mRNA_Ecto-sp13_S_contig1608.4446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1608.4446.1
Unique NamemRNA_Ecto-sp13_S_contig1608.4446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1608.4446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1608contigEcto-sp13_S_contig1608:12808..13943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462849.1135457-CDS-Ecto-sp13_S_contig1608:12807..128931681462849.1135457-CDS-Ecto-sp13_S_contig1608:12807..12893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1608 12808..12893 +
1681462849.122676-CDS-Ecto-sp13_S_contig1608:13906..139431681462849.122676-CDS-Ecto-sp13_S_contig1608:13906..13943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1608 13907..13943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1608.4446.1prot_Ecto-sp13_S_contig1608.4446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1608 12808..13943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1608.4446.1

>prot_Ecto-sp13_S_contig1608.4446.1 ID=prot_Ecto-sp13_S_contig1608.4446.1|Name=mRNA_Ecto-sp13_S_contig1608.4446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
MCLSLDYPERRSEHELRLQYDTAGNFERRRSVATRLAAVGR
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mRNA from alignment at Ecto-sp13_S_contig1608:12808..13943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1608.4446.1 ID=mRNA_Ecto-sp13_S_contig1608.4446.1|Name=mRNA_Ecto-sp13_S_contig1608.4446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1608:12808..13943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTCTCTCTCGATTATCCTGAGAGACGCTCAGAGCATGAGCTACG
CCTCCAGTACGATACGGCTGGGAATTTTGAACGAAGGTGAAAGGCCGCAG
CGCTGGTCGGTGCTGGATGTTCGAAAAGCGTAGCCATGCCGCAGGTTTCA
GCGGCAAGGTTAGCAAGGCACTATAATAGTGGCCAGAGGTCAGGCTGAGT
GGAGGTTGCACGCCGAAGCGAGCAGCTAGTCTCGCATCTCGCATGATAGC
GACGTTAATCCAACCAACACGGCGGGCTGGAACCACAGACAAACAACGCG
TTCAAGGTCGATCAATCCCGTCTCCACAACCTCTCCACCCCAATCTTCAC
AGAGCAGGTTGCGATCGGTGTCCAACCTTCCCCTCTTCCCCCCAGTGCAC
CCTTGAACGGGATTTTCGATCAGCACCTTCAGGCTGTTGATCTTATCAAC
ACCCCTCAGGTTCCTGATTGTCTATCTACTGAAAAACGCGCCTGGCGGTT
ACATTGACGGATGGTCCTCACGATACCGACGCCGCCACTCGTGCCTGTAT
CATTTTCACGAGGCATAGGCCAATCATACAAAGACGCAGGAGGAACTCGA
AGCCGAGCGCCTAACCCACGCCTCACCAGGAGCTGCACCTCGAACGCGAC
CGAGACAAGCCCCAGTCAGTACGAACGAACGCGGCCAAGAGTCATGAGAC
ACGAGTCATGACTCAAAGTGACTCAAAGCCACACGACCGAGGAAAGCCCT
AAGCCATCACGCTGAAGGTGGAGGAGCTTGCTTGAGTACCAAAATGCGTG
TAAGACGAGGAAACTTGACACAAGATTGATAAGGGCGGGCGGGCGGGCGG
GCGGGCGGGCGGGCGGGGCGCGCTGTCTGTCACCGCCCTGCCCTACCCCT
TTTAGAAAAGCACTCCCTCACTTATCTCTACAACCAATTGAACCGCCCCA
AGATCACCGATGTAACAGGGTCTTCCAAAGCCGGATTTGGCGTTTGTCTC
AGATCTGGCGTGAACACAAGCAAGCGACCCAACCGACATCTCGGGGCTTT
AGATTCAACGGCAAAACAAAACTCGTCTGGATTTACTTCAAACTTGCAGA
CGAAGCGTTGCAACCCGTCTAGCTGCTGTCGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1608:12808..13943+

>mRNA_Ecto-sp13_S_contig1608.4446.1 ID=mRNA_Ecto-sp13_S_contig1608.4446.1|Name=mRNA_Ecto-sp13_S_contig1608.4446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1608:12808..13943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTCTCTCTCGATTATCCTGAGAGACGCTCAGAGCATGAGCTACG
CCTCCAGTACGATACGGCTGGGAATTTTGAACGAAGACGAAGCGTTGCAA
CCCGTCTAGCTGCTGTCGGGAGG
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