mRNA_Ecto-sp13_S_contig16007.4402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16007.4402.1
Unique NamemRNA_Ecto-sp13_S_contig16007.4402.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.440e-12
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAG---TSAGLPS 171
            G+ EFNPPSWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA    TS G P+
Sbjct:  255 GYAEFNPPSWPSSCAPSKADWI---NEVVGQ---CGDGDAYPEEFWNCADISITSDGGPA 308
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.690e-12
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAGTS 156
            G+ EFNPPSWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA  S
Sbjct:  203 GYAEFNPPSWPSSCAPSKADWI---NEIVGQH--CGDGDAYPEEFWNCADVS 249
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.510e-12
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAGTS 156
            G+ EFNPPSWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA  S
Sbjct:  252 GYAEFNPPSWPSSCAPSKADWI---NEAVGQ---CGDGDAYPEEFWNCADVS 297
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.180e-11
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAGTS 156
            G+ EFNPPSWP +CAP   DW+  +       G CG G AYPEEFWNCA  S
Sbjct:  221 GYAEFNPPSWPGSCAPSKADWIKEA------VGQCGDGDAYPEEFWNCADVS 266
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.640e-11
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAG---TSAGLPSSS 177
            G+ EFNP SWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA    TS G P ++
Sbjct:  259 GYAEFNPESWPSSCAPSKADWI---NEVVGQ---CGDGDAYPEEFWNCADISITSDGGPGTA 314
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.670e-11
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAG---TSAGLPSSS 177
            G+ EFNP SWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA    TS G P+ S
Sbjct:  254 GYAEFNPESWPSSCAPTKADWI---NEVVGH---CGDGDAYPEEFWNCADISITSDGDPAPS 309
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.160e-11
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAGTS 156
            G+ EFNP SWPS+CAP   DW+   N  +G    CG G AYPEEFWNCA  S
Sbjct:  254 GYAEFNPDSWPSSCAPTKADWI---NELVG---FCGDGDAYPEEFWNCADIS 299
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.380e-11
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAGTS 156
            G+DEF+PPSWPSTCAP   DW+ + N YI     CG   AYPEEFW C+  S
Sbjct:  253 GYDEFDPPSWPSTCAPNKSDWIEL-NRYI-----CGEEGAYPEEFWACSDIS 298
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BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: A0A6H5L279_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L279_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.110e-10
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCA 147
            G++EFNPPSWPS CAP+ EDWV  +         CG G  YPEEFW C+
Sbjct:  150 GYEEFNPPSWPSACAPDKEDWVDTTGQ------ACGQGGYYPEEFWACS 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.640e-10
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCA 147
            G++EFNPPSWPS CAP  EDWV  +         CG G  YPEEFW C+
Sbjct:  256 GYEEFNPPSWPSACAPNKEDWVDTTRE------ACGQGGYYPEEFWACS 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16007.4402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LM93_ECTSI1.440e-1256.67EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FP25_ECTSI1.690e-1259.62EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI2.510e-1259.62EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE1.180e-1155.77CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMF4_ECTSI1.640e-1153.23EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LM92_ECTSI1.670e-1154.84EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE3.160e-1157.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI4.380e-1157.69EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L279_9PHAE1.110e-1055.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZR0_ECTSI2.640e-1055.10EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16007contigEcto-sp13_S_contig16007:2794..3918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score72.4
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D7FP25
Model size273
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
Ec32 ortholog descriptionConserved protein
Ec32 orthologEc-19_004080.1
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462846.0431886-CDS-Ecto-sp13_S_contig16007:2793..28711681462846.0431886-CDS-Ecto-sp13_S_contig16007:2793..2871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16007 2794..2871 -
1681462846.0523713-CDS-Ecto-sp13_S_contig16007:3723..39181681462846.0523713-CDS-Ecto-sp13_S_contig16007:3723..3918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16007 3724..3918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16007.4402.1prot_Ecto-sp13_S_contig16007.4402.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16007 2794..3918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16007.4402.1

>prot_Ecto-sp13_S_contig16007.4402.1 ID=prot_Ecto-sp13_S_contig16007.4402.1|Name=mRNA_Ecto-sp13_S_contig16007.4402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
GHDEFNPPSWPSTCAPENEDWVLMSNSYIGSFGLCGTGTAYPEEFWNCAG
TSAGLPSSSLRRFCHMKAIMTAGRPSLIKAVSPTPGSRTL*
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mRNA from alignment at Ecto-sp13_S_contig16007:2794..3918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16007.4402.1 ID=mRNA_Ecto-sp13_S_contig16007.4402.1|Name=mRNA_Ecto-sp13_S_contig16007.4402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16007:2794..3918- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCACGACGAATTCAACCCTCCCTCGTGGCCAAGCACTTGCGCACCCGA
AAATGAAGACTGGGTTCTCATGTCCAACTCCTACATCGGCTCGTTTGGTC
TCTGTGGAACAGGTACCGCCTACCCGGAAGAGTTCTGGAACTGTGCCGGA
ACGTCCGCTGGTCTACCCTCGTCTTCCCTTCGTCGCTTTTGCCATGTTGG
GTGTGTGTTTGACCGCAAGGTTGTCTCTTTGTTCCTTCTACCTCTCTCGC
GCGCGCGTGCCTCCTCCCGTTTGAGTGAAACGAACAATGATCTTCTCCTT
CTTACCCTTCAACCCTGGCGTGCTTCGACAGCAGAAGCCTTGTGGGCAAC
ATTCCCCCGCCAGCGGCCGGTCGTTAACCTCACCGCCAGTACCCGACAAT
TGTGTTGGGAGCACAGTGCAACGGACCTTTCATGTCGTAAACAAGGGGAA
CGCAGCAATTCCCTACTGACGTGATTCGAGGGCTGGCTGACGACATCAAT
AAACGTTGTGCTCCTCATACGATTGACGTGTTGAGCCTCACATTTTTTTT
CAGCGCCCCCCGCCCCCCTTAACCTCTCGGTGCTCGCCCGCTGTCGCCTA
CATCTTCCCTGCCGCCCTGCTCTCCTATTCGCTGGCATCACTACCAACTT
CAGGTGTCGAGATCACGTTAGGTGGGTGTGTGTTGACCTGGCCCTAATTA
TAACCCTAAGAAAGCTTTTCTACGTTCACAGGCGACGATTCCGGTGTTTG
GTCTATTTGTATTGGCTCTCTTTCCCTACACGTTCGATGATTTCGCCCTT
TCGAGAAAAGGGACGGTGCCGGTAGTATCTTGCGTGCGGCGGTGTCTTCG
TTAGTCGATTGCTTCCGTTGTCATGTTTCACACCCATCCCGTGCAGCGCT
GATGACACGGTACGTTTTGATGCTACTGCTGTACGCCGAGCACCCCTTTT
ACCTGAACACCACCACCAGCCCTCGCGCTCTTCTGCGTTTCGAAAGCCGA
CGAATCAACCGAGGCAGGGGACACACAGACTGAAGACGACTGGGAAGATG
AAGGCGATCATGACGGCCGGTCGACCTTCATTGATCAAGGCCGTTTCCCC
AACACCAGGATCGAGAACATTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16007:2794..3918-

>mRNA_Ecto-sp13_S_contig16007.4402.1 ID=mRNA_Ecto-sp13_S_contig16007.4402.1|Name=mRNA_Ecto-sp13_S_contig16007.4402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16007:2794..3918- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCACGACGAATTCAACCCTCCCTCGTGGCCAAGCACTTGCGCACCCGA
AAATGAAGACTGGGTTCTCATGTCCAACTCCTACATCGGCTCGTTTGGTC
TCTGTGGAACAGGTACCGCCTACCCGGAAGAGTTCTGGAACTGTGCCGGA
ACGTCCGCTGGTCTACCCTCGTCTTCCCTTCGTCGCTTTTGCCATATGAA
GGCGATCATGACGGCCGGTCGACCTTCATTGATCAAGGCCGTTTCCCCAA
CACCAGGATCGAGAACATTATGA
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