mRNA_Ecto-sp13_S_contig1650.4685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1650.4685.1
Unique NamemRNA_Ecto-sp13_S_contig1650.4685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1650.4685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1650contigEcto-sp13_S_contig1650:7923..9380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size341
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.827571-CDS-Ecto-sp13_S_contig1650:7922..81071681462867.827571-CDS-Ecto-sp13_S_contig1650:7922..8107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1650 7923..8107 -
1681462867.836573-CDS-Ecto-sp13_S_contig1650:9224..93571681462867.836573-CDS-Ecto-sp13_S_contig1650:9224..9357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1650 9225..9357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.8458157-UTR-Ecto-sp13_S_contig1650:9357..93801681462867.8458157-UTR-Ecto-sp13_S_contig1650:9357..9380Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1650 9358..9380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1650.4685.1prot_Ecto-sp13_S_contig1650.4685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1650 7923..9357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1650.4685.1

>prot_Ecto-sp13_S_contig1650.4685.1 ID=prot_Ecto-sp13_S_contig1650.4685.1|Name=mRNA_Ecto-sp13_S_contig1650.4685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MTAGLNAISSGAPRVFRGRLILSTVWSDWLPGSALAYSSSPPETDRLPCA
TPTGFDVASRAVSPENAQRGDHGCCNEHLLLLSGTRGRTSVDCCGDGRDC
APSFHR
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mRNA from alignment at Ecto-sp13_S_contig1650:7923..9380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1650.4685.1 ID=mRNA_Ecto-sp13_S_contig1650.4685.1|Name=mRNA_Ecto-sp13_S_contig1650.4685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1650:7923..9380- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATTGTGTTCCTATGTACGGCGATGACAGCTGGTCTAAACGCAATATCA
TCGGGGGCGCCTCGTGTATTTCGAGGAAGGCTCATCTTGTCTACGGTTTG
GTCGGATTGGCTACCTGGCAGTGCTTTGGCATATAGCTCATCACCTCCGG
AAACAGGTGAAGCGTACATCAACAAGACTACATACTAACACGATTCCCGA
ACTACGGCAGGCATCATCGGAGCGACTTAGTCTAATTCCTAAAATTGTTC
GAATCAGTCGCAGATGTAGCCTACTGTACGTATTCGATGCTTTGTTGATT
TTTATCGTCGAGATGGGAAGGCCGACCGAGCCCTCGAACTGAAAGAGTTG
TGTACAGTAGTCTACGATCAAAGCAATCTTCGGAAGAGGGGACATTACTG
TCTGCAGGATACAGCATAGACTACGGCACGGCAACATCCCACGAGATGCG
CGATGGACACAAGCTTTCCTGATACCCCCATTCCTCCGTAGGATGTAGCT
GGTGTTTGCGAAGAAGGAGGAGCGAGTCGTAGGCACAGGATTGTTGTTGC
ATGATAGAGCGCAAGGATATTTTTTCCTGCCCAAAACTAAAACCGAACAC
ACACAACCTACAAGTACCTTTTATCTTATTATACATTCATTCAGAGATAA
TACATATAAACAACAACGCGAACACCTTTTCTCACGACGACACACAAGTC
CAAAGCGTATGAGAATCTGGCAACAACATGTATGGTGGCTTCGCTTGAAC
AGTCAACAAGAGACACATAACCAAAACGGTTTGTTTTTCGAAAAGTCAGT
CTGTGCCAGGTCCTTCCAAGAAGTCGCAAGTAGATAGTGAGTGGTACAAA
CACAGGATGGAGATCGGCGATATGGCAGTTCTTGAGGAAAACAAACTTTC
TCTCACAGGAGCGCCGGACCAACAAGGCCTGTTTCATCTGCTTAACACAT
TTTTGGCGCATGCTGCTGTAGTCGACTTGTGATTTCCATCTGCCTCGGTT
GAGGATAGCGGGTGCTCTCGGTCGTAGTTGGCCTCGTTATCCAGTACCTC
GAAAGACAACCCTCGCCAACGTCGTAAGAAAGACGGACCAGCCCTCGAAG
AAGACACTGAGCCAGTTACCCTTTTGGCCGAGAACCCGCCCCATCCTCGA
AGCGATGCAGCGACATCCCCATCACGAATATAACTGTGCTAAAGACAAAC
ATCTCTCGCTCGCTGCCCCTCTCCTTCTCTCCCGGACACTCTCATCGCTG
GCCTCGCGAACCCGGTCGAGTAGATCGTCTTCCATGCGCAACACCCACCG
GCTTCGATGTCGCCAGTCGAGCGGTGTCGCCGGAAAATGCACAGCGCGGC
GACCATGGTTGCTGCAATGAACATCTATTACTTCTCTCTGGAACTAGGGG
ACGCACTTCGGTGGACTGCTGTGGTGATGGTCGTGACTGCGCTCCCAGTT
TTCACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1650:7923..9380-

>mRNA_Ecto-sp13_S_contig1650.4685.1 ID=mRNA_Ecto-sp13_S_contig1650.4685.1|Name=mRNA_Ecto-sp13_S_contig1650.4685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1650:7923..9380- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTGGTCTAAACGCAATATCATCGGGGGCGCCTCGTGTATTTCG
AGGAAGGCTCATCTTGTCTACGGTTTGGTCGGATTGGCTACCTGGCAGTG
CTTTGGCATATAGCTCATCACCTCCGGAAACAGATCGTCTTCCATGCGCA
ACACCCACCGGCTTCGATGTCGCCAGTCGAGCGGTGTCGCCGGAAAATGC
ACAGCGCGGCGACCATGGTTGCTGCAATGAACATCTATTACTTCTCTCTG
GAACTAGGGGACGCACTTCGGTGGACTGCTGTGGTGATGGTCGTGACTGC
GCTCCCAGTTTTCACAGG
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