mRNA_Ecto-sp13_S_contig161.4455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig161.4455.1
Unique NamemRNA_Ecto-sp13_S_contig161.4455.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig161.4455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig161contigEcto-sp13_S_contig161:10602..12029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size427
Hectar predicted targeting categoryother localisation
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.541045-CDS-Ecto-sp13_S_contig161:10603..108061681462849.541045-CDS-Ecto-sp13_S_contig161:10603..10806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig161 10604..10806 -
1681462849.5522757-CDS-Ecto-sp13_S_contig161:11283..114161681462849.5522757-CDS-Ecto-sp13_S_contig161:11283..11416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig161 11284..11416 -
1681462849.562465-CDS-Ecto-sp13_S_contig161:11942..120291681462849.562465-CDS-Ecto-sp13_S_contig161:11942..12029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig161 11943..12029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig161.4455.1prot_Ecto-sp13_S_contig161.4455.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig161 10604..12029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig161.4455.1

>prot_Ecto-sp13_S_contig161.4455.1 ID=prot_Ecto-sp13_S_contig161.4455.1|Name=mRNA_Ecto-sp13_S_contig161.4455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
DHSAVTVGYRVRRMPSKYTQHAREELAAMSEPSQLHQVSVKQDYDLQACR
HHQGNLESNLALSDVLSPTTNIIGGETLCPPDTAVQRISHENVANVVEEH
DPARRNSLVSLSSIAGVGDELVAEGQDQEERTLVLSVPRGG
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mRNA from alignment at Ecto-sp13_S_contig161:10602..12029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig161.4455.1 ID=mRNA_Ecto-sp13_S_contig161.4455.1|Name=mRNA_Ecto-sp13_S_contig161.4455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig161:10602..12029- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCATTCCGCGGTTACCGTTGGTTACCGCGTGAGGAGAATGCCGTCGAA
GTATACACAACATGCAAGGGAAGAGCTGGCGGCAATGGTGCGAAAGTAGT
GTCACTGGTGTGTGCATGATTTTTGATGGTCGCGTCCCTCAACCGAGAAA
ACTTCGGTCTGCGAGTGTAATGAACCATTTCGATATTTCAGGAACGGGGG
ATGTAACTTGTGGGTAGGGCGGGACCAGCAGTGGTGGGTTTGGAGATATT
TGCGTTTCCGGGTGTTTCATCGCACTTTTGTCCATCAATGACGAGGTCAT
GGCGAGGCTTTGTTTTGCGGAAGCGGAAACCGAGAAGGTGCGGTGCCTGT
GTTTGGGTTGCAGGAGAACCGCTGTATCGCAGTTTTGGGCGGGAAAAAAG
CCAACCGTCAGCCTGCTCGCACATGATTTTGCGGTTTTTTCCTTGGTGTA
TCGTCCTTGGAAGGACGGTGCCTGCATTTGCTGCGCATTGCAAGGGAAAC
TACACGATACACCTGATTAGGCAAATCACCCTCCGTGAGAAAGTTTTGTT
TGGGAATTTAAATATGGTTTCGCTCTGTCCACTGCGACTTTTTGTTCCCG
TCATCTGCATAAGAGCGAGCCAAGCCAACTGCACCAGGTGTCTGTCAAGC
AGGACTATGATCTCCAGGCCTGTCGGCACCACCAGGGCAATCTCGAGTCT
AATCTCGCCCTATCCGATGTGTTGAGCCCTACCACAAACATCATCGGTGA
GTGTGTATGTAGTTCACACGAAGACCCACACATCTGAACTACAGTAGTCT
ACAGCAGTACGTGACGTGAAGGTGTGTGTGTCTCGAACGACGAATTTTCT
CGAAGTCGGCAGCAGAAATTTCGAGCCTAATCTCGCCCTATCCGATATAT
GTAGCCCTGCCACAAACAAACACCATGTTGTGTAGTTCACACGAAGATCC
AGATGTGATCAGAACTACGAAGATGACATGATGACGTTCAATGTTTGGAT
GTGTCACCCGAATGTTCTCGACGTCGTCGGTTGCCGGTATCGTTACGACG
TTTTCACACCTTTTCGTATATTTGCTTGATATATATTGGGTCACACAGGA
GGGAGGCGACACAGATTTTGAGTTTTTTCTGCTTTTTCCGGCAATGATGA
GGAGTTATATCTTGCCCGTGGTCAAGAAAATGGAGATCGACGACCATCTC
TTGTCGGATTGCCCGGCGCGCAGGTGGCGAAACGCTTTGCCCACCCGACA
CTGCTGTCCAACGAATATCGCACGAAAATGTGGCAAACGTGGTCGAGGAG
CATGACCCAGCACGCAGGAACTCATTAGTCTCCCTGTCGTCCATTGCTGG
TGTTGGCGACGAACTCGTTGCGGAGGGACAAGATCAGGAAGAACGAACCT
TGGTCTTGTCAGTTCCACGCGGCGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig161:10602..12029-

>mRNA_Ecto-sp13_S_contig161.4455.1 ID=mRNA_Ecto-sp13_S_contig161.4455.1|Name=mRNA_Ecto-sp13_S_contig161.4455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig161:10602..12029- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCATTCCGCGGTTACCGTTGGTTACCGCGTGAGGAGAATGCCGTCGAA
GTATACACAACATGCAAGGGAAGAGCTGGCGGCAATGAGCGAGCCAAGCC
AACTGCACCAGGTGTCTGTCAAGCAGGACTATGATCTCCAGGCCTGTCGG
CACCACCAGGGCAATCTCGAGTCTAATCTCGCCCTATCCGATGTGTTGAG
CCCTACCACAAACATCATCGGTGGCGAAACGCTTTGCCCACCCGACACTG
CTGTCCAACGAATATCGCACGAAAATGTGGCAAACGTGGTCGAGGAGCAT
GACCCAGCACGCAGGAACTCATTAGTCTCCCTGTCGTCCATTGCTGGTGT
TGGCGACGAACTCGTTGCGGAGGGACAAGATCAGGAAGAACGAACCTTGG
TCTTGTCAGTTCCACGCGGCGGC
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