mRNA_Ecto-sp13_S_contig1638.4605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1638.4605.1
Unique NamemRNA_Ecto-sp13_S_contig1638.4605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1638.4605.1 vs. uniprot
Match: A0A6H5LBL5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBL5_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.550e-88
Identity = 178/209 (85.17%), Postives = 180/209 (86.12%), Query Frame = -1 
Query:   63 QVLQRAEHCRAQAACAXXXXXXXXXXXXXXXXXXXXXSPCFPVPDGFNNPSSSEDSGVDGHVFGGMGKTGXXXXXXXXVPCGGSSGNPAVTAVYRSATEHGQEAAVCYMLGRSDAAITHYVRACALLQLLALEPEMAGAGAVDDGRWRHHAXXXXXXXXXXEDRSQPQPQSRCDGWQAHLLGMADAYAQRVELISRGEGSAGSSTTERV 689
            QVLQRAEHCRAQAACAXXXXXXXXXXXXXXXXXXX  SPC PVPDG NN SSSEDSGVDGHVFGGMGKTG        VPCGGS+GNPAV AVYRSATEHGQEAAVCYMLGRSDAA+THYVRACALLQLLALEPEMAGAGAVDDGRWRH            EDRSQPQ Q RCDGWQAHLLGMAD YAQRVELISRGEGSAGSSTTERV
Sbjct: 1243 QVLQRAEHCRAQAACAXXXXXXXXXXXXXXXXXXXS-SPCCPVPDGLNNRSSSEDSGVDGHVFGGMGKTGGGGG----VPCGGSNGNPAVAAVYRSATEHGQEAAVCYMLGRSDAAVTHYVRACALLQLLALEPEMAGAGAVDDGRWRHDGAAAAAAAGV-EDRSQPQRQGRCDGWQAHLLGMADTYAQRVELISRGEGSAGSSTTERV 1445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1638.4605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBL5_9PHAE1.550e-8885.17Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1638contigEcto-sp13_S_contig1638:5155..5843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size689
Hectar predicted targeting categorysignal peptide
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.68201-UTR-Ecto-sp13_S_contig1638:5154..53061681462861.68201-UTR-Ecto-sp13_S_contig1638:5154..5306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1638 5155..5306 +
1681462861.7116055-UTR-Ecto-sp13_S_contig1638:5738..58431681462861.7116055-UTR-Ecto-sp13_S_contig1638:5738..5843Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1638 5739..5843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.7010112-CDS-Ecto-sp13_S_contig1638:5306..57381681462861.7010112-CDS-Ecto-sp13_S_contig1638:5306..5738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1638 5307..5738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1638.4605.1prot_Ecto-sp13_S_contig1638.4605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1638 5307..5738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1638.4605.1

>prot_Ecto-sp13_S_contig1638.4605.1 ID=prot_Ecto-sp13_S_contig1638.4605.1|Name=mRNA_Ecto-sp13_S_contig1638.4605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MSLPAVAPALWLGLRPVLTAGGGGGGSGGMMAPAAVVNGASAGHLWLERQ
ELQQRARTNIVRDSGVRPPEHVAHRRLLTVLGGRPVNGGHRGISATTAAR
DAAAAAAAAAGLSHASENVAVDAAVFRRARVVEAIWHGETRRR*
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mRNA from alignment at Ecto-sp13_S_contig1638:5155..5843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1638.4605.1 ID=mRNA_Ecto-sp13_S_contig1638.4605.1|Name=mRNA_Ecto-sp13_S_contig1638.4605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1638:5155..5843+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCATTCCATCAACTAACAACCCTGTCCTTTTCTCAAAATACAATCA
ACAAGTTCATTACACACGCTCCGTCGTGCTGCTGCCAGCGCTACCTTCGC
CTCTACTGATGAGCTCTACCCGCTGGGCGTAAGCGTCCGCCATGCCCAGC
AGATGAGCCTGCCAGCCGTCGCACCGGCTCTGTGGCTGGGGTTGAGACCT
GTCCTCACCGCCGGCGGCGGCGGCGGCGGCAGCGGCGGCATGATGGCGCC
AGCGGCCGTCGTCAACGGCGCCAGCGCCGGCCATCTCTGGCTCGAGCGCC
AGGAGCTGCAGCAACGCGCACGCACGAACATAGTGCGTGATAGCGGCGTC
CGACCTCCCGAGCATGTAGCACACCGCCGCCTCCTGACCGTGCTCGGTGG
CCGACCGGTAAACGGCGGTCACCGCGGGATTTCCGCTACTACCGCCGCAC
GGGACGCCGCCGCCGCCGCCGCCGCCGCCGCCGGTCTTTCCCATGCCTCC
GAAAACGTGGCCGTCGACGCCGCTGTCTTCCGAAGAGCTCGGGTTGTTGA
AGCCATCTGGCACGGGGAAACAAGGCGACGATGATGAGGACGAAGACGAA
GAAGAATTAGGAGTCGGCAGCGCAGCAGCCGCTGTAGTGGCAGCGCAGGC
GGCCTGCGCCCGGCAGTGCTCCGCGCGTTGCAGCACCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1638:5155..5843+

>mRNA_Ecto-sp13_S_contig1638.4605.1 ID=mRNA_Ecto-sp13_S_contig1638.4605.1|Name=mRNA_Ecto-sp13_S_contig1638.4605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1638:5155..5843+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCTGCCAGCCGTCGCACCGGCTCTGTGGCTGGGGTTGAGACCTGT
CCTCACCGCCGGCGGCGGCGGCGGCGGCAGCGGCGGCATGATGGCGCCAG
CGGCCGTCGTCAACGGCGCCAGCGCCGGCCATCTCTGGCTCGAGCGCCAG
GAGCTGCAGCAACGCGCACGCACGAACATAGTGCGTGATAGCGGCGTCCG
ACCTCCCGAGCATGTAGCACACCGCCGCCTCCTGACCGTGCTCGGTGGCC
GACCGGTAAACGGCGGTCACCGCGGGATTTCCGCTACTACCGCCGCACGG
GACGCCGCCGCCGCCGCCGCCGCCGCCGCCGGTCTTTCCCATGCCTCCGA
AAACGTGGCCGTCGACGCCGCTGTCTTCCGAAGAGCTCGGGTTGTTGAAG
CCATCTGGCACGGGGAAACAAGGCGACGATGA
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