mRNA_Ecto-sp13_S_contig16197.4506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16197.4506.1
Unique NamemRNA_Ecto-sp13_S_contig16197.4506.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: D7G8H9_ECTSI (VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.750e-24
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            VTSV+TSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG
Sbjct:  852 VTSVFTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 901
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A3R6Y0L7_9STRA (YHYH domain-containing protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y0L7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.660e-8
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            + SV ++K  G YG GE +   V ++HP+ + GTP++ LNSGG A FTLG
Sbjct: 2077 IVSVVSTKPSGTYGTGEGIDFVVEFTHPVVITGTPSIALNSGGSAKFTLG 2126
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A6A5AXA9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AXA9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.000e-8
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            + SV ++K  G YG GE +   V ++HP+ + GTP++ LNSGG A FTLG
Sbjct:  531 IVSVVSTKPSGTYGTGEGIDFVVEFTHPVVITGTPSIALNSGGSARFTLG 580
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A485LQN7_9STRA (Aste57867_24559 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQN7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.280e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTL 147
            V +V ++K  G+YG GE + + V +SHP+ + GTP++ LNSGG A FTL
Sbjct: 2017 VVAVTSTKAAGLYGAGEAIDILVQFSHPVLITGTPSIALNSGGAALFTL 2065
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A418AWI1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AWI1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.020e-6
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            V +V + K  G YG  E +   V ++HP+ V GTP++ LNSGG A +TLG
Sbjct: 2012 VVAVTSLKASGTYGTDESIDFVVEFTHPVVVTGTPSIALNSGGSALYTLG 2061
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A024TRJ9_9STRA (YHYH domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRJ9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.020e-6
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            V +V + K  G YG  E +   V ++HP+ V GTP++ LNSGG A +TLG
Sbjct: 2037 VVAVTSLKASGTYGTDESIDFVVEFTHPVVVTGTPSIALNSGGSALYTLG 2086
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BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Match: A0A1T5MEZ2_9CLOT (Zn-ribbon protein, possibly nucleic acid-binding (Fragment) n=1 Tax=Maledivibacter halophilus TaxID=36842 RepID=A0A1T5MEZ2_9CLOT)

HSP 1 Score: 50.8 bits (120), Expect = 5.490e-6
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG 150
            +  V +SK+DGVY EGEE+ + + +S  ++++G+ T+ LNSGG A ++ G
Sbjct:  882 IEKVTSSKDDGVYKEGEEIQIEIQFSEVVNIIGSSTLNLNSGGSAHYSSG 931
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16197.4506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8H9_ECTSI2.750e-2498.00VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A3R6Y0L7_9STRA3.660e-848.00YHYH domain-containing protein n=14 Tax=Aphanomyce... [more]
A0A6A5AXA9_9STRA5.000e-848.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485LQN7_9STRA3.280e-748.98Aste57867_24559 protein n=1 Tax=Aphanomyces stella... [more]
A0A418AWI1_9STRA4.020e-646.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024TRJ9_9STRA4.020e-646.00YHYH domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A1T5MEZ2_9CLOT5.490e-642.00Zn-ribbon protein, possibly nucleic acid-binding (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16197contigEcto-sp13_S_contig16197:742..891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.4
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog2880.D7G8H9
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CN6T@1,2QU8Z@2759
Cds size150
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462854.340422-CDS-Ecto-sp13_S_contig16197:741..8911681462854.340422-CDS-Ecto-sp13_S_contig16197:741..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16197 742..891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16197.4506.1prot_Ecto-sp13_S_contig16197.4506.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16197 742..891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16197.4506.1

>prot_Ecto-sp13_S_contig16197.4506.1 ID=prot_Ecto-sp13_S_contig16197.4506.1|Name=mRNA_Ecto-sp13_S_contig16197.4506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
VTSVYTSKEDGVYGEGEEVALYVVYSHPMDVLGTPTVPLNSGGEASFTLG
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mRNA from alignment at Ecto-sp13_S_contig16197:742..891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16197.4506.1 ID=mRNA_Ecto-sp13_S_contig16197.4506.1|Name=mRNA_Ecto-sp13_S_contig16197.4506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16197:742..891- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACTTCAGTTTACACCTCAAAGGAGGACGGCGTGTACGGGGAGGGCGA
GGAAGTGGCCCTGTACGTGGTGTACAGCCACCCTATGGACGTCCTCGGGA
CGCCAACGGTGCCCTTGAATTCCGGAGGGGAGGCGTCGTTCACCCTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16197:742..891-

>mRNA_Ecto-sp13_S_contig16197.4506.1 ID=mRNA_Ecto-sp13_S_contig16197.4506.1|Name=mRNA_Ecto-sp13_S_contig16197.4506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16197:742..891- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACTTCAGTTTACACCTCAAAGGAGGACGGCGTGTACGGGGAGGGCGA
GGAAGTGGCCCTGTACGTGGTGTACAGCCACCCTATGGACGTCCTCGGGA
CGCCAACGGTGCCCTTGAATTCCGGAGGGGAGGCGTCGTTCACCCTGGGG
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