCTTGGGTATCGTTCAAATCTTGTTTCGGCGGAACCCGTCGC
TGAGTGTATTCCGGTCTACCCACACTTACTTGCCATTCACCCCCCACCCA
CCCCGGCCAAACGTTATTAATCTATTGGGTTTTTCGAAACCGTTGCCGTC
TTGGTGCATCCTTATATTTGCAGGGATCTTCTCGAAGCGAAACGCCTGGC
AGACGATGCCCTGATACCCCCTGAAGGAGCAGAAGCCCATCAAGGATACC
CGTAACTCTACGACCCACCACGGCCCGGCTTCATTGTCTCCGTAGGAACC
CTGGCAAAAGAAGCCCTGGGGTAATTGCAAGGGAAGGATTCTGGTAGACT
TCCTGTCGTAGACTGTCACTCTCTACAAGCCGGGACGGGACGCCTCAGAT
GTTGGCAGTGGCACTGGGGGCTCACTTCAGCCGATCAGGCGGCTCCTGTT
TTGCTAGAGTACGAGATCTCTCCGTATTCCCTTGGAGATACTCCATCGCG
AT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16577:747..1748+

>mRNA_Ecto-sp13_S_contig16577.4725.1 ID=mRNA_Ecto-sp13_S_contig16577.4725.1|Name=mRNA_Ecto-sp13_S_contig16577.4725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16577:747..1748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATGGTACAAGCCACCCGTCGATCACATCGTCGAACTCGCAAGGGA
TCTTCTCGAAGCGAAACGCCTGGCAGACGATGCCCTGATACCCCCTGAAG
GAGCAGAAGCCCATCAAGGATACCCGTAA
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