mRNA_Ecto-sp13_S_contig16448.4648.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16448.4648.1
Unique NamemRNA_Ecto-sp13_S_contig16448.4648.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: D7FXL6_ECTSI (DNA-damage-inducible protein f, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL6_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 7.440e-96
Identity = 166/176 (94.32%), Postives = 169/176 (96.02%), Query Frame = 1
Query:    1 EGVYGDKSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            E +YGD SSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGA+SSVELAALGPGTSVCDNLAYMCGFLAQ   VTTNLGASALASGDSLKADRATRTGIFVGLGAG VASAALLRYGR+LLQLFLGGNPA VSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK
Sbjct:  340 EAIYGDNSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQ---VTTNLGASALASGDSLKADRATRTGIFVGLGAGAVASAALLRYGRVLLQLFLGGNPA-VSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 511          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: A0A6H5L6W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W0_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 5.650e-77
Identity = 161/268 (60.07%), Postives = 166/268 (61.94%), Query Frame = 1
Query:    1 EGVYGDKSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLV-------------------------------------------------------------------------------------------TTNLGASALASGDS-LKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            E VYGD SSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGA+SSVELAALGPGTSVCDNLAYMCGFLAQAWLV                                                                                           TT+    A ++  + LKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPA VSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK
Sbjct:  331 EAVYGDNSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQAWLVLLADTSLTLSTAVVIGYAYSPLPPEREEQTLRKESEDKEGLEVYGMLKEGIRFKDYLHGPMDAGTKLKVKFRTGDMGLRERRRRHRTVDDKTTSSNVIAASNAKTVLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPA-VSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 597          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: UPI000D1C5C51 (protein DETOXIFICATION 46, chloroplastic n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C5C51)

HSP 1 Score: 112 bits (281), Expect = 7.790e-26
Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 1
Query:   16 DKSSNL-GMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            D S+NL   + ++ AF  P L +WLS PIMSL+DT+VVG  SS+ELAALGPGT VCD L Y   FL+ A    +NL A +LA  D  +A       +FV +  GVV    +    R +L  F+GGN A    V+P +  YV IRA  + AV V+MV Q A L  +D  +P+K
Sbjct:  117 DDSTNLVEEMRQIFAFAGPALGIWLSGPIMSLIDTSVVGITSSIELAALGPGTVVCDGLGYCFLFLSVA---ISNLVAISLAKKDETEAANHLARFLFVAVSCGVVMFTVIKLSSRTMLHAFVGGNTA----VIPAAACYVDIRAFAWPAVLVTMVGQGASLGMQDSVSPLK 281          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: D8R6V7_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R6V7_SELML)

HSP 1 Score: 111 bits (278), Expect = 9.530e-26
Identity = 73/163 (44.79%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   40 VTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            V ++ AF  P L +WLS PIMSL+DT+VVG  SS++LAALGPGT +CD L+Y+  FL+ A   T+NL A++LA+ D  +A       +FV  G G+   AA+      +LQ F+G   A  S ++P + +YV IRA  + AV V+MV QSA L  +D  +P+K
Sbjct:    5 VRQIFAFAGPALGIWLSGPIMSLIDTSVVGTTSSLQLAALGPGTVMCDGLSYVFMFLSVA---TSNLIATSLANKDEKEAANHLARLLFVAFGCGMAMLAAIRFSSSSMLQAFVG---AKNSGIVPAAATYVNIRAWAWPAVLVTMVAQSASLGMQDSWSPLK 161          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: W7TLJ7_9STRA (Dna-damage-inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLJ7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.340e-25
Identity = 68/170 (40.00%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   16 DKSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPI 525
            D    +  +  L+ FT+P L +WL+ PIMSLVDT+VVG  S +ELA +GP T++CD+  Y+  FLA A   TTNL A ALA GD  K+       + + LGAG++    +   G+ +L   +G +   +   +P +  Y  IRA+G   V V MV QS+ L  KD  TP+
Sbjct:  146 DSKQAVPTLAALLRFTIPTLGIWLAGPIMSLVDTSVVGLSSDLELAGMGPATNLCDSFIYLFTFLAVA---TTNLLAGALADGDEAKSQTVVSHALAIALGAGILVMLVIEFAGKRMLAATIGADGPLL---IPVALKYTNIRALGAPFVLVGMVAQSSLLGAKDSVTPL 309          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: A0A7S4B777_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B777_CHRCT)

HSP 1 Score: 110 bits (276), Expect = 4.650e-25
Identity = 67/172 (38.95%), Postives = 98/172 (56.98%), Query Frame = 1
Query:   13 GDKSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAK-SSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPI 525
            GD +  +  + +L  F +P L +WLS+P++S++DTAVVG   S+ +LAALGP T +CDN+AY    +  A   TTNL A A ASG   KA R     + + LG G   +  L      L+   +G + AA    +  +  Y  IRA+G+ A   +MVLQ+A+LA KD  +P+
Sbjct:  141 GDGAVRMPRLQQLAVFAIPTLAIWLSSPLLSVIDTAVVGKVCSTAQLAALGPSTKMCDNIAYFASAIGAA---TTNLAADAFASGHPNKAHRIVGGSLTIALGLGFAIAVGLRMAATPLMTTMVGASSAAA---IAPAAQYTAIRALGYPAALTTMVLQAAFLASKDATSPL 306          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: D8QNB4_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QNB4_SELML)

HSP 1 Score: 109 bits (273), Expect = 4.850e-25
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 1
Query:   40 VTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            V ++ AF  P L +WLS PIMSL+DT+VVG  SS++LAALGPGT +CD L+Y+  FL+ A   T+NL A++LA+ D  +A       +FV  G G+   AA+       L  F+G   A  S ++P + +YV IRA  + AV V+MV QSA L  +D  +P+K
Sbjct:    5 VRQIFAFAGPALGIWLSGPIMSLIDTSVVGTTSSLQLAALGPGTVMCDGLSYVFMFLSVA---TSNLIATSLANKDEKEAANHLARLLFVAFGCGMAMLAAIRFSSNFFLSAFVG---AKNSGIVPAAATYVNIRAWAWPAVLVTMVAQSASLGMQDSWSPLK 161          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: A0A8J9WM82_9CHLO (Protein DETOXIFICATION 46, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WM82_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 1.550e-24
Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = 1
Query:   16 DKSSNLGMVT----ELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPI 525
            D SS+ G  +    EL+ FTLP L +W+ NP++SLVDT+VVG +S+ ELAALGPGT +CD  AY+  FLA A   TTN+ A + A  D  +A       +F+ LG GV  + A+  Y    LQ   G   AAV   +  + +YV +R +G  A  V  V Q+ +LA  D  TP+
Sbjct:  148 DSSSDAGEASLGAWELLRFTLPTLGIWIINPVLSLVDTSVVGTRSARELAALGPGTMLCDGNAYIFTFLAAA---TTNMLAISFARRDKAQASGILSDALFISLGLGVALAIAMYFYAPPALQRIAGQASAAV---VEPAVTYVRVRCLGLPAALVIFVAQAFFLAAMDPMTPL 315          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: A0A7S2BI95_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BI95_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.720e-24
Identity = 76/175 (43.43%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   16 DKSSNLG---MVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSV-ELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLR-YGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPI 525
            +K S +G   M+ ++  FTLPLL VWLSNP++SL+DTA VG  + V  LAALGP T++CD   Y+  FL    +VTT+  ASA A  D   A R     +      GV  SA LL   G  +++ F+   P A   +LP S SY  IRA GFV    S+VLQ++ LAR+ I+ P+
Sbjct:  224 EKESGVGIKAMLADIRLFTLPLLAVWLSNPLLSLIDTAAVGNFAGVYHLAALGPATALCDQGTYLLSFLT---IVTTSQLASAFARNDKKDASRNVEDALLASFICGVAWSALLLSPLGVPVVKSFI---PKAAQDILPLSLSYARIRAFGFVPALASLVLQASSLARRAISIPL 392          
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Match: A0A0D3B7L8_BRAOL (Protein DETOXIFICATION n=11 Tax=Brassiceae TaxID=981071 RepID=A0A0D3B7L8_BRAOL)

HSP 1 Score: 107 bits (268), Expect = 4.670e-24
Identity = 71/165 (43.03%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   34 GMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVELAALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTGIFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIK 528
            G + E+V FT P   +W+  P+MSL+DTAV+G  SSVELAALGP T VCD L+Y   FL+ A   T+NL A++LA GD  +        +F+GL  GVV  A    +G  +L  F G   A    ++P + +YV IR + + AV +  V QSA L  KD   P+K
Sbjct:  105 GQMKEIVMFTGPAAGLWICGPLMSLIDTAVIGQGSSVELAALGPATVVCDYLSYTFMFLSVA---TSNLVATSLARGDKDEVQHQISILLFIGLACGVVMMAFTRLFGSGVLAAFTGAKNA---EIVPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLK 263          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16448.4648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL6_ECTSI7.440e-9694.32DNA-damage-inducible protein f, putative n=1 Tax=E... [more]
A0A6H5L6W0_9PHAE5.650e-7760.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000D1C5C517.790e-2644.77protein DETOXIFICATION 46, chloroplastic n=2 Tax=S... [more]
D8R6V7_SELML9.530e-2644.79Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
W7TLJ7_9STRA3.340e-2540.00Dna-damage-inducible protein n=2 Tax=Monodopsidace... [more]
A0A7S4B777_CHRCT4.650e-2538.95Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
D8QNB4_SELML4.850e-2544.17Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A8J9WM82_9CHLO1.550e-2441.95Protein DETOXIFICATION 46, chloroplastic n=1 Tax=C... [more]
A0A7S2BI95_9STRA1.720e-2443.43Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A0D3B7L8_BRAOL4.670e-2443.03Protein DETOXIFICATION n=11 Tax=Brassiceae TaxID=9... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16448contigEcto-sp13_S_contig16448:151..3244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score307.0
Seed ortholog evalue5.7e-81
Seed eggNOG ortholog2880.D7FXL6
Model size528
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
Cds size528
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.808345-CDS-Ecto-sp13_S_contig16448:150..2811681462864.808345-CDS-Ecto-sp13_S_contig16448:150..281Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16448 151..281 -
1681462864.8206744-CDS-Ecto-sp13_S_contig16448:821..9331681462864.8206744-CDS-Ecto-sp13_S_contig16448:821..933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16448 822..933 -
1681462864.830982-CDS-Ecto-sp13_S_contig16448:1232..12921681462864.830982-CDS-Ecto-sp13_S_contig16448:1232..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16448 1233..1292 -
1681462864.8469348-CDS-Ecto-sp13_S_contig16448:1926..20681681462864.8469348-CDS-Ecto-sp13_S_contig16448:1926..2068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16448 1927..2068 -
1681462864.8580935-CDS-Ecto-sp13_S_contig16448:3161..32441681462864.8580935-CDS-Ecto-sp13_S_contig16448:3161..3244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16448 3162..3244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16448.4648.1prot_Ecto-sp13_S_contig16448.4648.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16448 151..3244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16448.4648.1

>prot_Ecto-sp13_S_contig16448.4648.1 ID=prot_Ecto-sp13_S_contig16448.4648.1|Name=mRNA_Ecto-sp13_S_contig16448.4648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
EGVYGDKSSNLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAKSSVEL
AALGPGTSVCDNLAYMCGFLAQAWLVTTNLGASALASGDSLKADRATRTG
IFVGLGAGVVASAALLRYGRMLLQLFLGGNPAAVSSVLPHSCSYVYIRAM
GFVAVTVSMVLQSAYLARKDIATPIK
back to top

mRNA from alignment at Ecto-sp13_S_contig16448:151..3244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16448.4648.1 ID=mRNA_Ecto-sp13_S_contig16448.4648.1|Name=mRNA_Ecto-sp13_S_contig16448.4648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16448:151..3244- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGTGTATACGGAGACAAAAGCTCTAACCTCGGCATGGTGACCGAGCT CGTGGCCTTCACGCTGCCGCTGCTGGTCGTGTGGTGAGTTGGCTAGAACG GATGTTATGCACTGCAACTCAGCGAAAACTCTTCTCTTTGTTCGGGGGTT TACTTTTGTTGTTGTTGTCGTGATCGTTGTTTCTGTTGTTTCGGTGGTTC TGGTGCGGTCTACCGGAACGCACCTCGATCAGCTACCCTTCGAACCCTCC AAGAACTGTATTTTATTTTGTGATCCTGTTCCTGTTCGCGCAGGGGGGAC AGCGCTAATTGCCGCGCGCCAAATAGGAAAGATAGCGCCGGTGGATTTTT GTACGGGGAATGCGGTGTCCAAATCAAGTCCGCCCGCGTTGCTTGACATG GCGCGACTTTGTTTTTGCGGGGAAGAAGTTTTCAACCGCGGCAAAGCTGT AAGACCGACGCGAGGTGTATGTTGGCGCTTTCACCGGGTGGGATAGCACT CGCCGTCGAAGCGAGCCGGACGACGAGGTTTCCACCACGAATAAAAAAAC AAGCAGGCGCCTTCCTTCCTCCCCCGCCCTCCGCGTTCTGGCCTCACCAC CCGTTTGTCCCGAAGCCGAAAAACAAACATGAATCTCATTCACCTTGTAG CCTCTTGCGCTGCCCCCCCCCCAGCACTGAGTCCTCTCCAACTCCCCCCT TTCCAGTTTGCTGGTTTGCTCATGTTACGTACATGCAGTAGTGTCCCGGT TTGGCGGTTCCCTGTTTGGCGGGATGCCCTGAAGTTCCGAACTATCGTGG CAAGGCTGCACCTCGGTAGCCAAGCTACTCTTCTAATTTTTGTAATATGT TACCAACCCGTTTAGTGGCGATGACCTCAAAAGCGGTTGTAACATGTTTC GACGCTTTCGACCGCTAAACCGGGACCACAGCCGCTGTGTGTATATATCA CATCACATGTGAAAACGCGTCCGTCCGTGGCTTGATTTTTTTTTTTTTTT GCAAGCTTTCCAACCCCATCATGTCGTTGGTCGACACTGCGGTCGTGGGA GCTCCGTGGCTTGATTTTTGTTTTCTTTGGCAGGCTTTCCAACCCCATTA TGTCGTTGGTCGATACCGCGGTCGTGCGGGCCCCGTGGTTTGATTTTTTT TGCTTGCTTTTTGTTTACTTTGACAGGCTTTCCAACCCCATCATGTCGTT AGTCGATACCGCCGTCGTGGGGGCTAAGAGTTCCGTCGAGCTCGCGGCGC TGGGACCGGGTACATCAGTGTGCGACAACCTGGCCTACATGTGCGGCTTC CTCGCTCAGGCATGGCTTGTTCTACGTCTGTGCTTTTGCTGTTGATTGGT TGGATCCTCAAGCTCGTAATTCTGTGTTACGTAGCTCAGGCATGGTTGCT GTGCTTGGAGACGTGACAAAAGAGGTCGGAGTTCGTTGTAATCGGTTCTC GATTCGGCATGATTATGTCTGAAGACGTGGCAAGGGATTGGATTTGATCG TAATTGATGTCCGCCCAGGAATTGATTTGTGCTTGAGGGCTTGGACTGCT GTATTTTATCAGCTGGTCGTTTCGTCGGGGTGGTGACAAGAGGTGTGCCT AGAGGAGGATGGGTGGTTGCGCATCGTCCCGCAGGGCTAGCTGTCCCTCG CTTGCGGAGGGAGCGAGCAGGGAACATTTTATCCTTTTTTTTCTTGGCTC TCGGTTGGAGTGGCAGCCACGGGTGTTCATTATTCAGTCGTGGACACATC CTTGATCCTACGCACAGCTGTCGTCATCGGTGACGCATGTTCCCCCTCCC CCCCCCCCGAATGTTGTCGAGAAAGCAGGAGTCTGATACCATCCTCTCCT CTCTCTCCTTCTTGTATCTCATCTCCTGTGCCCTGATCGTCATCTCTCTC GGGTATGTACCCTTATTGGCTCAACTCCTTCCTGTCTCCTCCCCCCGAAC AGGTTACTACGAACCTTGGTGCCAGCGCTCTTGCTAGCGGCGACAGCCTC AAGGCAGACCGGGTGAGTGGCTTTACCTCTTGACGACAGGCCGTTTTTTT TGTTTCTTTTGCTGTCGTTTTTGCTTTTTTGATCTTGGCGTGTCGCCGCT TGCGTGCAAATAAAAAGCTATTATAGCGGCCACCCTAAAACACGTAACCT CCCGGGAGGATATAAAGCTTGGTTTTAGTAGGGGTGGGGTTCGCGTTACG AATCCCCCCTCTTATTTATTGCTACATAGATAAATAGTAAAATGCTTGCG AAGGTGGTCCCCCTTCAACCCCCCTGCTTCCATCCCCAATACCGTCCCGC CGTCCCGCCAGGCCACCCGCACTGGAATCTTTGTCGGTCTTGGCGCGGGT GTGGTCGCCTCGGCTGCCCTTCTGAGATACGGCCGGATGCTCCTGCAGCT CTTTCTTGGCGGGAACCCAGCCGGTACGGCAGTACGCATTGATGCTTTTC TCGTTTTGGACCTTTGTCCCCCACTTGAATCGTTTGTGCTTCGTTTTCGT GAATCTTTTGTGCTCTGTTATTGTAGTGCAGGGGACGATTTTTTGTTCTG TGGGAGAAAGAATTGCTGGCACAATGATGAGGAGAGACGTAATCCATTGT ACTGTTGCCTTGCAGACAAGGGTAAACGAGCGAGCTTTGCGGAACCAGCT CGCCCCCGCCTTGTTCGCGTTTGTGTGCTCAACGCCAGCACGATGCTCGG TTTACGAAATCGACCGAAATCGACCGAAACGTCGCCTTCCCCCCCATCCG GGATTAAGAAGGGTGCCCGCGGTCGGTAGGTGGCAAGTTGTAGCCCCCCT CCCATCAAATAGCGACGGCCGTATGTAATTTTTGTTCCCCCTCCCTCGCG TAAGAATATTATTGCCGTCGTGCTACCGATCAATCCATCGAATCACGGGG AACGACAGCGCCGTTCGTGAAACCGTCGTTCGTTTTTTTTTTTTTTCTCT ATTCGCGCGCGAGCAGTGTCTTCCGTGCTTCCCCATTCTTGCTCGTACGT GTACATCCGGGCCATGGGCTTCGTGGCCGTGACGGTGTCGATGGTGCTCC AGTCGGCTTACCTCGCTCGGAAGGACATCGCCACGCCAATCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16448:151..3244-

>mRNA_Ecto-sp13_S_contig16448.4648.1 ID=mRNA_Ecto-sp13_S_contig16448.4648.1|Name=mRNA_Ecto-sp13_S_contig16448.4648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16448:151..3244- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGTGTATACGGAGACAAAAGCTCTAACCTCGGCATGGTGACCGAGCT
CGTGGCCTTCACGCTGCCGCTGCTGGTCGTGTGGCTTTCCAACCCCATCA
TGTCGTTAGTCGATACCGCCGTCGTGGGGGCTAAGAGTTCCGTCGAGCTC
GCGGCGCTGGGACCGGGTACATCAGTGTGCGACAACCTGGCCTACATGTG
CGGCTTCCTCGCTCAGGCATGGCTTGTTACTACGAACCTTGGTGCCAGCG
CTCTTGCTAGCGGCGACAGCCTCAAGGCAGACCGGGCCACCCGCACTGGA
ATCTTTGTCGGTCTTGGCGCGGGTGTGGTCGCCTCGGCTGCCCTTCTGAG
ATACGGCCGGATGCTCCTGCAGCTCTTTCTTGGCGGGAACCCAGCCGCAG
TGTCTTCCGTGCTTCCCCATTCTTGCTCGTACGTGTACATCCGGGCCATG
GGCTTCGTGGCCGTGACGGTGTCGATGGTGCTCCAGTCGGCTTACCTCGC
TCGGAAGGACATCGCCACGCCAATCAAG
back to top