mRNA_Ecto-sp13_S_contig16307.4570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: D8LGR4_ECTSI (Domain repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR4_ECTSI) HSP 1 Score: 564 bits (1453), Expect = 1.480e-196 Identity = 367/395 (92.91%), Postives = 370/395 (93.67%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALARTVVSTAAXXXXXXXXXXXXXXXTLTPVVAATSQPATSQPVSTPSPTLAAALPTPSPVAPPXPAXVVPVTAXXTPSPTAAIAVEAEEDTDRGGIAGAIDEMDTTVVVAVAAPVGAMLLLGCLVCAAKRKKR 1185
GNVRCWGDAEYGALG GDETTTGNGD TIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLP VPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSE ILTVGDDPDEMGDALPT+DLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGD+LPAVNLGTNRTAVALARTVVSTA XXXXXXXXXXXXXXX VVAATSQP VSTPSPTLAAALPTPSPVAP X X VT XXT SPTAAIAVEAEEDTDRGG+AGAID MD TVVVAVAAPVG MLLLGCLVCAAKRKKR
Sbjct: 162 GNVRCWGDAEYGALGGGDETTTGNGDGTIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPTVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEAILTVGDDPDEMGDALPTVDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDSLPAVNLGTNRTAVALARTVVSTAXXXXXXXXXXXXXXXXXXXXVVAATSQP-----VSTPSPTLAAALPTPSPVAPXXXXXXXXVTTXXTXSPTAAIAVEAEEDTDRGGVAGAIDGMDKTVVVAVAAPVGVMLLLGCLVCAAKRKKR 551
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A0K1EC39_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EC39_CHOCO) HSP 1 Score: 190 bits (483), Expect = 3.050e-52 Identity = 101/199 (50.75%), Postives = 128/199 (64.32%), Query Frame = 1
Query: 7 VRCWGDAEYGALGAGDETTTGNGDSTIAD---SVDLGVNGTNTVGAIGGGP-CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRA 591
++CWGD YG LG GD T GN T+ D +VDLGV+G T +G CA+ G++KCWG +GQ G G AD GD PGEMG++LP V LG G LV +++ GR + CA+L+DG +KCWG E GQLG D GD P EMGDALP +DLGS + AV ++ HTCALL G +KCWG +++G LGL D A
Sbjct: 204 LKCWGDNGYGQLGLGDVTPRGNLPGTMGDDLPAVDLGVDGAGTAVFMGAAHVCALLTRGAVKCWGANGHGQLGLGDADHRGDAPGEMGDALPDVDLGAGNLVAALALGRMHSCALLKDGSVKCWGDNERGQLGLGDTELRGDAPGEMGDALPRVDLGSGKRAVAITAGDLHTCALLDDGSLKCWGDSYWGQLGLGDREA 402
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN) HSP 1 Score: 189 bits (480), Expect = 2.040e-50 Identity = 108/266 (40.60%), Postives = 138/266 (51.88%), Query Frame = 1
Query: 7 VRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNT-VGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
+RCWG G LG G T+ G+ + D+ +DLG T V CA+ DGSLKCWG F G GQG ++LGD+P EMG++LP + LG G + GG + CA+L +G +KCWG GQLG +GD+P EMGD LP+IDLG+ TAV ++ S HTCA+L G +KCWG LGL D + RG G+MGDNLPAVNLGT RTAVA++
Sbjct: 61 LRCWGQGTNGQLGQGSTTSIGDNPGEMGDNLPAIDLGTGHTAARVATTYSRTCAILDDGSLKCWGNNFGGSLGQGNTNNLGDQPNEMGDNLPSIDLGTGRTAVMVVGGLSHVCALLDNGTVKCWGHNTAGQLGQGHTNDIGDNPGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLKCWGANTSAQLGLGD----------------------------------------AQNRGDQPGEMGDNLPAVNLGTGRTAVAVS 286
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A4U1JAV6_9DELT (Uncharacterized protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JAV6_9DELT) HSP 1 Score: 187 bits (474), Expect = 4.230e-50 Identity = 113/268 (42.16%), Postives = 139/268 (51.87%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGGP-CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
G V+CWG+ G LG G + G+ + D+ VDLG T A G CA+ DG +KCWG G YG G G GDEPGEMG++LP V LG G +V +ISGG+ + CA+L DG +KCWG GQLG+ D T GDDP EMGDALP IDLG+ A+ ++ HTCALL G VKCWG G+ G D S RG G+MGD LPAV+LG TA+A+A
Sbjct: 244 GRVKCWGNNSNGVLGLGHSKSVGDEPGDMGDALPFVDLGTGATAVSIAAGVSHICALLADGRVKCWGYGTYGALGLGDMKDRGDEPGEMGDALPAVDLGAGAVVRAISGGQYHSCALLADGRVKCWGHGFSGQLGTGDKETRGDDPGEMGDALPAIDLGTGAKALAIAAWGQHTCALLHEGRVKCWGNGINGSTGQGD----------------------------------------SLSRGDEPGEMGDVLPAVDLGVGVTAIAIA 471
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN) HSP 1 Score: 186 bits (472), Expect = 3.200e-49 Identity = 110/268 (41.04%), Postives = 138/268 (51.49%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIAD---SVDLGVNGTNTVGAIGGG-PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
G V+CWG+ G LG G T G+ + D +VDLG T T A G CA+ DG++KCWG GQ GQG D +GD PGEMG++LP V LG G +IS G + CA+L DG +KCWG G+LG D+ GD EMGD LP ++LG+ TA VS ++HTCALL G VKCWG F G LG D G + G+MGDNLP V+LG+ RTA+A+A
Sbjct: 128 GTVKCWGNGGSGRLGQGSTDTIGDSTAERGDGLPTVDLGTGRTATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGGGFNGQLGTGDVTG----------------------------------------LGDNPGEMGDNLPPVDLGSGRTAIAIA 355
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE) HSP 1 Score: 177 bits (450), Expect = 3.640e-49 Identity = 109/268 (40.67%), Postives = 137/268 (51.12%), Query Frame = 1
Query: 7 VRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGG---PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
V+CWG A G LG GD G+ + D+ VDLG T V + GG CAV +G KCWG Q G G ++ GD PGEMG+SLP V LG G +++GG + CAVL +G KCWG + GQLG D GD+P EMGD+LP +DLG+ TAV ++ + H+CA+L + KCWG +FG LG D RG G+MGDNLP V+LGT RTAVALA
Sbjct: 50 VKCWGRAANGQLGYGDTNNRGDNPGEMGDNLPFVDLGTGRTAVV--LAGGHYHTCAVLDNGRAKCWGWNNAAQLGYGDTNNRGDNPGEMGDSLPFVDLGTGRTAVAMAGGELHTCAVLDNGRAKCWGVSSLGQLGYGDTSIRGDNPGEMGDSLPYVDLGTGRTAVVITAGTYHSCAVLDNARAKCWGPYYFGQLGYGDLNT----------------------------------------RGDGPGEMGDNLPYVDLGTGRTAVALA 275
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO) HSP 1 Score: 180 bits (456), Expect = 2.400e-48 Identity = 107/267 (40.07%), Postives = 137/267 (51.31%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGG-GPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVAL 789
G+V+CWG YG LG GD + G+G + D+ + LG T ++GG CA+ +GS+KCWG YGQ G G S GD PGEMG++LP + LG G ++IS G + CA+L +G +KCWG GQLG D D P EMGD LP + LG+ TA +S HTCALL +G VKCWG G LGL D + RG G+MGD LPA+ LGT RTA+A+
Sbjct: 181 GSVKCWGYNAYGQLGLGDTSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTAKAISAGGYHTCALLDNGSVKCWGANGNGQLGLGDTSYRSDGPGEMGDTLPAVVLGTGRTATAISAGYYHTCALLDNGYVKCWGYNSDGQLGLGD----------------------------------------TSYRGNGPGEMGDTLPAITLGTGRTAMAI 407
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A0K1ECX1_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ECX1_CHOCO) HSP 1 Score: 176 bits (446), Expect = 4.890e-47 Identity = 109/276 (39.49%), Postives = 133/276 (48.19%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVG-AIGGGP---CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALARTVVSTAA 816
G V+CWGD G LG GD T G G + + GT + A+ G CA+ GS+KCWG YGQ G G + G++PGEMG++LP V LG G +I G + CA+L DGG+KCWG + GQLG D+ GDD EMGD LP +D HTCALLG GGVKCWG G LGL D A RG AG+MGD+LPAV+LG + AVA+A T A
Sbjct: 63 GRVKCWGDNWVGQLGIGDTRTRGEGPGQMGTRLPAAELGTGSAAVAVAAGAWHSCALLHGGSVKCWGFNEYGQLGVGDYRNRGNDPGEMGDALPAVDLGAGKTATAIVAGAWHSCALLHDGGVKCWGDNQSGQLGLGDVEARGDDAGEMGDGLPAVDXXXXXXXXXXXXXXXHTCALLGDGGVKCWGDNRSGRLGLGDVEA----------------------------------------RGDDAGEMGDSLPAVDLGAGQAAVAIAAGEAHTCA 298
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: L7UHS0_MYXSD (RCC1 repeat-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) TaxID=1278073 RepID=L7UHS0_MYXSD) HSP 1 Score: 173 bits (439), Expect = 6.980e-47 Identity = 106/268 (39.55%), Postives = 136/268 (50.75%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIG-GGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
G V+CWG G LG GD G G + D+ VDLGV A G CA+ +DG++KCWG GQ G G + GD G MG++LP V LG ++I+ GR + CA+L DG +KCWG E GQLG D + G +PDEMGDALP + LG TA ++ + HTCA+L G VKCWG +G LGL D RG + G+MGD LP+V+LGT RTA A++
Sbjct: 33 GVVKCWGRNTEGQLGLGDTVNRGAGPREMDDALAFVDLGVGRVAKALATGYEHACAILEDGAVKCWGYNMNGQLGLGVRSNHGDSQGSMGDALPTVNLGTKRTAKAITAGRAHSCAILDDGAVKCWGGNEYGQLGLGDKASRGVEPDEMGDALPEVKLGVGRTATAIAAGNLHTCAILDDGAVKCWGDNGYGRLGLGD----------------------------------------KSGRGDAPGEMGDALPSVDLGTGRTAKAIS 260
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A840I6P4_9ACTN (Alpha-tubulin suppressor-like RCC1 family protein/outer membrane protein OmpA-like peptidoglycan-associated protein n=1 Tax=Conexibacter arvalis TaxID=912552 RepID=A0A840I6P4_9ACTN) HSP 1 Score: 181 bits (460), Expect = 1.230e-46 Identity = 109/268 (40.67%), Postives = 137/268 (51.12%), Query Frame = 1
Query: 1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGG-PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
G V+CWG G LG GD G+ + D+ VDLG T T A G CA+ DGS+KCWG GQ GQG + G +PGE+G++LP V LG G +I+ G + CA+L DG +KCWG GQLG D GD P E+GDALP +DLGS TAV VS H+CALL G ++CWG G LGL D ++PRG G++GD LP V+LG+ RTA A+A
Sbjct: 537 GTVKCWGANNGGRLGLGDTAARGDAPGEMGDALPPVDLGSGRTATAIAAGSSHACALLDDGSVKCWGANASGQLGQGDRAARGGQPGELGDALPPVDLGSGATATAIATGSHHSCALLADGTVKCWGDNGSGQLGLGDTEPRGDQPGELGDALPPVDLGSRRTAVAVSAGRDHSCALLDDGTIRCWGGNSDGQLGLGD----------------------------------------TEPRGDQPGELGDALPPVDLGSRRTATAIA 764 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16307.4570.1 >prot_Ecto-sp13_S_contig16307.4570.1 ID=prot_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=395bp GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVGAIGGGPback to top mRNA from alignment at Ecto-sp13_S_contig16307:1..3828- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16307.4570.1 ID=mRNA_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16307:1..3828- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16307:1..3828- >mRNA_Ecto-sp13_S_contig16307.4570.1 ID=mRNA_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16307:1..3828- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |