mRNA_Ecto-sp13_S_contig1651.4689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1651.4689.1
Unique NamemRNA_Ecto-sp13_S_contig1651.4689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1651.4689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1651contigEcto-sp13_S_contig1651:8370..11685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_001260.1
Cds size1095
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.078572-CDS-Ecto-sp13_S_contig1651:8369..84981681462868.078572-CDS-Ecto-sp13_S_contig1651:8369..8498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1651 8370..8498 +
1681462868.087197-CDS-Ecto-sp13_S_contig1651:9459..98551681462868.087197-CDS-Ecto-sp13_S_contig1651:9459..9855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1651 9460..9855 +
1681462868.0956101-CDS-Ecto-sp13_S_contig1651:10873..113321681462868.0956101-CDS-Ecto-sp13_S_contig1651:10873..11332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1651 10874..11332 +
1681462868.1082103-CDS-Ecto-sp13_S_contig1651:11574..116851681462868.1082103-CDS-Ecto-sp13_S_contig1651:11574..11685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1651 11575..11685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1651.4689.1prot_Ecto-sp13_S_contig1651.4689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1651 8370..11685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1651.4689.1

>prot_Ecto-sp13_S_contig1651.4689.1 ID=prot_Ecto-sp13_S_contig1651.4689.1|Name=mRNA_Ecto-sp13_S_contig1651.4689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp
MGESRTSLIKGRDPEDVMSLARCLGRCKSTPDLSYTAASLLSKTLTARAT
RLESTASKARLAAEKEAYRRETVEKRRRALSPKNSSDFMRQTLRDREQAR
ESNRLRVERRRPGTPVLEESAAVCRRGTRRPKQGPLSDISLQLRFGESDH
DVHSICSSLGDSLAHGSGAGPPQRTEQTLTPHLRSTLTSDCVGLEDDDDI
RVLLHRAYSSSSSTRSESSGLSGKPKPASGHSYGRSRCTAESPLLHGRPS
AATCKGYVQRPHTAGATAMARSFDGKKLNPTDVAQLRREILICSLGEKRH
LHLYPTESFETTAMGRKARCRTPGRKAEVIPWMPAKTTDSRDRLQRSRML
MNQRPVVSKLHAWT*
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mRNA from alignment at Ecto-sp13_S_contig1651:8370..11685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1651.4689.1 ID=mRNA_Ecto-sp13_S_contig1651.4689.1|Name=mRNA_Ecto-sp13_S_contig1651.4689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3316bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1651:8370..11685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAATCGAGAACAAGTCTAATCAAAGGCAGGGACCCCGAGGACGT
CATGTCGCTCGCGCGGTGTCTCGGAAGATGCAAGTCAACTCCCGACCTGA
GTTACACGGCAGCATCACTTCTCAGCAAGGTGCGTGTTCCTGTTGTGCTC
TGACATCCAATGTTCAAAATCTATGCTGAGTCTAACGCATGACCATAGGG
ATCCGTGCGAGGCGGCAGAGTTGGCACACTACAATGTAAAAGACCATTCT
TTGCCTGTAGCCTTCGCGTAGCAATAACATTAGACTACCAACGCTAAAAG
GAATACTGCAAATGTGCATGTAGCCGTTTTTCGTGTACTGCTGTAAAGGA
GACATTACGGCGTTGCAATATGACAACATCCACTTTATCAAACGCCCTGT
CGATGCAGTACGGAGAAACGTGCATCTCTCGGTAGGATGGGGAAGCATTG
CAGCATATTTTCTTGTAGATCCCACCGTGCGACTCATGAGGAGATATCTC
ACTGTTCATGGAGGGTCATCTTTCTTGTTCTGGCCCCTCACGCATCCCAT
CAGAAGAAGGCAATGAGATTGCCGGAATTAAGACGCTCATGACAGTCGCC
TCTTTACACATCATGGAAATGTTTACGTAGGTAGAGGATTAATCTTACAG
AATTTTGTTGAAGTAGTCGAAAGGGGTCGCCAACTTGCTGTAATCGTTCT
TGTTCAGTTGGTTAGCTCGTAAGAGCTTCTGGCTCTAGGTTGTAGGCCCG
GATCTCTCCGTAGTGCAAAGCCTCGCAACCGTGTCGTGAAAAGGGCGCCG
AGTCGTGAGTGAAAAAGGCATGCATACAGAACACAAAACGAGGGAAGGCA
ATACATGTTGAACCCACGAAATCTGAACGCAAGCAGCACAGAAGGAAACA
GATAAAGAGAGAGAGAATGGCACCACAGGAGGAAATACAGAAAGAGATAA
TGCATCGTGGGATTACGTTCCTTTTCTGTATGACCTCGACTGGTACGTCA
AACATACCCCGAACGGTTATTGACTGCGCCGAGAATAAATGGCGCACTGA
TACACGTATCTACTTAATTGCTTTAACGTTTGACTGACAGACGCTTACTG
CCCGGGCCACTCGACTAGAGTCAACAGCAAGCAAAGCTCGCCTGGCGGCA
GAAAAGGAAGCTTATCGGAGAGAGACTGTCGAGAAGCGTCGAAGGGCGCT
GAGTCCGAAAAACTCTTCCGATTTCATGAGGCAGACACTTCGAGACCGAG
AACAAGCACGGGAGAGCAACAGACTTCGGGTAGAAAGACGGCGTCCGGGA
ACGCCAGTGCTTGAAGAGTCAGCAGCGGTGTGCCGGAGAGGAACACGGCG
CCCTAAGCAGGGGCCGTTATCGGATATTTCACTTCAACTTCGGTTCGGGG
AAAGTGATCACGATGTTCACTCCATTTGTTCATCGCTGGGCGATTCACTG
GCTCACGGCAGCGGCGCTGGACCACCGCAGCGCACGGTATAAATTGAATT
GATGTGTAAGATTTCAAGGAGAAACTATTGCGTCCCTGAAACGCACAGAA
CACGAGAATTTTCATAGCTGTCCTGACTATGAGGAGTAGACTATGAGGAG
TAGACTATGAGGAGTAGCGGAACAATCTTTGTCTCCAACATGAGGCCGCA
TCAATTGAAAGCCATTTCAAGTACAGGAGCGGCTACGGTTTAAGAGAAAA
TCTTCAAGATAAAGTACCGAGTTAAGAGAGTCGAGCTGGCTCGTCAGGAC
CGAAATCGATTTAAGAGAAAATTGCCATATTTCTGAGATTTCTCTGAAAC
CGAACCTCTTAAAAGAGCCACGTAGCCGTCACACACACAACTTGCAGACG
ACGCGCCCTGCGCGGCACGCAGACGCTGCACAGCGGTCCCCGATCACACC
CGAGGCCCACAACATTTCACAAACAACCGTTCGTAGAGCGAAAGAACGAA
CGTGTAACGAAATGTACCATTACACGACATCATTCAATTCACATTTCCGA
CACAGGTATCAGGAGTGTACCAAGTGCTTGCGGTGGGTACATTGACTGCT
CACCAAGCGAGGACCAAGAAACATAATTTGTTGGCAGCGCGTGGAGCTCG
CCCAAGATGCTATAAAAACTGGCGCGATGTAGCATGATGAGTTACATGCT
CTCCAAACAAAAAATCCTGTAGCTGGTTGAAACGGGAGCGTCCATATTCC
ATGGCCTGTAAAATGCTACGGTTTAAGAGAATATTCTCCTCAACCACGTG
CACGGTTCAAGAGAATATTTTGTTAAATCGCAGCCAACACGGTATAAGAG
AATATTCTCTCAAACCGTGGCAAATACGGTACTAGAGAAAGCCCGATTTT
AGAGAAAAAAGGGCGTCGTCACCATCCTCTCTAAACCGTAGCCACTACTT
GCTGTACTGATCGAGCCGTGGACAATGAAAATTCTCCCTGAAAATTCCAC
ACTTGTGTACATGACCAACGATCGATGCATTTGGAATTAATCCTGAATCC
CCAGGAGCAAACCTTGACCCCCCACCTAAGGTCCACCCTGACGTCCGATT
GCGTGGGCCTCGAAGATGACGACGACATCCGTGTTCTTCTCCACAGAGCG
TACTCGAGTTCCTCGAGTACCCGCTCAGAAAGCAGCGGACTCTCTGGGAA
ACCGAAGCCGGCGTCGGGCCACTCATACGGCCGATCACGTTGTACGGCAG
AATCACCACTTCTCCATGGCAGGCCATCCGCGGCGACTTGCAAGGGGTAT
GTGCAGAGGCCTCATACGGCTGGGGCGACCGCAATGGCGAGGTCGTTCGA
CGGAAAGAAGTTAAACCCAACCGACGTGGCTCAGCTTAGACGGGAGATCT
TGATCTGTTCGCTCGGCGAGAAGAGACATCTTCACCTATATCCGACCGAG
TCTTTCGAGACAACGGCGATGGGCCGGAAGGCGCGCTGTCGCACCCCGGG
GAGGAAGGCCGAGGTAAGAGAATTTGGCTTAAGACGATAAGCCACGATAT
GTTTTTCCTGATAGTAGTGTTGATGTATAGCAGCTGTAATAAAATCAGTC
CGGGCAAACAGTCTGCTTCAAGACTTCCTACAGCCGAGAAAAAAGCTAAC
AGTGCATCACTGTCGTTCGAGCTCACTCTCTATCGATCTTGTCATTTTGT
TTGCTCCCATACATCGATCACGCGAATATCCTGATCTCTGGCGAAAAACA
CTCAGGTCATCCCTTGGATGCCAGCGAAGACAACGGACAGCCGTGACAGG
CTCCAAAGATCCAGGATGCTGATGAACCAGCGGCCAGTAGTCTCAAAGTT
GCATGCATGGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1651:8370..11685+

>mRNA_Ecto-sp13_S_contig1651.4689.1 ID=mRNA_Ecto-sp13_S_contig1651.4689.1|Name=mRNA_Ecto-sp13_S_contig1651.4689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1651:8370..11685+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAATCGAGAACAAGTCTAATCAAAGGCAGGGACCCCGAGGACGT
CATGTCGCTCGCGCGGTGTCTCGGAAGATGCAAGTCAACTCCCGACCTGA
GTTACACGGCAGCATCACTTCTCAGCAAGACGCTTACTGCCCGGGCCACT
CGACTAGAGTCAACAGCAAGCAAAGCTCGCCTGGCGGCAGAAAAGGAAGC
TTATCGGAGAGAGACTGTCGAGAAGCGTCGAAGGGCGCTGAGTCCGAAAA
ACTCTTCCGATTTCATGAGGCAGACACTTCGAGACCGAGAACAAGCACGG
GAGAGCAACAGACTTCGGGTAGAAAGACGGCGTCCGGGAACGCCAGTGCT
TGAAGAGTCAGCAGCGGTGTGCCGGAGAGGAACACGGCGCCCTAAGCAGG
GGCCGTTATCGGATATTTCACTTCAACTTCGGTTCGGGGAAAGTGATCAC
GATGTTCACTCCATTTGTTCATCGCTGGGCGATTCACTGGCTCACGGCAG
CGGCGCTGGACCACCGCAGCGCACGGAGCAAACCTTGACCCCCCACCTAA
GGTCCACCCTGACGTCCGATTGCGTGGGCCTCGAAGATGACGACGACATC
CGTGTTCTTCTCCACAGAGCGTACTCGAGTTCCTCGAGTACCCGCTCAGA
AAGCAGCGGACTCTCTGGGAAACCGAAGCCGGCGTCGGGCCACTCATACG
GCCGATCACGTTGTACGGCAGAATCACCACTTCTCCATGGCAGGCCATCC
GCGGCGACTTGCAAGGGGTATGTGCAGAGGCCTCATACGGCTGGGGCGAC
CGCAATGGCGAGGTCGTTCGACGGAAAGAAGTTAAACCCAACCGACGTGG
CTCAGCTTAGACGGGAGATCTTGATCTGTTCGCTCGGCGAGAAGAGACAT
CTTCACCTATATCCGACCGAGTCTTTCGAGACAACGGCGATGGGCCGGAA
GGCGCGCTGTCGCACCCCGGGGAGGAAGGCCGAGGTCATCCCTTGGATGC
CAGCGAAGACAACGGACAGCCGTGACAGGCTCCAAAGATCCAGGATGCTG
ATGAACCAGCGGCCAGTAGTCTCAAAGTTGCATGCATGGACGTGA
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