mRNA_Ecto-sp13_S_contig16093.4452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16093.4452.1
Unique NamemRNA_Ecto-sp13_S_contig16093.4452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16093.4452.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 4.790e-38
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 2 
Query:   65 GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLDAVVAGLRRKGSNSKWRSRRGSGLSAVPSQPLVRRKENGGGNGKG 301
            GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVL+AVVAGLRRKGSNSK RSRRGSGLSAVPSQP+V+RKENGGGNGKG
Sbjct: 1051 GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPMVKRKENGGGNGKG 1129
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BLAST of mRNA_Ecto-sp13_S_contig16093.4452.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.400e-35
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:   65 GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLDAVVAGLRRKGSNSKWRSRRGSGLSAVPSQPLVRRKENGGG 289
            GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVL+AVVAGLRRKGSNSK RSRRGSGLSAVPSQPLVRRK NGGG
Sbjct: 1235 GSRLEPRRKPVLVKTGGGGSGVQGSLSEEPSPVLEAVVAGLRRKGSNSKGRSRRGSGLSAVPSQPLVRRKGNGGG 1309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16093.4452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKT0_ECTSI4.790e-3894.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE2.400e-3596.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16093contigEcto-sp13_S_contig16093:2556..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.442768-CDS-Ecto-sp13_S_contig16093:2555..28641681462849.442768-CDS-Ecto-sp13_S_contig16093:2555..2864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16093 2556..2864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16093.4452.1prot_Ecto-sp13_S_contig16093.4452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16093 2556..2864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16093.4452.1

>prot_Ecto-sp13_S_contig16093.4452.1 ID=prot_Ecto-sp13_S_contig16093.4452.1|Name=mRNA_Ecto-sp13_S_contig16093.4452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
GPQAAGRRPGQGRRPSGGGGCRFEAGASAEAGAGEDRRRRQRGPGVALGG
TVAGAGRCRGRSEAEGEQQQMEEQEGQRAERGAVAALGEEEGERRGQREG
GW*
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mRNA from alignment at Ecto-sp13_S_contig16093:2556..2864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16093.4452.1 ID=mRNA_Ecto-sp13_S_contig16093.4452.1|Name=mRNA_Ecto-sp13_S_contig16093.4452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16093:2556..2864+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCACAGGCGGCGGGGCGGCGGCCGGGGCAAGGGCGACGGCCGAGCGG
CGGCGGTGGCTGCCGGTTCGAGGCTGGAGCCTCGGCGGAAGCCGGTGCTG
GTGAAGACCGGCGGCGGCGGCAGCGGGGTCCAGGGGTCGCTCTCGGAGGA
ACCGTCGCCGGTGCTGGACGCTGTCGTGGCCGGTCTGAGGCGGAAGGGGA
GCAACAGCAAATGGAGGAGCAGGAGGGGCAGCGGGCTGAGCGCGGTGCCG
TCGCAGCCCTTGGTGAGGAGGAAGGAGAACGGCGGGGGCAACGGGAAGGG
GGGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16093:2556..2864+

>mRNA_Ecto-sp13_S_contig16093.4452.1 ID=mRNA_Ecto-sp13_S_contig16093.4452.1|Name=mRNA_Ecto-sp13_S_contig16093.4452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16093:2556..2864+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCACAGGCGGCGGGGCGGCGGCCGGGGCAAGGGCGACGGCCGAGCGG
CGGCGGTGGCTGCCGGTTCGAGGCTGGAGCCTCGGCGGAAGCCGGTGCTG
GTGAAGACCGGCGGCGGCGGCAGCGGGGTCCAGGGGTCGCTCTCGGAGGA
ACCGTCGCCGGTGCTGGACGCTGTCGTGGCCGGTCTGAGGCGGAAGGGGA
GCAACAGCAAATGGAGGAGCAGGAGGGGCAGCGGGCTGAGCGCGGTGCCG
TCGCAGCCCTTGGTGAGGAGGAAGGAGAACGGCGGGGGCAACGGGAAGGG
GGGTGGTAG
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