mRNA_Ecto-sp13_S_contig1624.4526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1624.4526.1
Unique NamemRNA_Ecto-sp13_S_contig1624.4526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1624.4526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1624contigEcto-sp13_S_contig1624:6587..6927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size341
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.3824592-UTR-Ecto-sp13_S_contig1624:6586..66051681462855.3824592-UTR-Ecto-sp13_S_contig1624:6586..6605Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1624 6587..6605 +
1681462855.3994584-UTR-Ecto-sp13_S_contig1624:6920..69271681462855.3994584-UTR-Ecto-sp13_S_contig1624:6920..6927Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1624 6921..6927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462855.391209-CDS-Ecto-sp13_S_contig1624:6605..69201681462855.391209-CDS-Ecto-sp13_S_contig1624:6605..6920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1624 6606..6920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1624.4526.1prot_Ecto-sp13_S_contig1624.4526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1624 6606..6920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1624.4526.1

>prot_Ecto-sp13_S_contig1624.4526.1 ID=prot_Ecto-sp13_S_contig1624.4526.1|Name=mRNA_Ecto-sp13_S_contig1624.4526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MNRSAPHRGTSRKSVQAFFSRSGLSYSVTQARINPQHTVTVFPRSHSFIP
RGHGIFSFHLFYFHRSHTTNNKITVPTHTTTGVRSAQPTLGRPRFLAGCR
HSAS*
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mRNA from alignment at Ecto-sp13_S_contig1624:6587..6927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1624.4526.1 ID=mRNA_Ecto-sp13_S_contig1624.4526.1|Name=mRNA_Ecto-sp13_S_contig1624.4526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1624:6587..6927+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGAATTTTGCCCTCGGATGAACCGCTCCGCTCCGCACCGTGGGACTT
CCCGAAAATCCGTACAAGCGTTTTTTTCACGGAGCGGTTTGAGCTACTCC
GTGACGCAAGCACGGATAAATCCGCAACATACAGTCACGGTTTTCCCACG
GAGTCACAGTTTTATCCCACGGGGTCACGGCATTTTTTCTTTTCATCTGT
TCTACTTTCACAGGAGCCACACAACAAATAACAAAATAACCGTTCCAACA
CACACAACAACAGGAGTCCGCTCCGCACAACCAACACTAGGACGTCCTCG
GTTTCTAGCGGGATGCCGGCATTCCGCGTCATGACCCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1624:6587..6927+

>mRNA_Ecto-sp13_S_contig1624.4526.1 ID=mRNA_Ecto-sp13_S_contig1624.4526.1|Name=mRNA_Ecto-sp13_S_contig1624.4526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1624:6587..6927+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGCTCCGCTCCGCACCGTGGGACTTCCCGAAAATCCGTACAAGC
GTTTTTTTCACGGAGCGGTTTGAGCTACTCCGTGACGCAAGCACGGATAA
ATCCGCAACATACAGTCACGGTTTTCCCACGGAGTCACAGTTTTATCCCA
CGGGGTCACGGCATTTTTTCTTTTCATCTGTTCTACTTTCACAGGAGCCA
CACAACAAATAACAAAATAACCGTTCCAACACACACAACAACAGGAGTCC
GCTCCGCACAACCAACACTAGGACGTCCTCGGTTTCTAGCGGGATGCCGG
CATTCCGCGTCATGA
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