mRNA_Ecto-sp13_S_contig16210.4514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16210.4514.1
Unique NamemRNA_Ecto-sp13_S_contig16210.4514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A6H5L0S4_9PHAE (Methyltransf_21 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0S4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.080e-28
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 MADLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            MADLGVDKIDLLKIDVEG E DVL GIEQQDWPKIKQVVAEVHPVGDRVTRACELL RHG
Sbjct:  844 MADLGVDKIDLLKIDVEGTEFDVLRGIEQQDWPKIKQVVAEVHPVGDRVTRACELLRRHG 903          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A5C2CYN7_9BACT (Condensation domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A5C2CYN7_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 4.630e-17
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 MADLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            +A+ GV +IDLLK+DVE AELDVL GI ++DW KI+QVV EVH VGDR+ R   +LGRHG
Sbjct: 1055 VAERGVTRIDLLKLDVEKAELDVLEGIREEDWAKIRQVVMEVHDVGDRLARITGMLGRHG 1114          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: B2ITS1_NOSP7 (Methyltransferase n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) TaxID=63737 RepID=B2ITS1_NOSP7)

HSP 1 Score: 75.1 bits (183), Expect = 3.280e-16
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   13 GVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
             V +IDLLK++V+ ++LDVLLG+E+QDWPKIKQVV EVH + +RV R  ELL ++G
Sbjct:   17 NVQQIDLLKVNVKRSKLDVLLGVEEQDWPKIKQVVVEVHDLDNRVKRITELLQKYG 72          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A1Z4JR34_LEPBY (Methyltransferase FkbM family protein n=2 Tax=Leptolyngbya boryana TaxID=1184 RepID=A0A1Z4JR34_LEPBY)

HSP 1 Score: 77.4 bits (189), Expect = 1.220e-15
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    7 DLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            D  V +IDLLKIDVE +ELDVL+GIE QDW KIKQ+  EVH    RV R CELL  HG
Sbjct:  193 DHSVQQIDLLKIDVERSELDVLMGIEPQDWCKIKQITIEVHDHSQRVDRVCELLKSHG 250          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A1Z4Q5P2_9CYAN (Methyltransferase n=1 Tax=Scytonema sp. NIES-4073 TaxID=2005464 RepID=A0A1Z4Q5P2_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   16 VDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            V +IDLLK+DVE +ELDVLLGIE+QDW KIKQVV EVH +  R+ +   LL  HG
Sbjct:   20 VQQIDLLKVDVERSELDVLLGIEEQDWQKIKQVVMEVHNLDGRIEKITALLKEHG 74          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A1Z4R1M3_9CYAN (Methyltransferase FkbM family protein n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R1M3_9CYAN)

HSP 1 Score: 73.6 bits (179), Expect = 3.560e-15
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   13 GVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRH 177
             + +IDLLKIDVE +ELDV LGI++QDW KIKQVV EVH +  RV +  ELL  H
Sbjct:   63 NIQQIDLLKIDVEKSELDVFLGIDEQDWQKIKQVVVEVHDIDGRVEKITELLNNH 117          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: UPI000493F90B (FkbM family methyltransferase n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI000493F90B)

HSP 1 Score: 74.3 bits (181), Expect = 6.870e-15
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 MADLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            MA+L +  IDLLKIDVE +ELDV+ GIE +DW KIKQ++ EVH + DR++   ++L  HG
Sbjct:  125 MAELNISAIDLLKIDVEKSELDVIHGIEDRDWEKIKQIIIEVHDISDRISVLTQILYSHG 184          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: UPI0019F22C64 (FkbM family methyltransferase n=1 Tax=Calothrix sp. C42_A2020_038 TaxID=2774333 RepID=UPI0019F22C64)

HSP 1 Score: 75.1 bits (183), Expect = 8.920e-15
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   13 GVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
             +++IDL+KIDVE +ELDVLLGIE QDW KIKQVV EVH + +RVT+  +LL ++G
Sbjct:  194 NIEQIDLVKIDVERSELDVLLGIEAQDWQKIKQVVLEVHDLNNRVTKVTDLLMQNG 249          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A1W6N2E1_9HYPH (Uncharacterized protein n=2 Tax=Methylocystis bryophila TaxID=655015 RepID=A0A1W6N2E1_9HYPH)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 MADLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            + + GV++IDLLKIDVE AE +VL GIE+ DW KI+Q+V EVH V DR  +  ELL RHG
Sbjct: 2253 LRETGVERIDLLKIDVENAEFEVLQGIEELDWSKIEQLVVEVHDVDDRRRKILELLRRHG 2312          
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Match: A0A6P0WMX0_9CYAN (FkbM family methyltransferase n=4 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0WMX0_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.750e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 VDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVTRACELLGRHG 180
            +++IDLLKIDVE +ELDVLLGIE QDW K+KQ+V EVH + DR+ +   LL  HG
Sbjct:  195 IEQIDLLKIDVEKSELDVLLGIEAQDWQKLKQIVVEVHNIEDRLQKITTLLKEHG 249          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16210.4514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0S4_9PHAE1.080e-2893.33Methyltransf_21 domain-containing protein n=2 Tax=... [more]
A0A5C2CYN7_9BACT4.630e-1765.00Condensation domain-containing protein n=1 Tax=unc... [more]
B2ITS1_NOSP73.280e-1660.71Methyltransferase n=1 Tax=Nostoc punctiforme (stra... [more]
A0A1Z4JR34_LEPBY1.220e-1565.52Methyltransferase FkbM family protein n=2 Tax=Lept... [more]
A0A1Z4Q5P2_9CYAN1.840e-1563.64Methyltransferase n=1 Tax=Scytonema sp. NIES-4073 ... [more]
A0A1Z4R1M3_9CYAN3.560e-1561.82Methyltransferase FkbM family protein n=1 Tax=Calo... [more]
UPI000493F90B6.870e-1555.00FkbM family methyltransferase n=1 Tax=Acaryochlori... [more]
UPI0019F22C648.920e-1562.50FkbM family methyltransferase n=1 Tax=Calothrix sp... [more]
A0A1W6N2E1_9HYPH1.740e-1460.00Uncharacterized protein n=2 Tax=Methylocystis bryo... [more]
A0A6P0WMX0_9CYAN1.750e-1461.82FkbM family methyltransferase n=4 Tax=Oscillatoria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16210contigEcto-sp13_S_contig16210:1365..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.9
Seed ortholog evalue6.4e-24
Seed eggNOG ortholog2880.D7FV91
Model size180
KEGG rclassRC00005,RC00059
KEGG koko:K04628
KEGG ReactionR01500,R04322,R06277,R10804
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.transferase activity, transferring hexosyl groups
EggNOG OGsKOG1192@1,KOG1192@2759
EC2.4.1.47
Cds size180
COG Functional cat.G
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.688002-CDS-Ecto-sp13_S_contig16210:1364..14271681462854.688002-CDS-Ecto-sp13_S_contig16210:1364..1427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16210 1365..1427 +
1681462854.7004008-CDS-Ecto-sp13_S_contig16210:1777..18941681462854.7004008-CDS-Ecto-sp13_S_contig16210:1777..1894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16210 1778..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16210.4514.1prot_Ecto-sp13_S_contig16210.4514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16210 1365..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16210.4514.1

>prot_Ecto-sp13_S_contig16210.4514.1 ID=prot_Ecto-sp13_S_contig16210.4514.1|Name=mRNA_Ecto-sp13_S_contig16210.4514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MADLGVDKIDLLKIDVEGAELDVLLGIEQQDWPKIKQVVAEVHPVGDRVT
RACELLGRHG
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mRNA from alignment at Ecto-sp13_S_contig16210:1365..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16210.4514.1 ID=mRNA_Ecto-sp13_S_contig16210.4514.1|Name=mRNA_Ecto-sp13_S_contig16210.4514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16210:1365..1894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGACCTCGGGGTGGATAAGATCGACTTGCTCAAAATCGACGTGGA GGGGGCGGAATTGGTGAGGCAGAGCGCAGCGGCGTGCACCCTCGCTTACA CGCCGACGCTTCCCCCGATCTGTAGATGTTGGTGACCGAACTGTCTCGTA CGTCACGGTCGATGGTGCCCTCTCATGACGTGGCGCTGAGCTTACACAGT CTCCTTCGCCCTTTCGTCGGGTACTGGCGTTGGCCTTTTGCCTGGCCTGG ACCGGCCAATACCCGCCATTGATTCTACGCGTACCTCCAATAGAGACCGC CCTTGGTTTTGAGCTTCGGTTGTTGCTTACGAGCTACCCCTAAGCTCTTT ACACGATATTGTCGTCGCGTGCCGTCGTTTGCGAAATGGTTGATGTATCC GTACCTTGACCAGGACGTGCTACTTGGAATCGAACAACAAGATTGGCCCA AGATCAAGCAAGTTGTGGCCGAGGTACATCCTGTGGGAGACCGCGTCACG CGGGCATGCGAGCTGCTCGGACGTCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16210:1365..1894+

>mRNA_Ecto-sp13_S_contig16210.4514.1 ID=mRNA_Ecto-sp13_S_contig16210.4514.1|Name=mRNA_Ecto-sp13_S_contig16210.4514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16210:1365..1894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGACCTCGGGGTGGATAAGATCGACTTGCTCAAAATCGACGTGGA
GGGGGCGGAATTGGACGTGCTACTTGGAATCGAACAACAAGATTGGCCCA
AGATCAAGCAAGTTGTGGCCGAGGTACATCCTGTGGGAGACCGCGTCACG
CGGGCATGCGAGCTGCTCGGACGTCATGGG
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