mRNA_Ecto-sp13_S_contig16048.4424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16048.4424.1 vs. uniprot
Match: D8LJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU4_ECTSI) HSP 1 Score: 396 bits (1017), Expect = 9.580e-124 Identity = 356/489 (72.80%), Postives = 371/489 (75.87%), Query Frame = 1
Query: 178 QEWLKAAQEEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPADGSKAPGDSSAVVATGAVAGXXXXXXXXGAVEAPGAGPEASGDAGKSGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAVTVDGKAEERGGEATPATSTPPVEAAAKEGEGAAALGETDKEKGXXXXXXXXX-EEGPSYGEVMEWDAQRDALELKEIMIAERTKERRRGLMREQAKGQAVVQYLTKLEREKRGRSNLLRAKGLMLADVARMLPERVKEVIELRNKIDNISQGLGGSGTNDNSGDGDGTRKAGTAESSVEGTAADTGSLAGEAKSKTKASPASEGSTNADSDTNTSPQRTSPSACSGSDMASAGAATPGSSACPDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPFAATPSCGDDAGGEGLLLGSNPDVHALTAQSMLR 1641
+EWL+AAQEEEK XXXXXXXXXXXXXXXXX V PA GSKA GDS+AVVATGAVAG GAVEAPG P ASGDAGKSG AA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AV VDGKAEE GGEA PAT T PVEAA KEGEGAAA+GETDKE+GXXXXXXXXX E GPSYGEVMEWDA+RDALELKEIMIAERT+ERRRGLMREQAKGQAVVQYLTKLERE+RGRSNLLRAKGLMLADVARMLPERVKE+IELRNKID ISQGLGGSGTNDN+G KAGTAESSVEGTAA TGSLAGEAK+K+KAS ASEGSTNA ++T QRTSPS+ SG DMASAGA TPGSSAC DGK XXXXXXXXXXXXXX FAATPSCGDDA GEGLLLGSNPDVHALTAQSMLR
Sbjct: 83 REWLQAAQEEEKQDXXXXXXXXXXXXXXXXXGDRAAESSVASTAVA---VHPAGGSKASGDSAAVVATGAVAGVGDGKGKEGAVEAPGGSPAASGDAGKSGDAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAV---------AVAVDGKAEEGGGEAKPATGTQPVEAAVKEGEGAAAVGETDKEEGXXXXXXXXXXESGPSYGEVMEWDARRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLTKLEREERGRSNLLRAKGLMLADVARMLPERVKEMIELRNKIDKISQGLGGSGTNDNNGXXXXXXKAGTAESSVEGTAAGTGSLAGEAKNKSKASRASEGSTNATANT----QRTSPSS-SGFDMASAGATTPGSSACSDGKDKGKGKARRRNDDNGKGGESAKSGVVDSMAEDEGEQEASXXXXXXXXXXXXXX--FAATPSCGDDASGEGLLLGSNPDVHALTAQSMLR 552
BLAST of mRNA_Ecto-sp13_S_contig16048.4424.1 vs. uniprot
Match: A0A6H5KRP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP0_9PHAE) HSP 1 Score: 245 bits (626), Expect = 8.180e-67 Identity = 363/549 (66.12%), Postives = 371/549 (67.58%), Query Frame = 1
Query: 1 LQAGLPEGVIVKTTKEKREEAXXXXXXXXXXXXXXXXXXXXXXTAAADAKVDPRLTPKEQEWLKAAQEEEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPADGSKAPGDSSAVVATGAVAGXXXXXXXXGAVEAPGAGPEASGDAGKSGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAVTVDGKAEERGGEATPATSTPPVEAAAKEGEGAAALGETDKEKGXXXXXXXXXEEGPSYGEVMEWDAQRDALELKEIMIAERTKERRRGLMREQAKGQAVVQYLTKLEREKRGRSNLLRAKGLMLADVARMLPERVKEVIELRNKIDNISQGLGGSGTNDNSGDGDGTRKAGTA--ESSVEGTAADTGSLAGEAKSKTKASPASEGSTNADSDTNTSPQRTSPSACSGSDMASAGAATPGSSACPDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPFAATPSCGDDAGGEGLLLGSNPDVHALTAQSMLR 1641
+QAGLPE VIVKTTKEKREEA XXXXXXXXXXXXXXXXTAAADAKVDPRLTPK+QEWLKAAQEEEK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VDPA AVVATGAVAG GAVEAPGAGPEASGDA KSGA A XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXE GPSYGE+MEWDAQRDALELKEIMIAERT+ERRRGLMREQAKGQAVVQYL KLERE+RGRSNLLRAKGLMLAD+ARMLPERVKEVIELRNKID ISQGLGGS E SV+G AA G SAGA+TPGSSAC DG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FAATPSCGDD GEGLLL SNPDVHALTAQSMLR
Sbjct: 325 VQAGLPEDVIVKTTKEKREEAEAAVKAXXXXXXXXXXXXXXXXTAAADAKVDPRLTPKQQEWLKAAQEEEKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VDPAXXXXXXXXXXAVVATGAVAGGGDGKGKEGAVEAPGAGPEASGDAEKSGAVAAGASATAMHVDSDDGGTEGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXESGPSYGELMEWDAQRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLAKLEREERGRSNLLRAKGLMLADLARMLPERVKEVIELRNKIDKISQGLGGSXXXXXXXXXXXXXXXXXXXXECSVKGIAA--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAGASTPGSSACLDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--FAATPSCGDDTSGEGLLLCSNPDVHALTAQSMLR 852 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16048.4424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16048.4424.1 >prot_Ecto-sp13_S_contig16048.4424.1 ID=prot_Ecto-sp13_S_contig16048.4424.1|Name=mRNA_Ecto-sp13_S_contig16048.4424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=548bp LQAGLPEGVIVKTTKEKREEAEAAVKAAAEATATAEAEAAKAETAAADAKback to top mRNA from alignment at Ecto-sp13_S_contig16048:345..3967+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16048.4424.1 ID=mRNA_Ecto-sp13_S_contig16048.4424.1|Name=mRNA_Ecto-sp13_S_contig16048.4424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16048:345..3967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16048:345..3967+ >mRNA_Ecto-sp13_S_contig16048.4424.1 ID=mRNA_Ecto-sp13_S_contig16048.4424.1|Name=mRNA_Ecto-sp13_S_contig16048.4424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16048:345..3967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |