mRNA_Ecto-sp13_S_contig16246.4532.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16246.4532.1
Unique NamemRNA_Ecto-sp13_S_contig16246.4532.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16246.4532.1 vs. uniprot
Match: D7G6H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H1_ECTSI)

HSP 1 Score: 528 bits (1359), Expect = 8.910e-183
Identity = 358/416 (86.06%), Postives = 373/416 (89.66%), Query Frame = 1 
Query:    1 SDLHPLSAAGYLILSVEALVITFSWPRLYPPAGRKRSESSARHRQQRRRSRQLSSSGSADLFGGATPSPTINGQRFNTNGGKASSRWSGGSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFVGEDSLETFPEKRSAVDGDVRVPLPPKSRMRYARPVLLVLLTLSASYLTTWLLLSISSARVSTAVDEDAISNTRDIEAMKKGAEMERSMREEREEGARXMXLXEKAVREAVAAKEXXXRQRXXXXXXXXXXXXXXXXKDKRLEEARXXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLRXXXXXXXXXXXXAAVTKAKLEAEQTKKR--AKMAATLDQRRSIGLEDSLTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKVRRQHA 1242
            SDLHPL AAGYLILSVEAL +TF WPRLYPPAGRKRSESSARHR+Q RRSR LS SGSADLFGGATPSPTINGQR NTNGGKASSRWSG SSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGF+GE+ LETFPEKRSAVDGD+RVPLPPKSRMRYARPVL+VLLTLSASYLTTWLLLSISSARVSTAVDEDA+S+TRDI AMKKGAEMER  REEREEGAR M L EKA+REAVAAKE XX   XXXXXXXXXXXXXX  ++KRLEEAR XXXXXXXXXXXXXXXXXXXXXXXXXXQAARLR XXXXXXXXXXX                  AKMAATL+Q RSIGLED+L+NGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRK+RRQ A
Sbjct:   14 SDLHPLRAAGYLILSVEALTVTFWWPRLYPPAGRKRSESSARHRRQHRRSRHLSRSGSADLFGGATPSPTINGQRSNTNGGKASSRWSGDSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFLGEEPLETFPEKRSAVDGDMRVPLPPKSRMRYARPVLIVLLTLSASYLTTWLLLSISSARVSTAVDEDAMSSTRDIVAMKKGAEMERRTREEREEGARRMELEEKALREAVAAKEAXXXXXXXXXXXXXXXXXXXDAEEKRLEEARAXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKMAATLEQTRSIGLEDALSNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQA 429
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BLAST of mRNA_Ecto-sp13_S_contig16246.4532.1 vs. uniprot
Match: A0A6H5L6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N1_9PHAE)

HSP 1 Score: 477 bits (1228), Expect = 1.030e-162
Identity = 332/431 (77.03%), Postives = 344/431 (79.81%), Query Frame = 1 
Query:    1 SDLHPLSAAGYLILSVEALVITFSWPRLYPPAGRKRSESSARHRQQRRRSRQLSSSGSADLFGGATPSPTINGQRFNTNGGKASSRWSGGSSGWWESEGGLEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFVGEDSLETFPEKRSAVDGDVRVPLPPKSRMRYARPVLLVLLTLSASYLTTWLLLSISSARVSTAVDEDAISNTRDIEAMKKGAEMERSMREEREEGARXMXLXEKAVREAVAAKEXXXRQRXXXXXXXXXXXXXXXXKDKRLEEARXXXXXXXXXXXXXXXXXXXXXXXXXXXQAARLRXXXXXXXXXXXXAAVTKAKLEAEQTKKRAKMAATLDQRRSIGLEDSLTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKVRRQHAVRPCTACRLTVAPEGRV 1293
            SDLHPLSAAGYLILSVEALV+TF WPRLYPPAGRKRSESS         SR L SSGS   FGGATPSPTINGQRFNTNGGKASSRWSG SSGWWES+GGLEGLSEAGRSSAPSSLVSIGGR                F GE+ LETFPEKRSAVDGDVRVPLP KSRMRYARPVLLVLLTLSASYLTTWLLLSIS AR+STAVDE A+SNTRDIEAMKK AE+ER +REEREE A  M L EKA++EAVAA  XXX   XXXXXXXXXXXXXXXX         XXXXXXX           XXXXXXXXXQAARLRXXXXXXXXXXXX                 KMAATL+QRRSIGLED+LTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRK+RRQ AVRPCTACRLTVAPEGRV
Sbjct:   14 SDLHPLSAAGYLILSVEALVVTFWWPRLYPPAGRKRSESSXXXXXXXXXSRHLGSSGSTVFFGGATPSPTINGQRFNTNGGKASSRWSGDSSGWWESDGGLEGLSEAGRSSAPSSLVSIGGRXXXXXXXXXXXXXXXXFFGEEPLETFPEKRSAVDGDVRVPLPSKSRMRYARPVLLVLLTLSASYLTTWLLLSISLARISTAVDEGAMSNTRDIEAMKKAAEVERRVREEREEAANRMELEEKALQEAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXRERRAREEQKAXXXXXXXXXQAARLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMAATLEQRRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRV 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16246.4532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6H1_ECTSI8.910e-18386.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6N1_9PHAE1.030e-16277.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16246contigEcto-sp13_S_contig16246:72..3459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1308
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-05_006180.1
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.8205442-CDS-Ecto-sp13_S_contig16246:71..4451681462855.8205442-CDS-Ecto-sp13_S_contig16246:71..445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16246 72..445 +
1681462855.8307362-CDS-Ecto-sp13_S_contig16246:763..8811681462855.8307362-CDS-Ecto-sp13_S_contig16246:763..881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16246 764..881 +
1681462855.8394566-CDS-Ecto-sp13_S_contig16246:1572..21091681462855.8394566-CDS-Ecto-sp13_S_contig16246:1572..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16246 1573..2109 +
1681462855.8483884-CDS-Ecto-sp13_S_contig16246:2393..25281681462855.8483884-CDS-Ecto-sp13_S_contig16246:2393..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16246 2394..2528 +
1681462855.8590364-CDS-Ecto-sp13_S_contig16246:3315..34591681462855.8590364-CDS-Ecto-sp13_S_contig16246:3315..3459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16246 3316..3459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16246.4532.1prot_Ecto-sp13_S_contig16246.4532.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16246 72..3459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16246.4532.1

>prot_Ecto-sp13_S_contig16246.4532.1 ID=prot_Ecto-sp13_S_contig16246.4532.1|Name=mRNA_Ecto-sp13_S_contig16246.4532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp
SDLHPLSAAGYLILSVEALVITFSWPRLYPPAGRKRSESSARHRQQRRRS
RQLSSSGSADLFGGATPSPTINGQRFNTNGGKASSRWSGGSSGWWESEGG
LEGLSEAGRSSAPSSLVSIGGRRRRAARLQSGQSGGGGFVGEDSLETFPE
KRSAVDGDVRVPLPPKSRMRYARPVLLVLLTLSASYLTTWLLLSISSARV
STAVDEDAISNTRDIEAMKKGAEMERSMREEREEGARRMELEEKAVREAV
AAKEARQRQREAERRKDLERKALADAKDKRLEEARALREKQQREQRAREE
QRGRDEKRAKDEQAARLREQKASEERKARDAAVTKAKLEAEQTKKRAKMA
ATLDQRRSIGLEDSLTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRS
LVGWIWRKVRRQHAVRPCTACRLTVAPEGRVVRCI*
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mRNA from alignment at Ecto-sp13_S_contig16246:72..3459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16246.4532.1 ID=mRNA_Ecto-sp13_S_contig16246.4532.1|Name=mRNA_Ecto-sp13_S_contig16246.4532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16246:72..3459+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGACCTCCACCCGCTGAGTGCGGCGGGGTACCTTATTCTCTCCGTCGA
GGCCCTGGTAATCACCTTCTCGTGGCCGCGTCTATACCCCCCGGCGGGTC
GGAAACGGAGTGAGAGCAGCGCACGACACCGTCAGCAGCGCCGTCGGAGT
CGGCAGCTTAGCAGCAGCGGCAGCGCCGATCTATTCGGGGGTGCTACTCC
GTCCCCCACCATCAACGGGCAGAGGTTCAATACTAACGGTGGCAAGGCGT
CGTCGCGCTGGAGCGGAGGCAGTAGCGGATGGTGGGAGAGCGAGGGTGGG
CTAGAGGGCTTGAGCGAGGCAGGCAGGAGCAGTGCGCCGTCTTCTCTTGT
GTCCATCGGTGGCAGAAGAAGAAGGTGAACGAGTGGGTTGGTTCGGCCAC
TGGACTTGGTTGCTTTGGATTTGCTTCGTGGATGTATGTGGTGTGGCATG
CGGTTTGTCCATTTTTGGTCATGGCTTTACGGACTGCGGAAGGCTGAACT
GTGATAGATCAAGTCGTTCAATGTTTTTGGGAAAGGGGGGAGGATCGGTC
AACTTCATGCTGTATGCGTATGTTCGGCCACTCAATGTCGTTGTGGGTAC
ATCATGCCCAGCTCCCTGCTGTACACAGCAGCACATGCGATCATTCTTCT
TGCGTTCACCGCAACGCGCGAACTGTTTGTGCTTATCTGCAGAGCAGCAC
GCTTACAGTCAGGTCAATCCGGCGGCGGTGGCTTTGTAGGCGAGGATTCC
TTGGAAACGTTTCCTGAGAAGCGGTCCGCCGTTGACGGGGATGTGCGAGT
CCCGCTCCCGGTGAGTCCGGACACAACATATGAACAAGGAGGCCAAGGTT
CCGCCGCTGCTCCTTGTGTTCTGGTGTGCCGTTCGGTGAGGTCCTCATAC
GTTCCGTGAAGACCTTGGTGCAGCGCTCTGCAGGGTTGAAATGTTTTTGT
ACATGTACGGGAATCCCACATTCGTGTAAATTCTTCGGTCTGCTGTGATA
AACATGGCATGTCGAATGCAGTATCCCATACACCGGCAAGCTTGGCGTGT
CCAAAAATTTCTGTGCTTGCCGACTTGTGTGCGTTCGCTGTTTTTGTCGT
GGCTGGTGTGCCTTGCTGGAGTTTCATCTTAGGTCGGTCTTCGCCGACGG
TTCGCGGCCACTATTGTAGCACGCAGAGGTTGCGCAAGAAATGTCTCGCT
TATTGAAACAAGCTGGGTCGTTATTGAAGGAAAAGCAGCAATCCTCGGGC
TCGCAACAAGTGCCTGCAGAGGGAGCACGAGCACAATTACGCCTAAATAG
AGACAATGCAAAGGTAGTTCAGGGAGGAACACTACCACGCCAAGCCGATT
CGATCCTTCACCCATCTGGGCCCTTGGAATCAATATCCTTGAAACTGGGT
CTTGGCATGCGCCCTTGAAAGGACGACTGTAATCTCCCGACGCCCTCCTC
CTCTGCCGCGCACCCCCGCTTTGAATTCCATGGACCAACTTCGGCCACAA
GCCAAAATCACGGATGCGATACGCCCGACCGGTCCTTCTAGTGCTGCTCA
CGCTCTCGGCGAGCTACCTCACCACGTGGCTGCTCCTTTCGATCAGTTCG
GCAAGGGTTTCCACAGCCGTAGATGAAGACGCTATATCAAATACTCGCGA
TATCGAAGCAATGAAGAAGGGGGCTGAGATGGAGAGAAGCATGCGGGAGG
AGAGGGAAGAAGGCGCTCGCAGAATGGAGCTGGAAGAGAAAGCGGTTCGG
GAAGCGGTGGCGGCGAAGGAGGCACGACAGAGGCAGCGCGAAGCGGAGAG
ACGGAAAGACCTGGAACGAAAGGCTCTCGCGGACGCCAAAGACAAGAGGC
TCGAAGAGGCGCGTGCTTTGAGGGAGAAGCAACAGCGGGAACAGAGAGCG
CGCGAAGAGCAGAGGGGCAGAGACGAGAAGAGGGCGAAGGATGAACAAGC
AGCGAGACTGCGCGAGCAGAAGGCGAGTGAGGAGCGAAAAGCACGAGACG
CGGCAGTGACGAAGGCGAAACTGGAGGCGGAGCAAACGGTATGGTTACCA
ACATTCGGTTGGACGAGCTGCGAACGAATCACATGGACCGCAAGCGTCTA
TGTCCGCTTGCGTAACGATGCACGTAGAGCTTGTTTTCAAACCCTAGGAT
ATAGGGAGGCCTTTGTGAGTGTCGCCAGAGCGTCCCTGTCAAGAAGGCAT
CGGTAGAAGGCAGCGAGTGGACCATGGATTTTGCTTGTTCCAACGCAAGG
GCCACGTTCACTCGGCACAGCTTTACAGGCCGGCGGTAACCTTGTGGACA
CCTTTTTGCCACTCGTGGACAGAAAAAGCGCGCTAAGATGGCTGCTACCC
TGGATCAGAGGCGGTCTATCGGGTTGGAAGATTCCCTAACGAACGGCTCA
ACGGAACTGAGAGTGATGCCGAACGGCGACTTGGTCCTAGCTGACAACGG
ACGTCCGGTGAGATCACACGTTCGTCCACAGATGGTGAAGGAGGAGGGGC
GGGGGCGGGGTGGTTCGGTGGTAGGTCTTGCCTATGGGCGGCCTGCGGCG
TTCATCATGTTGGAAAACAAAGCATCGCGCCGGTCGCTTTGATTCACTTT
CGAAACTGAGAATTACAACCCTTAGACACTGCATGATGTGTTGCAACGAA
TAGGCGCCTTGCTCCATACCATTAATCCAATGATCACCCGTCGCATTCGG
GATAAATGTGTATTGAGGTGAACGGGAGTCAAAGTTGGCTCGACCACGAA
GTGTCTTGGAACGTTGACATCCCTTCGTAGTGGAGGGACTTGGCGGGGCG
GCATGCGTTTGGTAGATGAGACCAATTGGGTTGGTCTTCGGAGGTTGCTT
TCCTTCTGCTCGGCCAGGGAGCACATGTCATACGCACACCCCGCCCGCTC
TTCACAAGGGAACGCTTGTAGGAGAATTGTTCAACCTGAGCTGCCTTCGT
GTAGCCAGGGATGAAAACGCGCCCGTGCTGCACCCCTGGAGTGCTCGCCT
GGACCCGAAACTCAGTCTCAAGCCAGGCTCTGGTTTCCAGGAAGAGAGCA
TGGGAGACTTTGATCGTGGCGTGCTTGTAACTGGCCGGAACCCCTTCCCC
TTGCTCGCTGATGTACCACTCGTTTTAGCCGCCGTCTTTTGTCGGGCATG
GAACCCCGGAGTACGCATCGCTCTTTCGCTTATGCGCTGGTTTGGGTGGC
CCGTTTATCTGCGGTTGCTTTGTTCTGGGTCACTGTTTATTCAGGTTTGG
ACGGCCCGGGGATCAAAGAAGCGCCGCAGCCTGGTCGGGTGGATCTGGAG
GAAGGTCCGGCGACAGCACGCGGTGCGGCCTTGCACGGCGTGCCGGTTGA
CGGTCGCTCCCGAGGGAAGAGTGGTACGTTGTATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16246:72..3459+

>mRNA_Ecto-sp13_S_contig16246.4532.1 ID=mRNA_Ecto-sp13_S_contig16246.4532.1|Name=mRNA_Ecto-sp13_S_contig16246.4532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16246:72..3459+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGACCTCCACCCGCTGAGTGCGGCGGGGTACCTTATTCTCTCCGTCGA
GGCCCTGGTAATCACCTTCTCGTGGCCGCGTCTATACCCCCCGGCGGGTC
GGAAACGGAGTGAGAGCAGCGCACGACACCGTCAGCAGCGCCGTCGGAGT
CGGCAGCTTAGCAGCAGCGGCAGCGCCGATCTATTCGGGGGTGCTACTCC
GTCCCCCACCATCAACGGGCAGAGGTTCAATACTAACGGTGGCAAGGCGT
CGTCGCGCTGGAGCGGAGGCAGTAGCGGATGGTGGGAGAGCGAGGGTGGG
CTAGAGGGCTTGAGCGAGGCAGGCAGGAGCAGTGCGCCGTCTTCTCTTGT
GTCCATCGGTGGCAGAAGAAGAAGAGCAGCACGCTTACAGTCAGGTCAAT
CCGGCGGCGGTGGCTTTGTAGGCGAGGATTCCTTGGAAACGTTTCCTGAG
AAGCGGTCCGCCGTTGACGGGGATGTGCGAGTCCCGCTCCCGCCAAAATC
ACGGATGCGATACGCCCGACCGGTCCTTCTAGTGCTGCTCACGCTCTCGG
CGAGCTACCTCACCACGTGGCTGCTCCTTTCGATCAGTTCGGCAAGGGTT
TCCACAGCCGTAGATGAAGACGCTATATCAAATACTCGCGATATCGAAGC
AATGAAGAAGGGGGCTGAGATGGAGAGAAGCATGCGGGAGGAGAGGGAAG
AAGGCGCTCGCAGAATGGAGCTGGAAGAGAAAGCGGTTCGGGAAGCGGTG
GCGGCGAAGGAGGCACGACAGAGGCAGCGCGAAGCGGAGAGACGGAAAGA
CCTGGAACGAAAGGCTCTCGCGGACGCCAAAGACAAGAGGCTCGAAGAGG
CGCGTGCTTTGAGGGAGAAGCAACAGCGGGAACAGAGAGCGCGCGAAGAG
CAGAGGGGCAGAGACGAGAAGAGGGCGAAGGATGAACAAGCAGCGAGACT
GCGCGAGCAGAAGGCGAGTGAGGAGCGAAAAGCACGAGACGCGGCAGTGA
CGAAGGCGAAACTGGAGGCGGAGCAAACGAAAAAGCGCGCTAAGATGGCT
GCTACCCTGGATCAGAGGCGGTCTATCGGGTTGGAAGATTCCCTAACGAA
CGGCTCAACGGAACTGAGAGTGATGCCGAACGGCGACTTGGTCCTAGCTG
ACAACGGACGTCCGGTTTGGACGGCCCGGGGATCAAAGAAGCGCCGCAGC
CTGGTCGGGTGGATCTGGAGGAAGGTCCGGCGACAGCACGCGGTGCGGCC
TTGCACGGCGTGCCGGTTGACGGTCGCTCCCGAGGGAAGAGTGGTACGTT
GTATTTGA
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