mRNA_Ecto-sp13_S_contig16440.4644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16440.4644.1
Unique NamemRNA_Ecto-sp13_S_contig16440.4644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 4.680e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:    1 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEKDYIVPKSCEANLLGPRGR 270
            MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYY V+EVPKLASDGYENAPTLVGMADVFVNNLGY+WNEKDYIVPKSCEANLLGPRGR
Sbjct:  437 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYTVIEVPKLASDGYENAPTLVGMADVFVNNLGYVWNEKDYIVPKSCEANLLGPRGR 526
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.760e-39
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEK 216
            MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEK
Sbjct:  825 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEK 896
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: D7FK32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK32_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.830e-37
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEKDYIVPKSCEANLLGPR 264
            MIE H L +V  +  F  AVANGDSE AR+LSTY+A VEVPK ASDGYEN PTLVGMADVF+N LGY+WNEKDYIVPKSC+++L GPR
Sbjct:   51 MIEEHYLVEVDKDWLFFQAVANGDSEVARFLSTYHATVEVPKPASDGYENIPTLVGMADVFINKLGYVWNEKDYIVPKSCKSHLFGPR 138
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: D8LU03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU03_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.200e-37
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEKDYIVPKSCEANLLGPRG 267
            M++G RL  V+ ++ F+DA+A+ +  AARYLSTYY  VE PK ASDGYENAPTLVG+ADVF+N LGY+WN KDY+VPKSC++ L G RG
Sbjct:    1 MLDGSRLDAVKGSRHFIDAIADENPAAARYLSTYYTEVETPKRASDGYENAPTLVGIADVFINKLGYVWNAKDYVVPKSCKSELFGQRG 89
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.950e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   19 LAQVQMNKRFVDAVANGDSEAARYLSTYYAV-VEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEK------------DYIVPKSCEANLLG 258
            L ++ ++++F+DAV  GD  AA YLST YA  V V K ASDGYE+ P +V MADV+V   G+ WN+K            + + P SC++ + G
Sbjct:   67 LYELPISQKFLDAVEEGDDMAAMYLSTNYATEVTVVKEASDGYESVPAVVSMADVYVEEHGFFWNDKARLCQLIPWCIWNLVAPNSCQSLVNG 159
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: D8LB14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB14_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   85 RYLSTYYAVVEVPKLAS----DGYENAPTLVGMADVFVNNLGYIWNEKDYIVPKSC 240
            R+LS YY   +V   +S    +GYE  PTLV + DVF+N+ GY+WNEK+YIVPKSC
Sbjct:  490 RHLSVYYPGPDVDMASSFSSDNGYEGVPTLVSLTDVFINSSGYVWNEKNYIVPKSC 545
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: A0A6H5JM68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM68_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.980e-8
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   88 YLSTYYAVVEVPKLAS----DGYENAPTLVGMADVFVNNLGYIWNEK---------------DYIVPKSC 240
            +LS YY   +V   +S    DGYE  PTLV +ADVF+N+ GY+WN+K               +YIVPKSC
Sbjct:  838 HLSVYYPGPDVDMASSFSRDDGYEGVPTLVSLADVFINSSGYVWNDKARLTARLSMNWHGRKNYIVPKSC 907
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BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Match: A0A6H5KEC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.980e-6
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   85 RYLSTYYAVVEVPKLAS----DGYENAPTLVGMADVFVNNLGYIWNEK 216
            R+LS YY   +V   +S    +GYE  PTLV +ADVF+N+ GY+WN+K
Sbjct:   59 RHLSVYYPGPDVDMASSFSSDNGYEGVPTLVSLADVFINSSGYVWNDK 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16440.4644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FK27_ECTSI4.680e-5396.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH3_9PHAE1.760e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK32_ECTSI2.830e-3772.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU03_ECTSI5.200e-3764.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMF5_9PHAE1.950e-1341.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB14_ECTSI1.660e-1155.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM68_9PHAE3.980e-844.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEC0_9PHAE5.980e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16440contigEcto-sp13_S_contig16440:1404..3182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.9
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D7FK32
Model size271
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Protein of unknown function (DUF563)
EggNOG OGs2E14A@1,2S8GN@2759
Cds size270
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.5854185-CDS-Ecto-sp13_S_contig16440:1403..14571681462864.5854185-CDS-Ecto-sp13_S_contig16440:1403..1457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16440 1404..1457 -
1681462864.5960515-CDS-Ecto-sp13_S_contig16440:2123..22531681462864.5960515-CDS-Ecto-sp13_S_contig16440:2123..2253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16440 2124..2253 -
1681462864.6049318-CDS-Ecto-sp13_S_contig16440:3096..31821681462864.6049318-CDS-Ecto-sp13_S_contig16440:3096..3182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16440 3097..3182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16440.4644.1prot_Ecto-sp13_S_contig16440.4644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16440 1404..3182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16440.4644.1

>prot_Ecto-sp13_S_contig16440.4644.1 ID=prot_Ecto-sp13_S_contig16440.4644.1|Name=mRNA_Ecto-sp13_S_contig16440.4644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYAVVEVPKLASDGYEN
APTLVGMADVFVNNLGYIWNEKDYIVPKSCEANLLGPRGR
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mRNA from alignment at Ecto-sp13_S_contig16440:1404..3182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16440.4644.1 ID=mRNA_Ecto-sp13_S_contig16440.4644.1|Name=mRNA_Ecto-sp13_S_contig16440.4644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1779bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16440:1404..3182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAAGGACATCGTCTGGCTCAAGTACAGATGAACAAACGTTTCGT
CGACGCCGTTGCGAATGGAGACTCTGAAGCGGCAAGGTGAGGGTTCGACG
TTTGTCATCATCGCAATGGAGTACCGATAGTCATGTGGAAGCCTTGCTGA
TTTTGCTTTCCGTAAGGAACACTATCGATGAAACAGTCGACACTATCCGA
CGATATGTATTTTACGAAAAACTTGTTCCACACAAAGGGGCGCAACACGC
AATGGATTTTGTAACAAAAATAGAGTACGCCGAGGCACGAATGGAGATGC
CTAGGGCTTTGGCGCACAACGGGGTACTCGCCGGTTCTGGAATGGGTAGG
GAATGCGTTTTTCTTGCCTCTAGCAACAAAAGGCCACGCGTGGGGGTGTG
CGGCCGGTAACGGCCGGCAGTCACATGATATGCGCCGTAATATGAGATTA
TCAAGTAAGCAGGTAGAAGAAAGACCGACATTACGAAGCCGAGGCCTACC
TACCCTGAATCGAATGTTGCGACCTGTAGCCGTCCTTTGAACAACGACCT
CAAGTAACTGCCCCACGCACAGCGACGTAGGTATGAGGAAGTTGAAGCTT
TGGTTAGTGTTTGCGAGGTGATCGATCACGTCAATTGTCTGCGTAAGTAT
TTGCACTTGAGCGAGAAGATTGACACGGTACAATCTTCAGACACAATTGT
ATTCGCCCTTCGCAGGAGGTGTCACAATGCAACGTGAGTGGTACTTCCGC
TGGAAATTGGCGACATGGACAAGAAAATGTTGCTGAATCAGCGAGCGTTT
CCTTGCAGCAGCATTTTGTCGCCATGAATACACCTACAGTGAGTGGAAGC
CGGCGCGCTCCAGTGTGTATCTTCGCACCGAGATTCTCTTCCATCCATTG
CTTACTGCGATGTTTTCGCGTTTCGGAAGGTATTTGAGCACGTACTACGC
GGTCGTCGAGGTGCCCAAGCTGGCGAGTGATGGCTATGAAAACGCTCCAA
CCCTGGTGGGTATGGCGGACGTGTTTGTGAACAACTTGGGCTACATCTGG
AATGAGAAGGTAAGAGCGGAAATCCTCAACGGCGTTCACAGACAGGCGTT
CACACCGAAGACTTAGCTTCCACCTGAGACGGGATAGGGAGGAAATTCGG
ACAGTGAGGGTTTGAAACCTTCCCGGTTGGAACACAACGACCTCCGCAGT
TCAGCGGTTGCTCGAAGTCCCGTAGATCGACTGCTTCGGTACTTGGGAAC
GAGCCTTGCACACTAAGCAGTCCTCGAAAACTCCCTGTCTACCGCCTGTC
AAATAGAAGCTGCTTGTAACAGGCAAGGGCATATCTTTGTTGTTGATGCT
TCATCATTTGTTGTGTTGAACGAGAGCAAACAAAGAATAAAAAGGGTTAG
CGTAACGAAAATTGAGACAAATAGGCAAGAATCGGCCTTAGATGCTGCGG
GCATGATAATGATTGGATACAACCGAATCAGGACCTACACAGAGGAACGC
TCGTGTCTTCCCAGGACTCATTTCAAGTATCGGCGCCAAATTGGAGTGCC
TTTTGCTAAATGATATTATTCACAATGCCGCACCGGACAAGCACACATAC
TCCTTTCCGTTCGCAGACTTCCATCGTTGATTTTCTGCGTCATCGACACT
CCTGCTCGGGTCAAGCTTATCTTCCTTTGGTGTCGTCTCTCCCTCGTTTT
CACGGTTGACCTCACCTGTCGGAAGGACTACATCGTCCCGAAATCCTGCG
AGGCTAATCTTCTAGGTCCTCGGGGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16440:1404..3182-

>mRNA_Ecto-sp13_S_contig16440.4644.1 ID=mRNA_Ecto-sp13_S_contig16440.4644.1|Name=mRNA_Ecto-sp13_S_contig16440.4644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16440:1404..3182- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAAGGACATCGTCTGGCTCAAGTACAGATGAACAAACGTTTCGT
CGACGCCGTTGCGAATGGAGACTCTGAAGCGGCAAGGTATTTGAGCACGT
ACTACGCGGTCGTCGAGGTGCCCAAGCTGGCGAGTGATGGCTATGAAAAC
GCTCCAACCCTGGTGGGTATGGCGGACGTGTTTGTGAACAACTTGGGCTA
CATCTGGAATGAGAAGGACTACATCGTCCCGAAATCCTGCGAGGCTAATC
TTCTAGGTCCTCGGGGGCGA
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