mRNA_Ecto-sp13_S_contig16274.4546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16274.4546.1
Unique NamemRNA_Ecto-sp13_S_contig16274.4546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16274.4546.1 vs. uniprot
Match: D8LTT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT4_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.560e-99
Identity = 164/183 (89.62%), Postives = 173/183 (94.54%), Query Frame = 1 
Query:    1 MAAEQAVAAAERETPPQQADVAGGMTNRLMTAELTLADTEACLLEVQGELSSERENNDTLKERAEALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHARTKDEKRWSSRMAGLESELEQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLP 549
            MAAEQAVAAA R+TPPQQAD  GGMT++LMTAELTLADTEACL+EVQGEL SERENND LKE+A+ALEEAL+TCKKGREEAVQQVSKQGEV+I ALKARLR AEHAR KDEKRWSSR+AGLESE EQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYS P
Sbjct:    1 MAAEQAVAAAARKTPPQQADQPGGMTSKLMTAELTLADTEACLVEVQGELLSERENNDRLKEKAKALEEALKTCKKGREEAVQQVSKQGEVKITALKARLRLAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSPP 183
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BLAST of mRNA_Ecto-sp13_S_contig16274.4546.1 vs. uniprot
Match: A0A6H5KF01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF01_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 7.810e-94
Identity = 161/183 (87.98%), Postives = 168/183 (91.80%), Query Frame = 1 
Query:    1 MAAEQAVAAAERETPPQQADVAGGMTNRLMTAELTLADTEACLLEVQGELSSERENNDTLKERAEALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHARTKDEKRWSSRMAGLESELEQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLP 549
            MAAEQAVAA   +TP QQ   AGGM +RLMTAEL L DTEACL+EVQGELSSERENND LKE+A ALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHAR KDEKRWS+R+AGLESE EQASCLAEGLEKILV+EKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPN YAYSLP
Sbjct:  197 MAAEQAVAATAGKTPQQQPHEAGGMASRLMTAELALLDTEACLVEVQGELSSERENNDKLKEKANALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHARAKDEKRWSTRVAGLESEREQASCLAEGLEKILVQEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNPYAYSLP 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16274.4546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT4_ECTSI1.560e-9989.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF01_9PHAE7.810e-9487.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16274contigEcto-sp13_S_contig16274:379..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002890.1
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.0931275-CDS-Ecto-sp13_S_contig16274:378..9331681462857.0931275-CDS-Ecto-sp13_S_contig16274:378..933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16274 379..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16274.4546.1prot_Ecto-sp13_S_contig16274.4546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16274 379..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16274.4546.1

>prot_Ecto-sp13_S_contig16274.4546.1 ID=prot_Ecto-sp13_S_contig16274.4546.1|Name=mRNA_Ecto-sp13_S_contig16274.4546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MAAEQAVAAAERETPPQQADVAGGMTNRLMTAELTLADTEACLLEVQGEL
SSERENNDTLKERAEALEEALETCKKGREEAVQQVSKQGEVEIAALKARL
RQAEHARTKDEKRWSSRMAGLESELEQASCLAEGLEKILVKEKSAASRKE
ARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLPV*
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mRNA from alignment at Ecto-sp13_S_contig16274:379..933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16274.4546.1 ID=mRNA_Ecto-sp13_S_contig16274.4546.1|Name=mRNA_Ecto-sp13_S_contig16274.4546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16274:379..933+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGAGAGGGAGACCCCGCCGCA
GCAGGCTGACGTCGCAGGGGGCATGACGAACAGGCTGATGACAGCGGAGT
TAACCCTGGCCGATACGGAGGCGTGCCTGCTAGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGAGAACAACGACACGCTAAAGGAGAGGGCTGAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAAGGGGCGAGAAGAAGCTGTCCAGC
AGGTGTCCAAGCAAGGGGAGGTCGAGATCGCCGCGCTCAAAGCACGCCTG
CGTCAAGCAGAGCACGCCCGAACAAAGGACGAGAAACGGTGGTCGAGCAG
GATGGCAGGCCTCGAGAGCGAGCTGGAACAAGCCAGCTGTCTTGCCGAGG
GGCTCGAGAAGATCTTGGTGAAGGAAAAATCCGCCGCGTCTCGAAAAGAG
GCGAGGCTTAGGACTTTGTTCAGGAGGCTTGATTTTCTGGACTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACAGTCTCCCAG
TGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16274:379..933+

>mRNA_Ecto-sp13_S_contig16274.4546.1 ID=mRNA_Ecto-sp13_S_contig16274.4546.1|Name=mRNA_Ecto-sp13_S_contig16274.4546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16274:379..933+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGAGAGGGAGACCCCGCCGCA
GCAGGCTGACGTCGCAGGGGGCATGACGAACAGGCTGATGACAGCGGAGT
TAACCCTGGCCGATACGGAGGCGTGCCTGCTAGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGAGAACAACGACACGCTAAAGGAGAGGGCTGAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAAGGGGCGAGAAGAAGCTGTCCAGC
AGGTGTCCAAGCAAGGGGAGGTCGAGATCGCCGCGCTCAAAGCACGCCTG
CGTCAAGCAGAGCACGCCCGAACAAAGGACGAGAAACGGTGGTCGAGCAG
GATGGCAGGCCTCGAGAGCGAGCTGGAACAAGCCAGCTGTCTTGCCGAGG
GGCTCGAGAAGATCTTGGTGAAGGAAAAATCCGCCGCGTCTCGAAAAGAG
GCGAGGCTTAGGACTTTGTTCAGGAGGCTTGATTTTCTGGACTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACAGTCTCCCAG
TGTAG
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