mRNA_Ecto-sp13_S_contig1622.4519.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1622.4519.1
Unique NamemRNA_Ecto-sp13_S_contig1622.4519.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 2.000e-66
Identity = 100/110 (90.91%), Postives = 102/110 (92.73%), Query Frame = 3
Query:   12 DDPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGTGVNAARVGGGSGGGEGVEFTGDNAV 341
            DDPARACD+ EWSTGQACIVCF  YEPGDRLARLPCRHVYHAQCIDEWLDRAKLP CPLCKTDLRH+TPPDDRS SIST G AGT VNAARVGGGSGGGEGVEFTGDNAV
Sbjct:  142 DDPARACDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGGEGVEFTGDNAV 251          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.440e-49
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 AEEDDPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAG 254
            AEEDDPARACDS EWSTGQACIVCFG YEPGDRLARLPCRHVYHAQCIDEWLDRAKLP CPLCKTDLRH+TPPDD   SISTAG
Sbjct:  239 AEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAG 322          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.700e-44
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 3
Query:    3 AEEDDPARA-CDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAG 254
            A EDDP RA  DS EWSTGQACIVCFG YEPGDRLA LPCRHVYHAQCIDEWLDRAK+P CPLCKTDLRH+TPPDDRS SISTAG
Sbjct:  331 AAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 415          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-18
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   36 SREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
            S  WS  ++CI+CFG Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P + S +  TA   GT
Sbjct:   69 SELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETADGGGT 145          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 7.680e-18
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   36 SREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
            S  WS+G++CI+CFG Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P + S +    G  GT
Sbjct:  449 SELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGGAGGT 525          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.050e-15
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   42 EWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 203
            E STG +CIVCFG Y  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  245 EGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.240e-14
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 3
Query:   42 EWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDL 203
            E ST  +CIVCFG Y  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  252 EGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A7S0KPS9_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KPS9_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 4.010e-11
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 3
Query:   12 DDPARACDSREWSTGQA------CIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHST 215
            +D  RA   R ++  Q       C VC    E G+    LPC+HVYH +CID WL+R+KL  CP+CK D+  ST
Sbjct:  194 EDARRAMTVRPYARAQGETENACCSVCLSQLENGEEAKYLPCKHVYHPECIDRWLERSKL--CPVCKRDVTAST 265          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A316U4X8_9BASI (RING-type domain-containing protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U4X8_9BASI)

HSP 1 Score: 68.2 bits (165), Expect = 5.940e-11
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   15 DPARACDSREWSTGQACIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCKTDLRHSTPPDDRSSSISTAGRAGT 266
            + + A D R + +   C +C  ++E G+R+  LPC+H++H  CIDEWL + K   CP C+ D+    PP   + S   AG A T
Sbjct:  418 ESSSAADQRLYYSADECAICLANFEDGERVRLLPCQHLFHKACIDEWLIKIKK-FCPSCRRDITVPVPPAPSAVSPGAAGEAET 500          
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Match: A0A2K1KK58_PHYPA (RING-type domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KK58_PHYPA)

HSP 1 Score: 67.0 bits (162), Expect = 1.130e-10
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   33 DSREWSTGQA-CIVCFGHYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPCCPLCK---------TDLRHST 215
            DS++ ST Q  C+VC   YE GD++ RLPC+H YH++CI +WL   K+  CP+C          +D++HST
Sbjct:  258 DSKDISTDQEQCVVCRLEYEKGDKMLRLPCKHHYHSECIQQWLQHNKV--CPVCSAEVTIESSSSDVKHST 326          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1622.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEY0_9PHAE2.000e-6690.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI2.440e-4991.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI3.700e-4487.06RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE1.800e-1850.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI7.680e-1850.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI3.050e-1562.96RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE4.240e-1461.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0KPS9_9CHLO4.010e-1143.24Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A316U4X8_9BASI5.940e-1136.90RING-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A2K1KK58_PHYPA1.130e-1043.66RING-type domain-containing protein n=2 Tax=Physco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1622contigEcto-sp13_S_contig1622:15337..16324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size359
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.9969692-CDS-Ecto-sp13_S_contig1622:15338..155551681462854.9969692-CDS-Ecto-sp13_S_contig1622:15338..15555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1622 15339..15555 -
1681462855.007642-CDS-Ecto-sp13_S_contig1622:16184..163241681462855.007642-CDS-Ecto-sp13_S_contig1622:16184..16324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1622 16185..16324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1622.4519.1prot_Ecto-sp13_S_contig1622.4519.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1622 15339..16324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1622.4519.1

>prot_Ecto-sp13_S_contig1622.4519.1 ID=prot_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
RQRRTTRPGLATRESGRRVKRASCASATTSPEIGWPACRAGTYTTHSAST
SGWTGRNSLAVRCARRTSAIPRPPMIVLVASLLLVGPVQVSMLPELEEAA
VGGRGSSSRATTPCKKKIG
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mRNA from alignment at Ecto-sp13_S_contig1622:15337..16324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1622.4519.1 ID=mRNA_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1622:15337..16324- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGAGGAGGACGACCCGGCCAGGGCTTGCGACTCGCGAGAGTGGTCG ACGGGTCAAGCGTGCATCGTGTGCTTCGGCCACTACGAGCCCGGAGATCG GTTGGCCCGCCTGCCGTGCCGGCACGTATACCACGCACAGGTATACATTA TTCATCTGCGCGGGCGCGTGTGTGTTTGAGTGTATTACTTCCATCGACCG CGCGAACCGGCTGACCAATGAAAAATGTCAGTCTCAGTGGGGTTGAAATG CATGTGTGTGTGTTTGTGTGCGTTTGTTTTAACGCTAATACTTCGTGTAA TTTGTACTTCCAAGTAGTCGATTACGGCGGGGATCGCGCGAGGCGATCCA AGGTCGTTTTTCGAACCGCACGGACTTGCTCATGTCGAAGGTGTCGGGGG AGGGCCTACGACAAGCAGTCGACGGTGTAGCGTGGCCATCTCGAGATGTA TCTTCGTGTGGACCAAGTGTGGATACGGTTGGGGGGGCAGCGGGGTGACT ATAGTGACACCACAAATATGTGTCGGTTCGTGTACGGTTTGTATTACTAA ATCTATCATTAGCTCTATACCCATGTCTAAGGAGTTCCCGGGACAGATTT TCTACGACTGCGCGGTGTGCACGCTTTCGGCGGGAGGGAAGCGTAAAGAT CGTTCACACATGAACCCACTCTCCGGGCACCAAGCTAAACCCTCCCTCCT TCCGGCCGCCCCCCCACCCTTCGTGTTATCCCCTGGGCATCGAAAATCCA ATCCAATCGCCATCATCAGTGCATCGACGAGTGGTTGGACCGGGCGAAAC TCCCTTGCTGTCCGCTGTGCAAGACGGACCTCCGCCATTCCACGCCCCCC GATGATCGTTCTAGTAGCATCTCTACTGCTGGTAGGGCCGGTACAGGTGT CAATGCTGCCAGAGTTGGAGGAGGCAGCGGTGGGGGGGAGGGGGTCGAGT TCACGGGCGACAACGCCGTGTAAGAAGAAAATAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1622:15337..16324-

>mRNA_Ecto-sp13_S_contig1622.4519.1 ID=mRNA_Ecto-sp13_S_contig1622.4519.1|Name=mRNA_Ecto-sp13_S_contig1622.4519.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1622:15337..16324- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGAGGAGGACGACCCGGCCAGGGCTTGCGACTCGCGAGAGTGGTCG
ACGGGTCAAGCGTGCATCGTGTGCTTCGGCCACTACGAGCCCGGAGATCG
GTTGGCCCGCCTGCCGTGCCGGCACGTATACCACGCACAGTGCATCGACG
AGTGGTTGGACCGGGCGAAACTCCCTTGCTGTCCGCTGTGCAAGACGGAC
CTCCGCCATTCCACGCCCCCCGATGATCGTTCTAGTAGCATCTCTACTGC
TGGTAGGGCCGGTACAGGTGTCAATGCTGCCAGAGTTGGAGGAGGCAGCG
GTGGGGGGGAGGGGGTCGAGTTCACGGGCGACAACGCCGTGTAAGAAGAA
AATAGGT
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