mRNA_Ecto-sp13_S_contig15992.4392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15992.4392.1
Unique NamemRNA_Ecto-sp13_S_contig15992.4392.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A6H5JC88_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 4.030e-56
Identity = 106/124 (85.48%), Postives = 111/124 (89.52%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQV-----VKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKLLLQWRNKKRHGKTNSISASNADLGKPAGYNTEQQQTAVDNDG-EGYSGGHGGEAGAEQVV 354
            AGVAYVETKSLDGETNLKIRQV     VKGVVGKLLTP+DCAKLSGRVVMEHPDKLINNFKGKL+LQWRNKKR GKTNSI +SNADLG+PAGYNTEQQQTA DN G EG +GGHG EAGAEQ V
Sbjct:  203 AGVAYVETKSLDGETNLKIRQVLHGRVVKGVVGKLLTPEDCAKLSGRVVMEHPDKLINNFKGKLMLQWRNKKRRGKTNSIPSSNADLGRPAGYNTEQQQTATDNGGREGDNGGHGEEAGAEQAV 326          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.450e-54
Identity = 103/119 (86.55%), Postives = 106/119 (89.08%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKLLLQWRNKKRHGKTNSISASNADLGKPAGYNTEQQQTAVDNDG-EGYSGGHGGEAGAEQVV 354
            AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTP+DCAKLSGRVVMEHPDKLINNFKGKLLLQWRNKKR G TNSI AS ADLGKP  YNTEQQ+ A DNDG EG + GH GEAGAEQ V
Sbjct:  239 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPEDCAKLSGRVVMEHPDKLINNFKGKLLLQWRNKKRRGTTNSIPASIADLGKPVVYNTEQQEAAADNDGGEGDNRGHRGEAGAEQAV 357          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKG 171
            AG+ YVETKSLDGETNLKIRQ ++  +G++ TP+D A L GRVVMEHP+KLI+NF G
Sbjct:  129 AGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSG 185          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKG 171
            AG+ YVETKSLDGETNLKIRQ ++  +G++ TP+D A L GRVVMEHP+KLI+NF G
Sbjct:   12 AGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSG 68          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.620e-16
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKLLL 183
            AG+ YVETKSLDGETNLKIRQV KG+VG +    +   L GRVVMEHP++LINNF G L++
Sbjct:  235 AGICYVETKSLDGETNLKIRQVPKGLVGAVRRSAEAGALRGRVVMEHPNRLINNFAGTLVM 295          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A7S3XHX3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XHX3_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 3.080e-14
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKLLL 183
            AG+ YVETKSLDGETNLKIRQ V  VVG +    D A L G + MEHP+KLI +F G L L
Sbjct:   53 AGICYVETKSLDGETNLKIRQCVVDVVGVVSEESDVALLQGEIEMEHPNKLIESFTGVLEL 113          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: D7FU89_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.330e-11
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKL 177
            +G  YVETKSLDGETNLKIRQV K ++G++   +D    SGR++MEHP+K I +F G L
Sbjct:  190 SGACYVETKSLDGETNLKIRQVQKVLLGRVDGHKDLDSFSGRIIMEHPNKAIASFTGSL 248          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A485KMC3_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMC3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.210e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 GVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGK 174
            G+A++ETKSLDGETNLKIRQ +     +L  P   AKL GRVV EHP+  +N+F G+
Sbjct:  182 GMAFIETKSLDGETNLKIRQALPCTFAQLQDPVSIAKLPGRVVCEHPNHDVNSFSGR 238          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: F0W087_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W087_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.220e-10
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    4 GVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKGKLLLQWRNKKRHGKTNSISASNADL 246
            G+ YVETKSLDGETNLK+RQ V+    ++ + +D AKL G VV E P+ +I+ F G    +  NKK    TN+I+   + L
Sbjct:  284 GICYVETKSLDGETNLKLRQGVELTYTEISSTKDIAKLRGLVVCEQPNNVIHRFHGTYQNESGNKKESLSTNAIALRGSTL 364          
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Match: A0A482SFD1_9ARCH (PhoLip_ATPase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFD1_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 2.780e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    4 GVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDKLINNFKG 171
            G++YVETKSLDGETNLKIR  +   + K+    D A L G V MEHP+KLI++F G
Sbjct:  220 GISYVETKSLDGETNLKIRSALPCTMSKIKNEGDLAMLVGEVEMEHPNKLIDSFNG 275          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15992.4392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC88_9PHAE4.030e-5685.48PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
D7G0C1_ECTSI2.450e-5486.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU18_ECTSI1.160e-1768.42Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE1.160e-1768.42P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
A0A836CFX1_9STRA4.620e-1665.57Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A7S3XHX3_HETAK3.080e-1462.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FU89_ECTSI1.330e-1157.63Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A485KMC3_9STRA2.210e-1056.14Phospholipid-transporting ATPase n=1 Tax=Aphanomyc... [more]
F0W087_9STRA2.220e-1045.68Phospholipid-transporting ATPase n=1 Tax=Albugo la... [more]
A0A482SFD1_9ARCH2.780e-1057.14PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15992contigEcto-sp13_S_contig15992:1750..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score195.3
Seed ortholog evalue1.6e-47
Seed eggNOG ortholog2880.D7G0C1
Model size357
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
Cds size354
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462845.1538265-CDS-Ecto-sp13_S_contig15992:1750..20411681462845.1538265-CDS-Ecto-sp13_S_contig15992:1750..2041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15992 1751..2041 -
1681462845.1641574-CDS-Ecto-sp13_S_contig15992:2658..27211681462845.1641574-CDS-Ecto-sp13_S_contig15992:2658..2721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15992 2659..2721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15992.4392.1prot_Ecto-sp13_S_contig15992.4392.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15992 1751..2721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15992.4392.1

>prot_Ecto-sp13_S_contig15992.4392.1 ID=prot_Ecto-sp13_S_contig15992.4392.1|Name=mRNA_Ecto-sp13_S_contig15992.4392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
AGVAYVETKSLDGETNLKIRQVVKGVVGKLLTPQDCAKLSGRVVMEHPDK
LINNFKGKLLLQWRNKKRHGKTNSISASNADLGKPAGYNTEQQQTAVDND
GEGYSGGHGGEAGAEQVV
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mRNA from alignment at Ecto-sp13_S_contig15992:1750..2721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15992.4392.1 ID=mRNA_Ecto-sp13_S_contig15992.4392.1|Name=mRNA_Ecto-sp13_S_contig15992.4392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15992:1750..2721- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGTGGCGTACGTCGAGACCAAGTCTCTGGATGGGGAGACTAACCT CAAGATTCGGCAGGTGTTACATTGGAGGGTAACGAACGGTAGTCGCTCTA TTACTTATATTTGCTTACCCCGACCGAACAGTGCCAACAGCATTTTCTTA TTCCTCCCACAAATATACAATTTTTCCATAGGGGAAAGACATCGGGACAA AAACGGGGGAACAGGGAACCAAGGCGAAAAGTATATATTCCCCCGTCGAG AATCGGTGATACAAATATCGGAAGTAGAAATGACTCGAAAGCCAACGAGG TTATCTCATTGCAAATTGCAAGTACAGCCCAGACGAAGGGCCTACGTAGA CGTTGGATCCGTTTTCACGGAGCGCGTGCGAGTCTAGCAAATCAAGCAGC AAGCACAGCGCACAACGCGCGGTCTCCACTATTTGTGCGTTCCGATCTGT CGGTGCTCTTCGTATCTCTTCGCTGAAAGGCGTTGTGTTTGTGAGGCAAG GCTGCACGTTATCGGAAACACAGACAAATGGGAACCTGGTGAGTGATGAC ATTTGGAGTGTGGTCAATTGCTCTATCTGGCAAAGCCCAATCGACGAATG TCCGCCGAGGTTTTCGATATTTCCGTTTAGACCGCTCCCGCTCACGTTGG TGATACCCCGACCAAAATGCTCATTGACAGGTGGTGAAGGGTGTGGTAGG AAAGCTGCTCACCCCTCAGGACTGCGCCAAGCTGTCCGGCCGCGTGGTCA TGGAGCACCCGGACAAGCTCATCAACAATTTTAAGGGCAAGCTTCTGCTC CAGTGGCGCAACAAGAAGCGCCACGGCAAGACCAACAGCATCTCGGCATC CAACGCCGACCTAGGCAAGCCCGCTGGTTACAACACCGAGCAGCAGCAGA CCGCCGTCGATAACGATGGCGAAGGCTACAGCGGAGGTCACGGGGGAGAA GCGGGAGCAGAGCAGGTGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15992:1750..2721-

>mRNA_Ecto-sp13_S_contig15992.4392.1 ID=mRNA_Ecto-sp13_S_contig15992.4392.1|Name=mRNA_Ecto-sp13_S_contig15992.4392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15992:1750..2721- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGTGGCGTACGTCGAGACCAAGTCTCTGGATGGGGAGACTAACCT
CAAGATTCGGCAGGTGGTGAAGGGTGTGGTAGGAAAGCTGCTCACCCCTC
AGGACTGCGCCAAGCTGTCCGGCCGCGTGGTCATGGAGCACCCGGACAAG
CTCATCAACAATTTTAAGGGCAAGCTTCTGCTCCAGTGGCGCAACAAGAA
GCGCCACGGCAAGACCAACAGCATCTCGGCATCCAACGCCGACCTAGGCA
AGCCCGCTGGTTACAACACCGAGCAGCAGCAGACCGCCGTCGATAACGAT
GGCGAAGGCTACAGCGGAGGTCACGGGGGAGAAGCGGGAGCAGAGCAGGT
GGTG
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