mRNA_Ecto-sp13_S_contig1595.4366.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE) HSP 1 Score: 191 bits (485), Expect = 4.170e-57 Identity = 97/116 (83.62%), Postives = 97/116 (83.62%), Query Frame = 1
Query: 1 INWGSVRRAVSGGAGRLRREARALGIFGGXXXXXXXXXXXX--ADAAPAAEAA-AEVVLTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWSQPR 339
INWG VRRAVSGGAGRLRREARA GIFGG AD APAAEAA AEVVLTACAECG NPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWSQPR
Sbjct: 318 INWGFVRRAVSGGAGRLRREARAFGIFGGSSGGAGRVSARGLGADTAPAAEAAVAEVVLTACAECGANPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWSQPR 433
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.710e-16 Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 1
Query: 1 INWGSVRRAVSGGAGRLRREARALGIFGGXXXXXXXXXXXXADAAPAAEAAAEVVLTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRW 327
++W +RR VSG L R+ RA G XX A E C CG A+TPYVT CGH++CYYC + AC D ++CPRCG +FATSRRW
Sbjct: 336 VDWDGLRRQVSG----LIRQRRAGAWAAGAGXXGGSEFRGAGGADGDME---------CVVCGEESAQTPYVTDCGHIYCYYCLKTACLQDDSFSCPRCGTFFATSRRW 431
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A1W0A7A5_9STRA (Peroxin-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7A5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.050e-15 Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 166 LTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRR 324
LTACA C V PAKTPY+T CGH +CY+C + A +DP Y C CGE F +S R
Sbjct: 260 LTACALCSVTPAKTPYITSCGHQYCYFCLQTAVAMDPNYTCAMCGEVFESSER 312
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A1V9ZKW2_9STRA (Peroxin-2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKW2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.090e-13 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 166 LTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRR 324
L C CG++PAKTPY+T CGH +CY+C + A DP YAC CG+ F +S R
Sbjct: 260 LAPCTICGISPAKTPYITSCGHQYCYFCLQTAVATDPTYACATCGDTFESSER 312
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: UPI00064503DB (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064503DB) HSP 1 Score: 70.9 bits (172), Expect = 4.650e-12 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 127 DAAPAAEAAAEVVLTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWS 330
DAA A + A +VL C C +P PY+T CGH+FCYYC + C +DP + CPRC + +R++
Sbjct: 269 DAALAPQLLAPLVLEKCPICFNDPISVPYITDCGHLFCYYCIKTNCMIDPTFTCPRCNSIVSNMKRFT 336
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A067C940_SAPPC (Peroxin-2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C940_SAPPC) HSP 1 Score: 68.9 bits (167), Expect = 1.970e-11 Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1
Query: 175 CAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWS 330
CA C PAKTPY+T CGH +CYYC + A DP + C CG+ F S R S
Sbjct: 263 CALCNATPAKTPYITTCGHQYCYYCLQTAVATDPTFVCATCGDVFDASERLS 314
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A485KU83_9STRA (Peroxin-2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU83_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.590e-8 Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 154 AEVVLTACAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWSQPR 339
A + C C +PAKTPY T CGHV+CYYC + A + + + C CG+ F +S+R R
Sbjct: 256 ARALQNGCPICLTSPAKTPYKTSCGHVYCYYCLQSAVSSNADFVCVVCGDLFESSQRLGNDR 317
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: A0A507DDU9_9FUNG (Peroxin-2 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DDU9_9FUNG) HSP 1 Score: 60.8 bits (146), Expect = 1.730e-8 Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1
Query: 205 TPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFAT 315
TPY +GCGHV+CYYC + A DPR+ CPRCGE +
Sbjct: 325 TPYKSGCGHVYCYYCVKSAMMADPRFPCPRCGEVITS 361
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: W4GX78_9STRA (Peroxin-2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GX78_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.050e-8 Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query: 175 CAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRR 324
C C PAKTPY T CGH++CY+C + + P +AC CG+ F TS R
Sbjct: 265 CPICLAVPAKTPYQTSCGHIYCYFCLQSSVAAHPDFACVVCGDRFDTSHR 314
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Match: L8HGF4_ACACA (Pex2 / Pex12 amino terminal regioncontaining protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGF4_ACACA) HSP 1 Score: 59.3 bits (142), Expect = 5.730e-8 Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1
Query: 175 CAECGVNPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGE 303
C C +PA +PY++ CGH+FCYYC + A VD YACP C
Sbjct: 272 CGVCQADPAHSPYLSDCGHLFCYYCIKTAMMVDRSYACPSCNH 314 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1595.4366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1595.4366.1 >prot_Ecto-sp13_S_contig1595.4366.1 ID=prot_Ecto-sp13_S_contig1595.4366.1|Name=mRNA_Ecto-sp13_S_contig1595.4366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp INWGSVRRAVSGGAGRLRREARALGIFGGSGSGRASARGLGADAAPAAEAback to top mRNA from alignment at Ecto-sp13_S_contig1595:14788..16480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1595.4366.1 ID=mRNA_Ecto-sp13_S_contig1595.4366.1|Name=mRNA_Ecto-sp13_S_contig1595.4366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1595:14788..16480- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1595:14788..16480- >mRNA_Ecto-sp13_S_contig1595.4366.1 ID=mRNA_Ecto-sp13_S_contig1595.4366.1|Name=mRNA_Ecto-sp13_S_contig1595.4366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1595:14788..16480- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |