mRNA_Ecto-sp13_S_contig16532.4702.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16532.4702.1
Unique NamemRNA_Ecto-sp13_S_contig16532.4702.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: D7G7H5_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H5_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 8.810e-125
Identity = 200/235 (85.11%), Postives = 210/235 (89.36%), Query Frame = 1
Query:  337 MIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQKEEKSQGLPRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK 1041
            MI+ELHASLLKLHDNLRRSEEMAA RLKAVEDEKAALEVA REERAKTAMQEKTM FLRQTNI+AQSV IELRNQ+ETLQKE+KSQGL    EQ+IR GLA LVE DL+KQVATL Q   EQ DEIRSL+ QLQGLEVN VPL GGLITVLSSQGASATFTSLGNAHPDCSRL ADFYPGW  PGGVAIVRMFRITVP  VRQKHLNY RRLGNVVQRFHG+SCRS+CNF+LDPK
Sbjct:    1 MIQELHASLLKLHDNLRRSEEMAAARLKAVEDEKAALEVALREERAKTAMQEKTMHFLRQTNIQAQSVEIELRNQMETLQKEKKSQGLSHTKEQKIRSGLARLVENDLQKQVATLAQLRREQVDEIRSLSIQLQGLEVNRVPLIGGLITVLSSQGASATFTSLGNAHPDCSRLRADFYPGWEAPGGVAIVRMFRITVPAGVRQKHLNYARRLGNVVQRFHGTSCRSACNFILDPK 235          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: A0A6H5JJM5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM5_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 2.480e-113
Identity = 207/293 (70.65%), Postives = 225/293 (76.79%), Query Frame = 1
Query:    1 MKAWQRINHWRRRSSKWSKSKNPPPEGSAQAEEETSRPAQAGAAHVILLVGELEDILLRVEQVQPNGNGEEEETKVDRSRQTYGPKESTGEDPVVERLMRKQEELVRTGNNE-MIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQKEEKSQGLPRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPG 876
            MKAWQR+ HWR  SSKWS +K PP EGSAQAEE     A+A AAH+IL  GEL  IL RV QVQP+GNGEEE+TKVD SRQ+YGPKES GEDPV ERL+RK E LVRTGN E MIE LH SLLKLHD  RRSEEMAA RLKAVEDEKAA EVA REE+AKT MQEKTM FLR+TNI+AQSV  E+  ++                      GLALLVEK+LRKQVATLTQS S+QA EIRSL+TQLQGLEVN VPL GGLITVLSSQGASATF  LG AHPDC+RL ADFYPG
Sbjct:    1 MKAWQRMTHWRWCSSKWSTAKTPPQEGSAQAEEXXXXXAKAAAAHMILFAGELGGILPRVGQVQPDGNGEEEKTKVDPSRQSYGPKESPGEDPVDERLLRKHEGLVRTGNEEEMIEGLHVSLLKLHDIPRRSEEMAAARLKAVEDEKAAFEVAKREEKAKTTMQEKTMHFLRRTNIQAQSV--EMSCEIRWS-------------------GLALLVEKNLRKQVATLTQSLSQQAGEIRSLSTQLQGLEVNKVPLIGGLITVLSSQGASATFIPLGIAHPDCTRLRADFYPG 272          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: D7G7H4_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H4_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 4.650e-84
Identity = 188/356 (52.81%), Postives = 230/356 (64.61%), Query Frame = 1
Query:    1 MKAWQRINHWRRRSSKWSKSKNPPPEGSAQAEEETSRPAQAGAAHVILLVGELEDILLRVEQVQPNGNGEEEETKVDRSRQTYGPKEST------GEDPVVERLMRKQEELVRTGNNEMIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQKEEKSQGL---PRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK 1041
            MKA  R+  WR RSS  SKS   P E           P QA  A   L V  L+     V Q++PNG+ E EETKVD    +YGP +        GED   ERL+ KQEELVR  + E I+EL ASLL+LH++ RRSEE+AA RLKAVE EKAALEVA + ERAKTAMQ+KTM FLRQ +IEAQSV  +LRN+++TL K EKSQG        E+++RRGLA LVEKDLRK+VA L QS  +Q  EIRSL T LQ L+ NG      ++TV ++QGA  T ++L + +PDC+RL  DF   W +  G+AI R+ RITVP  +R KH  Y R    VV RFHG+SC S+CN VLDPK
Sbjct:    1 MKALHRVTRWRWRSSTSSKSNTSPEE-----------PEQAKDA---LAVRSLDGNRPPVGQLEPNGHQEGEETKVDAPGHSYGPNQLIAEDQRHGEDNADERLLSKQEELVRNSDKEEIQELCASLLQLHNDRRRSEEIAAARLKAVEGEKAALEVAIQAERAKTAMQQKTMHFLRQISIEAQSVETQLRNELQTL-KNEKSQGTNGHSDTKEEKMRRGLARLVEKDLRKRVAVLEQSQRQQVGEIRSLLTPLQVLQRNGGSHFDRILTVGNNQGA--TLSALYDGNPDCTRLRDDFLSAWRL-NGLAIERILRITVPADIRAKHDKYARSHRTVVGRFHGTSCGSTCNLVLDPK 338          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: D7G7H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7H6_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.080e-76
Identity = 170/355 (47.89%), Postives = 214/355 (60.28%), Query Frame = 1
Query:    1 MKAWQRINHWRRRSSKWSKSKNPPPEGSAQAEEETSRPAQAGAAHVILLVGELEDILLRVEQVQPNGNGEEEE-TKVDRSRQTYGP------KESTGEDPVVERLMRKQEELVRTGNNEMIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQ-KEEKSQGLPRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK 1041
            MK W +   WRRR SK S+ ++P P    Q+           +  ++ LV EL+    R+ + QP+ N EEEE TKVD SR +YG       ++  G D   ERL+RKQE LVR                                     EKAALEVA   ERAKTA Q+KTM FLR+TNIEAQS+  ELR+QVETL+      +G  +  E+++R GLA LVEKDLRKQVATL QS  +QA+EIR L  QLQ L+ NG P    ++TV S+QGA+AT ++LG++HPDC RL ADF  GW    G+AI R+FRITVP  V + H  YVR  GNVVQRFHG+SCRS+CNF++DPK
Sbjct:    1 MKLWHKATRWRRRGSKCSELESPLPRAPVQSV------GNHNSKSIVWLVSELDGNTSRIGENQPDVNQEEEEETKVDPSRHSYGAMGFVAEEQRRGGDNADERLLRKQE-LVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAALEVALLAERAKTARQQKTMHFLRETNIEAQSLETELRDQVETLKIASGHGEGRFQTKEEKVRSGLARLVEKDLRKQVATLEQSTGQQANEIRVLLAQLQVLQRNGEPHIDSVLTVGSTQGANATLSALGDSHPDCPRLRADFLSGWRTLTGLAIERIFRITVPAGVGETHAGYVRSHGNVVQRFHGTSCRSTCNFIIDPK 348          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: A0A6H5JEL8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL8_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 2.220e-71
Identity = 184/405 (45.43%), Postives = 230/405 (56.79%), Query Frame = 1
Query:    1 MKAWQRINHWRRRSSKWSKSKNPPPEGSAQAEEETSRPAQAGAAHVILLVG-ELEDILLRVEQVQPNGNGEEEETK--VDRSRQTYGPKEST------GEDPVVERLMRKQEELVRTGNNEMIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMR----FLRQTNIEAQSVGIELRNQVETLQKEEKS---QGLPRATEQRIRRGLALLVEKDLRKQVATLTQS------------------------------------------HSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK 1041
            MK   ++  W RRSSK SKSK PP    AQA+E    P Q     ++ + G E  +   R  Q     N EEEE K  VD S + YG KE        GE+    RL+RKQE L+R  + E I++L A+LL+   +L+R+E+MA  RLKAVEDEKAALEVA   ERA TAMQ+ TM      LR+  IEAQ +  EL  QVE L+KE+      G  +  +++IR GLA LVEKDLR QVATL QS                                            +QADEIR+L  Q+Q L+ +       ++T   +QG +AT ++LG+ HPDC RL ADFYP W  P  VAIV +FRITVP  VR KHL+YVR  GNVVQRFHG+SCRS+CNF+LDPK
Sbjct:    1 MKTLHKLTLWSRRSSKSSKSKIPPSVEPAQADE---TPVQVAHNTILFVDGREGSNNFSRFGQTLAYRNQEEEEEKTTVDSSHRAYGAKEFVSDEECRGEECPNVRLLRKQE-LLRKSDQEEIQKLRATLLQQKYDLQRNEKMALARLKAVEDEKAALEVALGAERANTAMQQITMNNMKNTLREKTIEAQLLESELGEQVEMLKKEKSKAAENGQRQTKQEKIRSGLARLVEKDLRTQVATLEQSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQVQDLQRSEERHIDSVVTFGRTQGFNATASALGDGHPDCPRLHADFYPFWEAPVEVAIVGIFRITVPAGVRDKHLSYVRSHGNVVQRFHGTSCRSACNFILDPK 401          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: D7FLK2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK2_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.440e-61
Identity = 144/302 (47.68%), Postives = 178/302 (58.94%), Query Frame = 1
Query:  283 VERLMRKQEELVRTGNNEMIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALEVANREERAKTAMQEKTMRF----LRQTNIEAQSVGIELRNQVETLQKEEKS---QGLPRATEQRIRRGLALLVEKDLRKQVATLTQSHSE------------------------------------------QADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK 1041
            VE  +R Q E ++   ++  +EL A+LL+   +L RSE+MA  RLK VEDEKAALEVA   ERA  AMQ+KT+ +    LR+ NIEAQ +  EL  QVETL+KE+      G  +  E +IR GLA LVEKDLRKQVATL QS  E                                          QADEIR+L  QLQ L+ N       ++T   +QG +AT ++LG+ HPDC RL A FYP W    GVA+V +FRITVP  VR KHL+YVR  GNVVQ FHG+SCRS+CNF+LDPK
Sbjct:   47 VEMELRSQVETLKQEKSQAEKELRATLLQWKYDLERSEKMAVDRLKVVEDEKAALEVALGAERANMAMQQKTINYMKNTLREKNIEAQLLESELGEQVETLKKEKSKAAEDGQRQTKEDKIRNGLARLVEKDLRKQVATLKQSIKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLVQLQDLQRNEEQHIDSVVTFGRTQGFNATASALGDGHPDCPRLHAKFYPRWEASVGVAVVGIFRITVPAGVRGKHLSYVRSHGNVVQCFHGTSCRSACNFILDPK 348          
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Match: A0A6H5JCZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.920e-39
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 1
Query:  421 AVEDEKAALEVANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQKEEKSQ----GLPRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEVNGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVAIVRMFRITVPESV 939
            AV DEK ALEVA   ERA TAMQ+KTM  LR+ +IEAQSV +ELR+QVE L KE+ SQ    G  +A E++IR G+A L+EKDLRKQVATL QS  +QADEI  L TQ+   + N  P  G + T    +G++AT ++LG+ HPDC RL ADFYPGW  P GVAIV +FRITV  S+
Sbjct:  710 AVADEKDALEVALGAERANTAMQQKTMYTLREESIEAQSVEVELRDQVEML-KEKMSQEAEIGRRQAKEEKIRSGVARLIEKDLRKQVATLEQSRMQQADEIGRLLTQV--FQQNEEPHIGSVATFGRGKGSNATASALGDDHPDCPRLHADFYPGWEAPVGVAIVGIFRITVCTSL 883          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16532.4702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G7H5_ECTSI8.810e-12585.11PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JJM5_9PHAE2.480e-11370.65PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7G7H4_ECTSI4.650e-8452.81PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7G7H6_ECTSI1.080e-7647.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JEL8_9PHAE2.220e-7145.43PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FLK2_ECTSI1.440e-6147.68PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JCZ5_9PHAE5.920e-3957.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16532contigEcto-sp13_S_contig16532:1473..3536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score83.2
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog2880.D8LS88
Model size1041
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28J37@1,2S14A@2759
Cds size1041
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.0534575-CDS-Ecto-sp13_S_contig16532:1472..22101681462869.0534575-CDS-Ecto-sp13_S_contig16532:1472..2210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16532 1473..2210 +
1681462869.0726974-CDS-Ecto-sp13_S_contig16532:2699..28851681462869.0726974-CDS-Ecto-sp13_S_contig16532:2699..2885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16532 2700..2885 +
1681462869.0825174-CDS-Ecto-sp13_S_contig16532:3419..35361681462869.0825174-CDS-Ecto-sp13_S_contig16532:3419..3536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16532 3420..3536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16532.4702.1prot_Ecto-sp13_S_contig16532.4702.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16532 1473..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16532.4702.1

>prot_Ecto-sp13_S_contig16532.4702.1 ID=prot_Ecto-sp13_S_contig16532.4702.1|Name=mRNA_Ecto-sp13_S_contig16532.4702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MKAWQRINHWRRRSSKWSKSKNPPPEGSAQAEEETSRPAQAGAAHVILLV
GELEDILLRVEQVQPNGNGEEEETKVDRSRQTYGPKESTGEDPVVERLMR
KQEELVRTGNNEMIEELHASLLKLHDNLRRSEEMAAVRLKAVEDEKAALE
VANREERAKTAMQEKTMRFLRQTNIEAQSVGIELRNQVETLQKEEKSQGL
PRATEQRIRRGLALLVEKDLRKQVATLTQSHSEQADEIRSLATQLQGLEV
NGVPLTGGLITVLSSQGASATFTSLGNAHPDCSRLCADFYPGWVVPGGVA
IVRMFRITVPESVRQKHLNYVRRLGNVVQRFHGSSCRSSCNFVLDPK
back to top

mRNA from alignment at Ecto-sp13_S_contig16532:1473..3536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16532.4702.1 ID=mRNA_Ecto-sp13_S_contig16532.4702.1|Name=mRNA_Ecto-sp13_S_contig16532.4702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16532:1473..3536+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTTGGCAAAGAATCAATCACTGGCGTCGGCGCAGCTCAAAATG GTCGAAGTCGAAGAATCCGCCGCCAGAAGGATCGGCGCAGGCCGAAGAAG AGACGTCGCGACCAGCACAAGCGGGGGCAGCACACGTGATCTTGCTCGTA GGTGAGCTTGAGGACATCTTGCTGCGGGTTGAGCAGGTTCAACCCAACGG CAATGGAGAGGAGGAGGAGACAAAGGTTGATCGATCCCGACAAACCTACG GACCCAAGGAGTCCACGGGTGAAGACCCTGTCGTCGAGAGACTGATGAGA AAGCAAGAAGAGTTGGTGCGCACGGGCAACAACGAGATGATCGAGGAACT GCATGCGTCCTTGCTGAAGCTTCACGACAACCTCCGAAGAAGCGAGGAGA TGGCTGCGGTCCGGTTGAAGGCAGTTGAGGACGAGAAGGCGGCGTTAGAG GTGGCCAACAGAGAAGAGAGAGCGAAGACGGCGATGCAGGAGAAAACCAT GCGTTTCCTTCGTCAGACGAATATCGAGGCGCAATCCGTCGGGATTGAGC TGCGAAATCAGGTGGAGACGTTGCAGAAAGAAGAGAAGAGCCAAGGGCTG CCCCGGGCAACGGAGCAGAGGATTCGGAGGGGGTTGGCACTGCTGGTGGA AAAGGACTTGCGGAAGCAGGTGGCAACGCTAACGCAATCACACAGCGAAC AAGCCGACGAAATTCGAAGTCTCGCGACTCAGCTGCAGGTGAAACTTGCT GTTGGATCCTGACATGAAGACTATGTGTAGCAAAACATAAAAGGGGGGTT GGGGGATGTTAATCGTAGATATCTATCGTAGGTTTGTTCTGCCGATCCGC TTTTCGGAGCATGAAGGTGCCCCATCCGCGTGGTGGGTAGAAGAACAAGG AAAAAAAAGAATGGGGTACCCCGAAGGTACAGTGTTACACTAGACGCCGC TGCTGTCGAAGGTCTCTCGTTCCACCGACCCTGCCTACATGCACTCGGAA CGAACGCACACCCATATCCTCGTTCGCGTTGCACAGAGGAAGAAGAAGAA GAGCCACTTTTGGGGGTAGAATAAGTGCTGCCCGAGAAGTAGACAGTACC ATCAAGAGCGCTGCCTTCCCCTCAACATTATTAGACGCCCTGTAAGGTGG GATGCCCTTATTACTAGACGCCCGGTAAGGTGGGATAACCTTCTGGTTGC TGATGTGTCGATCGCTCGTTTTGCCAGGGTCTAGAGGTGAACGGGGTACC GCTCACTGGGGGTCTTATCACCGTCTTGAGCAGCCAGGGTGCAAGTGCCA CGTTTACCTCCCTGGGTAATGCCCATCCAGACTGCTCCCGGCTGTGCGCC GACTTCTACCCCGGTTGGGTGGTGCCTGGCGGGGTAGCAATAGTGCGAAT GTTCAGGATCACGGTGCGGCCCTCTCCAGACGAAATCATGTGGTGTGAAA GTTATTGATATTGAGCAGCTTGGCTGTTCGCCGCTTGAGCATGTTTTTGC TGTAGCACGGTGTCCAGTCTGTGGCTGTTCTTGTCCCCGTATTCAGTGCT CATCGCAGAAACGTAAGCTAGACGCACACACCCCTCGGAGCTTTCTCATC AAAAAGGTTGTACAAGAATATTTTGCAACAAATCTTAATCTTTGTTGGAA GAGAACCTTGTTACGGAGTGTGTCCTCTTATTCGTAGTTGTTTGGAATTT AGGTGGCGCTAGGACGGCACGTTGTCGGAGGTTGAATACCTCGTTGTCTT CGTGTGACGACTACCACCGTGTAGAGACGCGGCGTCAAACACAGTGAATT GAAATGGCCTTCGGTGGGCAATGCGGAGTAGAGGGCTGCGCGGTTTTGCA GAAAGCCGATGTTCCGAAAGTGCCGGTCTGTCCTTTCGGCCAACAACACC GGGGTGCTGACGAAATTTGAATTCTCGCGACCTGCCCCCTCTTCAAGGTT CCCGAAAGTGTTCGTCAGAAGCACCTAAACTACGTACGGCGGCTCGGGAA TGTCGTCCAACGCTTCCATGGAAGCTCTTGCAGAAGCTCATGCAACTTTG TCCTCGACCCGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16532:1473..3536+

>mRNA_Ecto-sp13_S_contig16532.4702.1 ID=mRNA_Ecto-sp13_S_contig16532.4702.1|Name=mRNA_Ecto-sp13_S_contig16532.4702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16532:1473..3536+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTTGGCAAAGAATCAATCACTGGCGTCGGCGCAGCTCAAAATG
GTCGAAGTCGAAGAATCCGCCGCCAGAAGGATCGGCGCAGGCCGAAGAAG
AGACGTCGCGACCAGCACAAGCGGGGGCAGCACACGTGATCTTGCTCGTA
GGTGAGCTTGAGGACATCTTGCTGCGGGTTGAGCAGGTTCAACCCAACGG
CAATGGAGAGGAGGAGGAGACAAAGGTTGATCGATCCCGACAAACCTACG
GACCCAAGGAGTCCACGGGTGAAGACCCTGTCGTCGAGAGACTGATGAGA
AAGCAAGAAGAGTTGGTGCGCACGGGCAACAACGAGATGATCGAGGAACT
GCATGCGTCCTTGCTGAAGCTTCACGACAACCTCCGAAGAAGCGAGGAGA
TGGCTGCGGTCCGGTTGAAGGCAGTTGAGGACGAGAAGGCGGCGTTAGAG
GTGGCCAACAGAGAAGAGAGAGCGAAGACGGCGATGCAGGAGAAAACCAT
GCGTTTCCTTCGTCAGACGAATATCGAGGCGCAATCCGTCGGGATTGAGC
TGCGAAATCAGGTGGAGACGTTGCAGAAAGAAGAGAAGAGCCAAGGGCTG
CCCCGGGCAACGGAGCAGAGGATTCGGAGGGGGTTGGCACTGCTGGTGGA
AAAGGACTTGCGGAAGCAGGTGGCAACGCTAACGCAATCACACAGCGAAC
AAGCCGACGAAATTCGAAGTCTCGCGACTCAGCTGCAGGGTCTAGAGGTG
AACGGGGTACCGCTCACTGGGGGTCTTATCACCGTCTTGAGCAGCCAGGG
TGCAAGTGCCACGTTTACCTCCCTGGGTAATGCCCATCCAGACTGCTCCC
GGCTGTGCGCCGACTTCTACCCCGGTTGGGTGGTGCCTGGCGGGGTAGCA
ATAGTGCGAATGTTCAGGATCACGGTTCCCGAAAGTGTTCGTCAGAAGCA
CCTAAACTACGTACGGCGGCTCGGGAATGTCGTCCAACGCTTCCATGGAA
GCTCTTGCAGAAGCTCATGCAACTTTGTCCTCGACCCGAAG
back to top