mRNA_Ecto-sp13_S_contig1656.4713.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1656.4713.1
Unique NamemRNA_Ecto-sp13_S_contig1656.4713.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1656.4713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1656contigEcto-sp13_S_contig1656:10222..10708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size478
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.6326034-UTR-Ecto-sp13_S_contig1656:10221..102721681462869.6326034-UTR-Ecto-sp13_S_contig1656:10221..10272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1656 10222..10272 +
1681462869.669138-UTR-Ecto-sp13_S_contig1656:10695..107081681462869.669138-UTR-Ecto-sp13_S_contig1656:10695..10708Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1656 10696..10708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.64393-CDS-Ecto-sp13_S_contig1656:10272..104171681462869.64393-CDS-Ecto-sp13_S_contig1656:10272..10417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1656 10273..10417 +
1681462869.6591132-CDS-Ecto-sp13_S_contig1656:10426..106951681462869.6591132-CDS-Ecto-sp13_S_contig1656:10426..10695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1656 10427..10695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1656.4713.1prot_Ecto-sp13_S_contig1656.4713.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1656 10273..10695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1656.4713.1

>prot_Ecto-sp13_S_contig1656.4713.1 ID=prot_Ecto-sp13_S_contig1656.4713.1|Name=mRNA_Ecto-sp13_S_contig1656.4713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MRGKTRHPGPSPKRPRKTPPPPRIVPTHQHTKIDTVREGAAHGSGNNTTS
QPASQPPFVAHNYLQARLCGASQSTQACFSLSMGSVSLSNHLPRRLRLVG
ASGPCKSWDPDNKTDREGRGPTRNKTQRADNTRACRM*
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mRNA from alignment at Ecto-sp13_S_contig1656:10222..10708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1656.4713.1 ID=mRNA_Ecto-sp13_S_contig1656.4713.1|Name=mRNA_Ecto-sp13_S_contig1656.4713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1656:10222..10708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTGTTTTCCGTGGTCAATCTTTTGTCTGTGTAGACCCCGGTGGGGTC
AATGAGAGGCAAGACAAGACACCCGGGACCTTCGCCCAAGCGCCCGCGAA
AGACACCGCCGCCGCCCCGTATCGTGCCAACACACCAACACACAAAAATC
GACACCGTGCGCGAGGGCGCCGCTCACGGTAGCGGCAACAACACCAGCCA
GCCAGCCAGCCAGCCAGCCAGCCAGCCGCCGTTCGTTGCACACAATTATT
TGCAAGCGCGCCTCTGTGGAGCCAGCCAGTCTACGCAGGCCTGCTTTTCC
CTGTCCATGGGCTCTGTCTCTCTCTCCAACCACCTGCCACGCCGCCTACG
TCTGGTTGGAGCCTCGGGCCCATGCAAGAGTTGGGATCCAGATAACAAGA
CCGACAGAGAGGGGAGAGGACCCACCCGTAACAAGACACAAAGAGCAGAC
AACACCCGCGCATGTCGAATGTGAAGCGCTCGACACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1656:10222..10708+

>mRNA_Ecto-sp13_S_contig1656.4713.1 ID=mRNA_Ecto-sp13_S_contig1656.4713.1|Name=mRNA_Ecto-sp13_S_contig1656.4713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1656:10222..10708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGGCAAGACAAGACACCCGGGACCTTCGCCCAAGCGCCCGCGAAA
GACACCGCCGCCGCCCCGTATCGTGCCAACACACCAACACACAAAAATCG
ACACCGTGCGCGAGGGCGCCGCTCACGGTAGCGGCAACAACACCACCAGC
CAGCCAGCCAGCCAGCCGCCGTTCGTTGCACACAATTATTTGCAAGCGCG
CCTCTGTGGAGCCAGCCAGTCTACGCAGGCCTGCTTTTCCCTGTCCATGG
GCTCTGTCTCTCTCTCCAACCACCTGCCACGCCGCCTACGTCTGGTTGGA
GCCTCGGGCCCATGCAAGAGTTGGGATCCAGATAACAAGACCGACAGAGA
GGGGAGAGGACCCACCCGTAACAAGACACAAAGAGCAGACAACACCCGCG
CATGTCGAATGTGA
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