mRNA_Ecto-sp13_S_contig1638.4606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1638.4606.1
Unique NamemRNA_Ecto-sp13_S_contig1638.4606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1638.4606.1 vs. uniprot
Match: D8LHF6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF6_ECTSI)

HSP 1 Score: 630 bits (1625), Expect = 1.120e-221
Identity = 417/519 (80.35%), Postives = 422/519 (81.31%), Query Frame = 1 
Query:    1 MLSAVADAPSGGDRSDGCGGVAGERERRSFSASDAAAAAHDARDAGPETSRRKRVDAAPPAATAAAAPLLEPAGPSFPAGVEHEHAVPVATPTRRHRRHSFSGKDSPPHPIPSAEGVTSNSRDSREVASARPAAGCGGRGESVPSPSVSPAHTPVTPQRHPTDQRHQAAGHSSAGVSTPPSPAYFTGRLGDHASGVGVGGNTGGSPSRSGGACSPALGSQSXXXXXXXXXXXXXXXXXXG----GYTSPARAPHVTTPSGPMGPAGVQPSLQPSPPXXXFDXXXXXXXXSLSAIGSSHGAGGXSGGPAVGDPGAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGPHCECWAWSASAGGYAAAAVRSPSASYLATASNPYGSPGKEAAGSGGXXXXXXXXXXXXXGG-AFLGSIWNTAVNTFRGVAGGHARRASWSAARGRGGQQHRASVLPPTAAVSPAHVRGASSPRERQQQQHLSPHSNVRKGGRVSGSPLGSPCGGRSNSDGRGSNN 1542
            MLSA ADAPSG                           AHDARD GPET  RKRVDAAPPAA    AP L PA PSFPAG EHEHAVPVATPTRRH RH FSGKDSPP P+P+AEGVTSNSRDSREVASA PAAG GGRGESVPSPSVSPAHTP TPQR PTDQRHQAA HSSAGVSTPPS AYFTGRLGDHASGVGVGGNTGGSPSRSGGACSPAL SQSXXXXXXXXXXXXXXXXXX     G TSPARAPHVTT +GPMGPAGVQP LQPSP XXX  XXXXXXXX             XSGGPAVGD GAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHG HCECWAWSA+AGG  AAAV SPSASYLATASNPYG PGKEA     XXXXXXXXXXXXX   AFLGSIWNTAVNTFRGVAGGH RRASWSA RGRGGQQHRASV PPTAAVSPAHVRGASSPRERQQQQHLSPHSN RKG RVSGSPL SPC GRS+SD R  NN
Sbjct:    1 MLSAAADAPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXAHDARDTGPETGGRKRVDAAPPAA----APPLGPARPSFPAGAEHEHAVPVATPTRRHHRHGFSGKDSPPRPVPAAEGVTSNSRDSREVASAGPAAGYGGRGESVPSPSVSPAHTPATPQRQPTDQRHQAAWHSSAGVSTPPSAAYFTGRLGDHASGVGVGGNTGGSPSRSGGACSPALDSQSXXXXXXXXXXXXXXXXXXXXXXXGRTSPARAPHVTTLAGPMGPAGVQPPLQPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGPAVGDLGAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGSHCECWAWSANAGG-CAAAVMSPSASYLATASNPYGGPGKEAXXXXXXXXXXXXXXXXXXXXXAFLGSIWNTAVNTFRGVAGGHGRRASWSAVRGRGGQQHRASVSPPTAAVSPAHVRGASSPRERQQQQHLSPHSNARKGVRVSGSPLRSPCSGRSSSDSRERNN 514
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BLAST of mRNA_Ecto-sp13_S_contig1638.4606.1 vs. uniprot
Match: A0A6H5LBL5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBL5_9PHAE)

HSP 1 Score: 617 bits (1591), Expect = 1.360e-204
Identity = 398/525 (75.81%), Postives = 407/525 (77.52%), Query Frame = 1 
Query:    1 MLSAVADAPSGGDRSDGCGGVAGERERRSFSASDAAAAAHDARDAGPETSRRKRVDAAPPAATAAAAPLLEPAGPSFPAGVEHEHAVPVATPTRRHRRHSFSGKDSPPHPIPSAEGVTSNSRDSREVASARPAAGCGGRGESVPSPSVSPAHTPVTPQRHPTDQRHQAAGHSSAGVSTPPSPAYFTGRLGDHASGVGVGGNTGGSPSRSGGACSPALGSQSXXXXXXXXXXXXXXXXXXGGYTSPARAPHVTTPSGPMGPAGVQPSLQPSPPXXXFDXXXXXXXXSLSAIGSSHGAGGXSGGPAVGDPGAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGPHCECWAWSASAGGYAAAA---VRSPSASYLATASNPYGSPGKEAAGSGGXXXXXXXXXXXXXGG-----AFLGSIWNTAVNTFRGVAGGHARRASWSAARGRGGQQHRASVLPPTAAVSPAHVRGASSPRERQQQQ---HLSPHSNVRKGGRVSGSPLGSPCGGRSNSDGRGSNN 1542
            MLSA ADAPSGG      GGVAGERERRS SASDAAAAAHDARDAGPET RRKRVDAAPP                FPAG EH+HAV VATPTRRH RHSFSGKDSP HP+P+AE V SNSRD REVASA PA G  GRGESVP P+VSPAHTP TPQRHPTDQRHQAAGHSSAGVSTPPSPAYFTGRLGDHASGVGVGGNTGGSP+RSGGACSPALGSQ  XXXXXXXXXXXXXXXX G     +R P                    SP    FD        SLSA GSSHGAG  SGGPAVGD GAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGPHCECWAWSAS           VRSPSASYLATASNPYG PGKEA     XXXXXXXXXXXXX       AFLGSIWNTAVNTFRGVAG H RRASWS ARGRGGQQHRASV PPTAAVSPAH+RGASSPRER+QQ    HLSPHSNVRKGGRVSGSPLGSPC GRS+ D RGSNN
Sbjct:  484 MLSAAADAPSGG------GGVAGERERRSLSASDAAAAAHDARDAGPETGRRKRVDAAPPXXXXXXXXXXX-----FPAGAEHDHAVRVATPTRRHHRHSFSGKDSPTHPVPAAERVMSNSRDYREVASAGPAEGHVGRGESVPGPNVSPAHTPATPQRHPTDQRHQAAGHSSAGVSTPPSPAYFTGRLGDHASGVGVGGNTGGSPNRSGGACSPALGSQPSXXXXXXXXXXXXXXXXRGCLLYTSRCP--------------------SPLPSSFDGGAQQQPPSLSATGSSHGAGSGSGGPAVGDLGAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGPHCECWAWSASXXXXXXXXXXXVRSPSASYLATASNPYGGPGKEAXXXXXXXXXXXXXXXXXXXXXXXXXAFLGSIWNTAVNTFRGVAGAHGRRASWSTARGRGGQQHRASVSPPTAAVSPAHMRGASSPRERRQQXXXXHLSPHSNVRKGGRVSGSPLGSPCSGRSSDDSRGSNN 977
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1638.4606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF6_ECTSI1.120e-22180.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5LBL5_9PHAE1.360e-20475.81Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1638contigEcto-sp13_S_contig1638:6678..8438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1542
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004260.1
Cds size1542
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.8522947-CDS-Ecto-sp13_S_contig1638:6677..73361681462861.8522947-CDS-Ecto-sp13_S_contig1638:6677..7336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1638 6678..7336 -
1681462861.863743-CDS-Ecto-sp13_S_contig1638:7555..84381681462861.863743-CDS-Ecto-sp13_S_contig1638:7555..8438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1638 7556..8438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1638.4606.1prot_Ecto-sp13_S_contig1638.4606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1638 6678..8438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1638.4606.1

>prot_Ecto-sp13_S_contig1638.4606.1 ID=prot_Ecto-sp13_S_contig1638.4606.1|Name=mRNA_Ecto-sp13_S_contig1638.4606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=514bp
MLSAVADAPSGGDRSDGCGGVAGERERRSFSASDAAAAAHDARDAGPETS
RRKRVDAAPPAATAAAAPLLEPAGPSFPAGVEHEHAVPVATPTRRHRRHS
FSGKDSPPHPIPSAEGVTSNSRDSREVASARPAAGCGGRGESVPSPSVSP
AHTPVTPQRHPTDQRHQAAGHSSAGVSTPPSPAYFTGRLGDHASGVGVGG
NTGGSPSRSGGACSPALGSQSSSSGGGASMRGGGGGGGAGGYTSPARAPH
VTTPSGPMGPAGVQPSLQPSPPPSSFDGGAQQQPPSLSAIGSSHGAGGGS
GGPAVGDPGAAPVLLKPSFRGSDSLLTIPEDSTGFVLVTRPSSVSCEHGP
HCECWAWSASAGGYAAAAVRSPSASYLATASNPYGSPGKEAAGSGGGSGG
GDRGGRRSGGGAFLGSIWNTAVNTFRGVAGGHARRASWSAARGRGGQQHR
ASVLPPTAAVSPAHVRGASSPRERQQQQHLSPHSNVRKGGRVSGSPLGSP
CGGRSNSDGRGSNN
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mRNA from alignment at Ecto-sp13_S_contig1638:6678..8438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1638.4606.1 ID=mRNA_Ecto-sp13_S_contig1638.4606.1|Name=mRNA_Ecto-sp13_S_contig1638.4606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1638:6678..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCGGCAGTGGCGGACGCCCCAAGCGGTGGTGACCGTAGCGATGG
TTGTGGTGGTGTTGCCGGCGAGCGGGAGCGCCGTAGCTTTAGTGCTAGTG
ATGCCGCTGCTGCGGCCCACGATGCTCGGGACGCCGGGCCGGAGACCAGC
AGGCGAAAACGCGTCGACGCCGCTCCGCCGGCCGCGACGGCGGCGGCGGC
GCCACTGCTTGAGCCTGCTGGCCCGTCGTTCCCTGCCGGGGTAGAGCACG
AGCACGCGGTTCCTGTCGCGACTCCCACTCGCCGTCACCGCAGGCACAGC
TTCTCCGGGAAGGACTCGCCCCCCCACCCGATCCCCTCGGCGGAGGGGGT
GACGAGTAATTCACGGGACTCCCGCGAGGTGGCGTCCGCCAGACCAGCAG
CAGGCTGTGGGGGCAGGGGGGAGTCCGTCCCCAGTCCGAGCGTTTCTCCG
GCCCACACTCCCGTCACCCCGCAGAGGCACCCGACAGATCAACGTCATCA
GGCTGCTGGGCACAGCAGTGCGGGCGTGTCTACGCCGCCGTCCCCGGCGT
ACTTCACCGGAAGGCTGGGTGACCACGCGTCGGGGGTCGGGGTCGGCGGG
AATACCGGCGGCAGCCCCAGCCGCAGCGGCGGCGCTTGCTCACCGGCACT
GGGCTCGCAGTCTTCCTCGTCCGGCGGCGGCGCGTCGATGCGCGGTGGCG
GGGGGGGCGGGGGGGCGGGGGGATATACGTCCCCGGCACGCGCGCCGCAC
GTCACTACTCCCTCCGGTCCTATGGGTCCTGCCGGCGTTCAGCCGTCCTT
GCAGCCGTCACCGCCACCCTCGTCATTCGATGGAGGCGCTCAACAGCAGC
CGCCGTCGTTATCGGCAATAGGGAGTTCACACGGTGAGGGTTATTTTTTG
AGCGGGGTGCTTCCCTTCCCCCGCCAACCAAAAGGCTAGTGCCGCAGGCA
TGATACCCAGGGCCGAGAGGCGAGATAAGTTAGTTTTAAATGTTTTCGAA
ATGACGTGTTAGCCCCCTTCCTATTCCGTAGCATATCGTTTGTTGACGCT
CCACACCTCCGTTACATCATGCTCCCCATCCCACCGGTTCGATTTTTCTC
AGGAGCAGGAGGTGGAAGCGGGGGCCCCGCGGTGGGGGACCCTGGCGCAG
CGCCGGTGCTCCTCAAGCCCAGCTTCCGGGGCAGCGACAGCCTCCTCACG
ATACCCGAAGACTCCACCGGCTTCGTCCTCGTCACGCGCCCTTCGTCCGT
TTCTTGCGAGCACGGGCCGCACTGCGAGTGCTGGGCCTGGTCTGCCAGTG
CCGGAGGCTACGCCGCCGCCGCCGTCAGGTCGCCGTCGGCCTCCTACCTC
GCGACGGCCAGCAACCCGTACGGGAGTCCCGGAAAAGAAGCTGCCGGTAG
CGGTGGCGGCAGCGGTGGCGGTGATCGCGGCGGACGGCGGTCTGGTGGCG
GCGCGTTTCTTGGGAGCATCTGGAACACCGCCGTCAACACCTTCCGCGGC
GTCGCTGGCGGCCACGCGAGGCGGGCCTCCTGGTCAGCCGCGCGCGGGAG
AGGCGGCCAGCAGCACAGGGCTAGCGTTTTGCCTCCGACAGCTGCGGTGT
CTCCGGCGCACGTCCGCGGGGCCTCTTCGCCTCGCGAGCGGCAGCAGCAG
CAGCACCTGTCACCGCACTCCAACGTTCGCAAGGGGGGGCGCGTGAGCGG
GAGTCCCCTTGGGAGCCCATGCGGCGGCAGGAGCAACAGCGATGGCAGGG
GCAGCAATAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1638:6678..8438-

>mRNA_Ecto-sp13_S_contig1638.4606.1 ID=mRNA_Ecto-sp13_S_contig1638.4606.1|Name=mRNA_Ecto-sp13_S_contig1638.4606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1638:6678..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCGGCAGTGGCGGACGCCCCAAGCGGTGGTGACCGTAGCGATGG
TTGTGGTGGTGTTGCCGGCGAGCGGGAGCGCCGTAGCTTTAGTGCTAGTG
ATGCCGCTGCTGCGGCCCACGATGCTCGGGACGCCGGGCCGGAGACCAGC
AGGCGAAAACGCGTCGACGCCGCTCCGCCGGCCGCGACGGCGGCGGCGGC
GCCACTGCTTGAGCCTGCTGGCCCGTCGTTCCCTGCCGGGGTAGAGCACG
AGCACGCGGTTCCTGTCGCGACTCCCACTCGCCGTCACCGCAGGCACAGC
TTCTCCGGGAAGGACTCGCCCCCCCACCCGATCCCCTCGGCGGAGGGGGT
GACGAGTAATTCACGGGACTCCCGCGAGGTGGCGTCCGCCAGACCAGCAG
CAGGCTGTGGGGGCAGGGGGGAGTCCGTCCCCAGTCCGAGCGTTTCTCCG
GCCCACACTCCCGTCACCCCGCAGAGGCACCCGACAGATCAACGTCATCA
GGCTGCTGGGCACAGCAGTGCGGGCGTGTCTACGCCGCCGTCCCCGGCGT
ACTTCACCGGAAGGCTGGGTGACCACGCGTCGGGGGTCGGGGTCGGCGGG
AATACCGGCGGCAGCCCCAGCCGCAGCGGCGGCGCTTGCTCACCGGCACT
GGGCTCGCAGTCTTCCTCGTCCGGCGGCGGCGCGTCGATGCGCGGTGGCG
GGGGGGGCGGGGGGGCGGGGGGATATACGTCCCCGGCACGCGCGCCGCAC
GTCACTACTCCCTCCGGTCCTATGGGTCCTGCCGGCGTTCAGCCGTCCTT
GCAGCCGTCACCGCCACCCTCGTCATTCGATGGAGGCGCTCAACAGCAGC
CGCCGTCGTTATCGGCAATAGGGAGTTCACACGGAGCAGGAGGTGGAAGC
GGGGGCCCCGCGGTGGGGGACCCTGGCGCAGCGCCGGTGCTCCTCAAGCC
CAGCTTCCGGGGCAGCGACAGCCTCCTCACGATACCCGAAGACTCCACCG
GCTTCGTCCTCGTCACGCGCCCTTCGTCCGTTTCTTGCGAGCACGGGCCG
CACTGCGAGTGCTGGGCCTGGTCTGCCAGTGCCGGAGGCTACGCCGCCGC
CGCCGTCAGGTCGCCGTCGGCCTCCTACCTCGCGACGGCCAGCAACCCGT
ACGGGAGTCCCGGAAAAGAAGCTGCCGGTAGCGGTGGCGGCAGCGGTGGC
GGTGATCGCGGCGGACGGCGGTCTGGTGGCGGCGCGTTTCTTGGGAGCAT
CTGGAACACCGCCGTCAACACCTTCCGCGGCGTCGCTGGCGGCCACGCGA
GGCGGGCCTCCTGGTCAGCCGCGCGCGGGAGAGGCGGCCAGCAGCACAGG
GCTAGCGTTTTGCCTCCGACAGCTGCGGTGTCTCCGGCGCACGTCCGCGG
GGCCTCTTCGCCTCGCGAGCGGCAGCAGCAGCAGCACCTGTCACCGCACT
CCAACGTTCGCAAGGGGGGGCGCGTGAGCGGGAGTCCCCTTGGGAGCCCA
TGCGGCGGCAGGAGCAACAGCGATGGCAGGGGCAGCAATAAC
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