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Homology
BLAST of mRNA_Ecto-sp13_S_contig1656.4712.1 vs. uniprot
Match: A0A6H5L4U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U3_9PHAE) HSP 1 Score: 383 bits (983), Expect = 2.420e-128 Identity = 255/289 (88.24%), Postives = 258/289 (89.27%), Query Frame = 1
Query: 22 MRVAMSSSDSHGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQGYGRASDLLRAGHRSDGVAXXXXXXXXXXXXXXXXSGKSKDARPGGISTAGPVVVEPSPTASPSPNQ--SSPSPRGEKGKYMVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWAQVG 882
MRVAMSSSDSHGE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGQGYGRASDLL AGHR+ KSKDARPGGISTAGPVVVEPSPTASPSPNQ SSPSPRGEKGKYMVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDA+QSTLEAEPTHPARRSYWVLRLVRTTILYGG+LTPKLYAPKEVW QVG
Sbjct: 1 MRVAMSSSDSHGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS--AGQGYGRASDLLEAGHRT---------------APPPSCEKSKDARPGGISTAGPVVVEPSPTASPSPNQRCSSPSPRGEKGKYMVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDAHQSTLEAEPTHPARRSYWVLRLVRTTILYGGYLTPKLYAPKEVWTQVG 272
BLAST of mRNA_Ecto-sp13_S_contig1656.4712.1 vs. uniprot
Match: D7G2C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C1_ECTSI) HSP 1 Score: 291 bits (745), Expect = 1.660e-94 Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 1
Query: 436 MVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWAQVG 882
MVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVW QVG
Sbjct: 1 MVMGVLSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAESTGIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDANQSTLEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWTQVG 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 882 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 882 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462869.7030814-CDS-Ecto-sp13_S_contig1656:332..491 | 1681462869.7030814-CDS-Ecto-sp13_S_contig1656:332..491 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1656 333..491 - |
| 1681462869.7143562-CDS-Ecto-sp13_S_contig1656:957..1030 | 1681462869.7143562-CDS-Ecto-sp13_S_contig1656:957..1030 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1656 958..1030 - |
| 1681462869.7227674-CDS-Ecto-sp13_S_contig1656:2030..2140 | 1681462869.7227674-CDS-Ecto-sp13_S_contig1656:2030..2140 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1656 2031..2140 - |
| 1681462869.7308702-CDS-Ecto-sp13_S_contig1656:3911..4050 | 1681462869.7308702-CDS-Ecto-sp13_S_contig1656:3911..4050 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1656 3912..4050 - |
| 1681462869.7389417-CDS-Ecto-sp13_S_contig1656:6410..6811 | 1681462869.7389417-CDS-Ecto-sp13_S_contig1656:6410..6811 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1656 6411..6811 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1656.4712.1 >prot_Ecto-sp13_S_contig1656.4712.1 ID=prot_Ecto-sp13_S_contig1656.4712.1|Name=mRNA_Ecto-sp13_S_contig1656.4712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MTTNSRRMRVAMSSSDSHGEPPPSPPPLLQYGGSVGGGGGGGGGAVAAPA ASATAAGGRRRSSAGQGYGRASDLLRAGHRSDGVAAAPPPPAAVAAPPPP SSGKSKDARPGGISTAGPVVVEPSPTASPSPNQSSPSPRGEKGKYMVMGV LSSALDLAKAAVAHDEQGALPEKVLPYYKKAIRAIDTALKLLPEHVAEST GIKRHRDNYQARVDKLTQGLTRDNQHKDRRVRQQSRVRFSQMDLDANQST LEAEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWAQVG back to topmRNA from alignment at Ecto-sp13_S_contig1656:333..6811- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1656.4712.1 ID=mRNA_Ecto-sp13_S_contig1656.4712.1|Name=mRNA_Ecto-sp13_S_contig1656.4712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1656:333..6811- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACCACGAACAGCAGACGGATGAGGGTGGCTATGTCCAGTAGCGACAG
CCACGGGGAGCCTCCCCCATCGCCTCCGCCGCTGCTGCAGTATGGTGGCA
GTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGTGGCCGCGCCGGCG
GCGTCGGCGACGGCGGCTGGAGGGAGGAGGAGAAGTAGTGCTGGTCAGGG
GTATGGGCGCGCGAGTGATTTACTACGAGCAGGGCACCGGAGCGACGGTG
TGGCAGCTGCGCCTCCACCGCCGGCAGCGGTGGCGGCGCCACCGCCACCT
TCTTCTGGGAAGAGCAAGGATGCGCGGCCCGGCGGGATATCGACGGCCGG
ACCAGTCGTGGTGGAGCCGAGTCCGACGGCATCTCCATCTCCCAACCAGA
GGTACCTTGATTGCAGTCTACAACCAAGTGAAAAAGGTCGTGCTTGAGAG
TTTTTTTCATTATGGGAGCTAGCAGTTGCCCAGTGCCTTCTCGCGCACAA
AATCTACCCTCCCGCAAGGAGGTTGCTTCTCATTGTTTTTCTCCACAGGA
AATGTTCTCGTTGCGCAGCTCCTGCAACAATCAGCAAGCGGCGGACATGA
ATCACTCTGCTGCCAGCTAGATGTACTCCATGCGACAGAAAACGCACGCG
CTCAGTGGGCTAGTTTTGCCTCACAGCCGTCGGGCTGCTCGAGCAATCTC
GTGTTTTATTCCTTTGTGGGTAACTTGGTTTTCGGCACGTGTAGCAAGCC
GCGCGACGACGGACTCTCAAACTTTCCTAAACGAACGGAAGTTGCTATAT
ATATGCAATCTTCTTGTGGTCTACACCCGCCGCATGTAAATTACCGCGCT
TGTCAGCCGCATCAACAACAACAACAAAAGCAGTGCCGGTTTGCCGCTGC
TTGCATGCATGCATCTCATCCCCTCACCGCCCGCGCTGGCATGCATTCCT
TGGTAGACTAGAGAGAGGGAACGCATTACAAAAAAATCCGAAACTCGCAC
GCGCACACGGCAGGAACAACAGCAGCAGCAAACACCCACTTTGTCTGCAA
GCGGGCTTACACGGAGAAAAGTGTTGTCTTTACCCCCTCATTGTTTTTGA
TGATAGCGAAAAACAATTCGAGACGACCAACAACGGTGCAGGTAGAAAAA
ACTCATCCGATAATAAATACGTTGTTTGGAGCAACCATTATTTATCCTTC
GCGCCCTCAACCCGCAAAGTGTGTTGGGGGGGAGATATTCAAGGACTGCT
GCTGCTGCTGCTGCCTCTCTGAGCTCTACAGCATGAAGATAGAATACGAT
GTGCAGGCAGAGCGGGCGGCATGCGGCGTGCGGATTGGCGTGTGCGAGAG
CGGAGTTTTTGTGTGTGCCTGCATAAGCGAGCTTTTCCGCCCTGCTGTGG
GCGACCAAGGTTCTTTGGATGCACAGCGGTAGTATTTTGTTGCACATGAG
GTGTGTGGTTGATGACCACACTTTTGCTTCTTCCGCCTTCGATATTGTTG
TGCATGACGCTCAAAATGAAAATTGTTTTTTTTCCTGCTGGGCGGCGCTG
CGCTGCTGCTACGGTTGAGTGCGCGTTGGACGGGAAGGAAGGCGAAAGGA
CCGTTACGACGGACTCTTTGGATACAACCAACACCCGCCAGAAATTAAAC
ATGCACAATCGAAATTGATTGCGTGAACAGATTTTCTAGATGCAATGCAC
ACCACCTTGCTGCATTATGCCCCCTCTCCGTAGATAGTAGCAGGTACCCA
AAACACTGCTGCTGTAAAGCACCCTGCTGCCGCATGTCAAACAATCTTTG
CGAACGAATAGTTTTGTGTTGCACCGCTTAGACGACAGGCCTTCACTTCA
AAAGCCGGTCTATCGATTGGGGATTTGGGGGGAACAGCAGGCGTTTGTAG
CAAGGAACTTGGAAAGCGGTCCCTCTGTGGTGCGACAGCTTTTTTTTTTT
TTTCTCGGCTGATGGTTGCAGCAGGCCTACTTATGACGGAGTGCACTGCT
TTTTTTTGTCACCCAGAAAAGACCCCGGGGATTGATTGCCCTACTCCAAG
CAGCAGCGTGCACTCTTTTGCCTTTGTCGTCTCCCGCGCTTCCGATATCT
ATATCCGAAAGCTCATGGTTGAATATTTGCACACAAATTACATCTGGGAC
CACTACAGCAGTAGCATACCATGCATCATGTGTGCGCAGCAGTTGCAATT
GAAATGCAGTGGGGTCTCCTCAGCAGTACCGGTATGGACCAGAGACTAGG
CTGCAAGACGCTATTCGGACGGACCGGCACCACCCAAGAAAGCTCTCAAA
ACTTGGTGATTCATTCCGTCTGTGCCCGCTAAAACACCAGCACTATACCC
GTCCGTCGGCACCGTTTAACCAGCACTAACGAGCGACGTCCTGTGTCTGT
GTGTACTACTGCTGCACGAAGGGGAGGGAGGGCCTGGATCTGTGTGTCGC
TTCTTACACCTCAAACCTCATGATGCGCATGTACGCATTCGACCAAGCAC
GTTCGTTGTCTTCCTGCCACCCGCACTCAAACATGTATATTAATAAGGTA
TCCTGAATATGCGTAGCGCAATTGCGAAGGACTAGCGGCAGCTCTTCACG
CAGCGCGCAGGGAAGCAGGGCAGCAGCGCAGCGCCCACCCGCTCATGCAT
GACCAAAAACCCTCGCTGTGCCGCCGTCCCCCCCGCGGGTGGGACCTTCC
GGGTTTTTTCCTCATGTGCACATATCTTGGTAATTTTTTTTGCCGCAACG
GTCAGATGTAGCTCGCCCAGTCCTCGCGGGGAGAAGGGGAAGTACATGGT
CATGGGGGTGCTCTCGAGCGCGCTTGACCTAGCCAAGGCGGCCGTGGCGC
ACGACGAGCAGGGGGCTCTGCCGGAGAAGGTCCTTCCCTACTACAAGAAG
GTGCGTCTGTCTCTCTGGTACTCTCGTTTATGGTTCTTGCTGTGTGTTCG
TTAGCGCTCTGACCAATGAAAAGACGCGTGTACAGCAGTCTCGACGAGGC
TGTGTGTGTTTTTGTTGTGCAGCCTGCCTGAACCTAGGAAGCCACTGGGC
ATGCATAATAGGTGTGTGTTGGTGGGCTTGCGGGACTGGGGGGGGAACAG
GAGCTTCGCAGGGCCCACATGATGAGGGAGGGACAGTACAGACCAGCTAG
GGCCTACAAGCCCGTTGACTGAGAATTTCACTGATAATAAGAATTACTGG
CAATAGAGAAGTTGAGGCAGCTAGGAAACTCACACTTTCAAGGTCTACAA
GGCTTTCTGCCCCACCGGCGGCAGCGTGACCACCCATCAAACCCTTCTTT
GACTCTGTCTTTGGCCACCACCCTGTCGCGGGCTGCCCGATGGCCCAGAG
GTGGATAGCTGTTGCGTCTACACAGGTATGTATGCATTAGCCTTGTCAAT
TTTCTGCACCTCTATCTTTTTTTTAGTCAGTATGACCCAACGAATCCATT
TCTATCGAAGAAAACAGTTGTGGGGAGGAAAAAACAAAATTGACCTCGGA
ACGGAAGCTAGGTCGAGAGGGGTTGAGGTTTTGGTACACAGTGGGAGGGC
CGGTTTAGCAACCCCTAATGTCACTAAATGTGGTCGCTTTTCAGGGCAGA
ACCGAACTGGCATTCACATAGAAGTGTAGCAGCTGTACCACCGGGGTGCG
ACGGTGCGAATTGATTTTGTGGTCGCAAAACCGGGCCCCCTGCCACTGCT
GCAGTTGAGAATTTGAGGCTCGAAATTTTCAACAATTTTTTTACTTGACC
GTAAGACCAGGAGGTGTTCAGTCCAAAAGCCTACACTACTCTGTTCACCT
AAATCGTCGCCGTGGCGGTACAGCATTACCCCATAGACAAAACAAGAAAT
GATCCTCAACCAAAAGAAGAGGTCTGTATGTTCGCGCCCTAACTGTAGTA
TACTTTTCATAGTACCACGCGTCTTGTGGAAAACAGGAGAGTACTCGCTA
CACACGCGTACGTCGATTGTGTGCCGTTTGTGTTTTTTTCGCTAACCAGC
GGTTTTGTACCTGTGTCTCGTTGCCATCCGTTGCGGGCATAATTGCCGCT
CTTCCGAGGTACGGCTCTTTTGGCTCTTTAAGCTGTTCCTGTTGCGCCGC
GACTTGAAAATATGGATGAGGCCCTCGCTCGCTGTCTTGGCATCATTCTT
ACTCCTCAGTGACGCGGCTCTTTCTTTGTTCCTCTCGACACCAGGTCCGC
GCTGTATGCACGTTGATGCAACAACAACTTTTTGATGCTGCTCCCATCTA
GGGAATCACGTCGCGTGGTGCGCATGCTTCTTTAACTGCCAAGCACCGCA
TGGTGCACTGTTCCACCAGGCACTGCTGTTGTTTCGTCCTATGTGTACCA
GGAAGTACTATATATCCTTGGGGAGAGGGACGTCATCGCTACTCTGGTCT
GCCTGATGGCCGGCACGACCTTGCGAGAAAGAGGCAACCCAACCCCTCCT
TGATCGGGACGGGTTCTTGTCTCTTGACAGCTCTGATAAACACTCCGCGC
TGACCCCGCCCCCGTTCCCTGCCGCCGCATCTGCGTCTCTGCCTCATTCG
CACTTCGACGCTTGGTTGTATCTATGAAATACGGCGCGGAACTTGCTGTC
TCTGCGCTTGGATGCTTGGTTGTACGAAATTACGGCGCGGAACATCGACT
CACGCCACCGAATGATCGAAGGCGATACGAGCGATCGACACGGCTCTCAA
ACTGCTGCCGGAGCACGTCGCCGAGTCTACCGGTATCAAGCGGCATAGGG
ACAACTACCAAGCGAGAGTCGACAAGCTGACGTGAGGATTGGAACGAAAG
GAAATAAATGCGTTCGATGCGGTAGTAGTCGATGCAAGCTTTTCAAAGTG
CTAAAACATTCTGGATAAAGTACAGAATCGGCTGAGTAAGGGCCAGGGTC
CGTATACGATGCGATTCGCATTCGGATTTCGTGGTTCTCTGGGGGCATGG
GGGCACGGTAACTACCGTGTACGGTTCACGGTATCATGGTTGCTGCTACG
AGTAAATGGTTGCTGCCACGGGTGGTGTGCTTGATCATATCGGAAAAGCT
CGATCCGAACAGGGGTCCGAATGCGCGCTCGCTGTTTAGGTGTGTGGCAC
CACTACAAGCGCTTCCGGTCGTCGGTGTTTCCTCGACATGCGTGTAGTGG
TCTCCAGAAAACAGACACAGAAGAACCTGAAGAACCTGAACATTACGAGA
GTTGTGGAAGTACACATCTGATGACCAACAGATAGAACTGAGACCGACCG
GTTTTCGGAGCATCGAGCGCTTGGAGTGCTCATATGGCAGCATCGTCTCT
GTGTTGGTTGGGTTGTGATTGTTTCTTCACAGAACATGGAGTACACGCTT
GGAATGTGCATTTTTCGTAGTTTCTCTCGTTTGAGTTGTACCGGCAGTTT
CTTGTGCGGGGCAGAGATCGGGTCGTACGGATTCTCTCTCCAAGGATGGG
TGTGGTCGAAAGGAGAGTACGCGCGATCTATAAAAAGCCTTACGTAGATT
GAGCACCTCTGTGTTTTGTTTTTGTCGCTACTCTCAAGAGCAAGCGCTGT
TCCGGGTCAGCTTCTTGAGCGCTGCAACGTTTCTCTCCGGTGACCCTAAC
AGACGTGCGTGTGTGTCGTTGCCATTCTTTGCGTGGATGGGTGAAGAGAG
TTGATTGGGATCAAGAGCGGAGGAGGGGACACCGCCGAGTTCTTGCATCA
AGAATTCTGCCGGCTACTTGTCTGATACCTCCCCATATTCCCCTCTGTGT
ACGCCCCCCCCCCCTCGGCGTGCCCCCGCAGGCAAGGGCTGACACGGGAC
AACCAGCACAAGGACCGAAGAGTACGGCAGCAGTCGAGAGTGCGTTTCTC
ACAGGTGACACGAAAAACTCGCAGAAAATCGTTGTCCAGGCAGGGAGCGA
AGGGCAGCGGGGGTGCAGGTAGACGCCACTATTTCGTACGCGACCGACAT
TTTCACCCCTTGTCTGTGCCCCCTCCTTCCCCTCAGTTGCGCTCGGGTGC
CAAATAGGAGCCTCCGCAATTTGTGCGTTGCCCTGCGGCAGGTAGATACC
CCGCCTGTCCTTCACACCCATGCCATCACTTCGAGAATACGGGAAGTGAT
CGATAGGGTAGAGACGACTAGGGAAAACATTTTTGAGCCACCTTTGGCAA
AGTAGGAAGGAACGATTGGCCATCGGTAGGAAAGACTGTTCGGTCCTTTC
TATATATAATAGGACGCGTGGTCAATGGTCTGTCCAAGAAGGCATTGCAA
AATATATGTGCGCCCCCCTTTCCCCCACCGCCCGCACAAACCCTCCAATA
AATATTGTTCTGTTTTTCAGATGGATTTGGATGCGAACCAATCGACCTTG
GAAGCCGAACCGACACACCCAGCGAGGAGATCCTATTGGGTCTTGAGGCT
CGTGCGAACCACCATTTTGTACGGGGGTCACCTGACGCCCAAGCTCTACG
CGCCCAAGGAAGTGTGGGCGCAGGTGGGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1656:333..6811- >mRNA_Ecto-sp13_S_contig1656.4712.1 ID=mRNA_Ecto-sp13_S_contig1656.4712.1|Name=mRNA_Ecto-sp13_S_contig1656.4712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1656:333..6811- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACCACGAACAGCAGACGGATGAGGGTGGCTATGTCCAGTAGCGACAG CCACGGGGAGCCTCCCCCATCGCCTCCGCCGCTGCTGCAGTATGGTGGCA GTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGTGGCCGCGCCGGCG GCGTCGGCGACGGCGGCTGGAGGGAGGAGGAGAAGTAGTGCTGGTCAGGG GTATGGGCGCGCGAGTGATTTACTACGAGCAGGGCACCGGAGCGACGGTG TGGCAGCTGCGCCTCCACCGCCGGCAGCGGTGGCGGCGCCACCGCCACCT TCTTCTGGGAAGAGCAAGGATGCGCGGCCCGGCGGGATATCGACGGCCGG ACCAGTCGTGGTGGAGCCGAGTCCGACGGCATCTCCATCTCCCAACCAGA GCTCGCCCAGTCCTCGCGGGGAGAAGGGGAAGTACATGGTCATGGGGGTG CTCTCGAGCGCGCTTGACCTAGCCAAGGCGGCCGTGGCGCACGACGAGCA GGGGGCTCTGCCGGAGAAGGTCCTTCCCTACTACAAGAAGGCGATACGAG CGATCGACACGGCTCTCAAACTGCTGCCGGAGCACGTCGCCGAGTCTACC GGTATCAAGCGGCATAGGGACAACTACCAAGCGAGAGTCGACAAGCTGAC GCAAGGGCTGACACGGGACAACCAGCACAAGGACCGAAGAGTACGGCAGC AGTCGAGAGTGCGTTTCTCACAGATGGATTTGGATGCGAACCAATCGACC TTGGAAGCCGAACCGACACACCCAGCGAGGAGATCCTATTGGGTCTTGAG GCTCGTGCGAACCACCATTTTGTACGGGGGTCACCTGACGCCCAAGCTCT ACGCGCCCAAGGAAGTGTGGGCGCAGGTGGGA back to top
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