mRNA_Ecto-sp13_S_contig15940.4362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15940.4362.1
Unique NamemRNA_Ecto-sp13_S_contig15940.4362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 7.400e-53
Identity = 124/150 (82.67%), Postives = 132/150 (88.00%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEEEEHRQLTEDVPKWQAQEKWRNXXXXXXXXXXXXKTKKDDDXXXXXXXXXXXXXYEDSPDEEGCLDGCEYTSKDGTKGRVCDSNCS 450
            CRACYNDVEKARKQDTP NRAIMCSTKMPVDVYDRRLT+  ES+PLLVARDLE +Q+DAS PS EE HRQLTEDVPKW+ QEKW+ XXXXXXXXXXXX  + DD  XXXXXXXXXXXX   S DEEGCLDGCEYTSKDGT+GRVCDSNCS
Sbjct:  409 CRACYNDVEKARKQDTPANRAIMCSTKMPVDVYDRRLTAV-ESDPLLVARDLEVLQKDASSPSVEE-HRQLTEDVPKWKEQEKWKXXXXXXXXXXXXXXXETDDGVXXXXXXXXXXXXXXXSSDEEGCLDGCEYTSKDGTRGRVCDSNCS 556
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 3.720e-52
Identity = 108/150 (72.00%), Postives = 116/150 (77.33%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEEEEHRQLTEDVPKWQAQEKWRNXXXXXXXXXXXXKTKKDDDXXXXXXXXXXXXXYEDSPDEEGCLDGCEYTSKDGTKGRVCDSNCS 450
            CRACYND EKARKQDTPGNRAIMCSTKMPVDVY RRLT   ESNPLLVARDLEA+Q+D       EEHRQL+EDVPKW+AQEKW+N  XXXXXXXXXX  +                 YEDS DEEGC+DGCEYTSKDGT+GRVCDSNCS
Sbjct: 1289 CRACYNDDEKARKQDTPGNRAIMCSTKMPVDVYGRRLTPADESNPLLVARDLEALQKD-------EEHRQLSEDVPKWRAQEKWKNNTXXXXXXXXXXXKQ-----------------YEDSSDEEGCMDGCEYTSKDGTRGRVCDSNCS 1414
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 4.790e-40
Identity = 97/163 (59.51%), Postives = 110/163 (67.48%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEEEEHRQLTEDVPKWQAQEKWRNXXXXXXXXXXXXKTKKDDDXXXXXXXXXXXXXYEDSPDEE-------------GCLDGCEYTSKDGTKGRVCDSNCS 450
            CRAC+NDV+KARKQDTP NR+IMCSTK PV+ Y RRLT+D ES+PL VARDLE +QEDAS PS EEEHRQL+   PKW++QEKWR              T KDD XXXXXXXXXXXXX                      C   CEYTS+DGT+GRVCD+NCS
Sbjct:  413 CRACFNDVDKARKQDTPENRSIMCSTKRPVEGYGRRLTADDESDPLRVARDLETLQEDASSPSGEEEHRQLSGSTPKWKSQEKWR--------------TSKDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACSSSCEYTSRDGTRGRVCDANCS 561
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.450e-31
Identity = 99/165 (60.00%), Postives = 113/165 (68.48%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEE-------EEHRQLTEDVPKWQAQEKWR---NXXXXXXXXXXXXKTKKDDDXXXXXXXXXXXXXYEDSPDEE-----GCLDGCEYTSKDGTKGRVCDSNCS 450
            CR CYN+V++A KQD+P NRAIMCST  PVDVY RR+++  ES P  VAR LEA+ E+AS PSEE        + R+LT  VPKW+A EKWR   +  XXXXXXXXXX   K     XXXXXXXXXXX  DS D+      GC   C YTSKDGTKGRVCDSNCS
Sbjct:  424 CRVCYNNVDRALKQDSPDNRAIMCSTVKPVDVYRRRMSAADESEPSRVARSLEALNEEASSPSEEVQSAVKVNQDRKLTS-VPKWKANEKWRTANDDGXXXXXXXXXXXXNKXXXSEXXXXXXXXXXXRNDSSDDSSSSDPGCSSRCTYTSKDGTKGRVCDSNCS 587
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.870e-28
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    4 RACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEEEEHRQLTEDVPKWQAQEKWR 255
            RAC+NDV+KAR+QDTP NRAIMCSTK PV+ Y RRLT D ES+PL +AR LE +QED S P +E+EHRQL+   PK ++QEKWR
Sbjct:  343 RACFNDVDKAREQDTPENRAIMCSTKRPVEGYGRRLTPDDESDPLRIARSLETLQEDTSSPLQEQEHRQLSGSTPKRRSQEKWR 426
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.790e-27
Identity = 95/171 (55.56%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIM------CSTKMPVDVYDRRLTSDGESNPLLVARDLEAMQEDASFPSEE-------EEHRQLTEDVPKWQAQEKWR---NXXXXXXXXXXXXKTKKDDDXXXXXXXXXXXXXYEDSPDEE-----GCLDGCEYTSKDGTKGRVCDSNCS 450
            CR CYN V+KA KQD+P NRAIM      CST MPVDVY RR+++  E     VAR L A++EDAS P+EE       ++ R+LT  VP+W+A+EKWR   +   XXXXXXXXX   K     XXXXXXXXXXX   S D+      GC   C YTSKDGTKGRVCDSNCS
Sbjct:  274 CRVCYNSVDKALKQDSPDNRAIMYDAVVVCSTVMPVDVYHRRMSAADEGEASRVARRLAALKEDASSPAEEVELAVKVDQDRKLTS-VPRWKAKEKWRTANDDGIXXXXXXXXXXXXKXXGGEXXXXXXXXXXXXNGSSDDSSSSDPGCSSRCTYTSKDGTKGRVCDSNCS 443
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.690e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVARDLE 159
            CRACYND ++A KQDTPGNRAIMCST MPVDV    L+ D E   L + + +E
Sbjct:  350 CRACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAME 402
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BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.040e-5
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:  382 CLDGCEYTSKDGTKGRVCDSNCS 450
            CLDGCEYTSKDGT+GRVCD+NCS
Sbjct:  249 CLDGCEYTSKDGTRGRVCDANCS 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15940.4362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5LJP6_9PHAE7.400e-5382.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI37_ECTSI3.720e-5272.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI63_ECTSI4.790e-4059.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI39_ECTSI1.450e-3160.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHL7_9PHAE5.870e-2866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4M7_9PHAE3.790e-2755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L131_9PHAE3.690e-1160.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI38_ECTSI7.040e-591.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15940contigEcto-sp13_S_contig15940:1447..3408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score187.6
Seed ortholog evalue4.3e-45
Seed eggNOG ortholog2880.D7FI37
Model size452
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2D0G2@1,2SE3H@2759
Cds size450
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462842.6881077-CDS-Ecto-sp13_S_contig15940:1446..15141681462842.6881077-CDS-Ecto-sp13_S_contig15940:1446..1514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15940 1447..1514 +
1681462842.7042263-CDS-Ecto-sp13_S_contig15940:1806..20101681462842.7042263-CDS-Ecto-sp13_S_contig15940:1806..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15940 1807..2010 +
1681462842.7148585-CDS-Ecto-sp13_S_contig15940:2815..29231681462842.7148585-CDS-Ecto-sp13_S_contig15940:2815..2923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15940 2816..2923 +
1681462842.7237546-CDS-Ecto-sp13_S_contig15940:3336..34061681462842.7237546-CDS-Ecto-sp13_S_contig15940:3336..3406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15940 3337..3406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15940.4362.1prot_Ecto-sp13_S_contig15940.4362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15940 1447..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15940.4362.1

>prot_Ecto-sp13_S_contig15940.4362.1 ID=prot_Ecto-sp13_S_contig15940.4362.1|Name=mRNA_Ecto-sp13_S_contig15940.4362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
CRACYNDVEKARKQDTPGNRAIMCSTKMPVDVYDRRLTSDGESNPLLVAR
DLEAMQEDASFPSEEEEHRQLTEDVPKWQAQEKWRNNTVPKWKRNQKWKT
KKDDDIPKWRANQKWKKQYEDSPDEEGCLDGCEYTSKDGTKGRVCDSNCS
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mRNA from alignment at Ecto-sp13_S_contig15940:1447..3408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15940.4362.1 ID=mRNA_Ecto-sp13_S_contig15940.4362.1|Name=mRNA_Ecto-sp13_S_contig15940.4362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1962bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15940:1447..3408+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGCGCTTGCTACAACGACGTCGAGAAGGCCCGCAAGCAGGACACGCC
CGGCAACCGCGCGATCATGTGAGAATCATGGTGACATGCATGGCGTGGTA
GTGTACCTTAAGGCCGCAGATATTTGTATGAAAGGTGTCCAATGCGTTCG
GCGATTGTCATTGCGAACATGACCGCCTTCGACAAAATAAGCCCAATTGC
TTGGTCTATATATCCCGCCTTGCACACGTGATCTTATCGTCACCGCGGTT
CCATGGCACATCGAGCGATAGTTCTCGATTTTCGTAATTGCCGCGGGAAC
CTACCTTAACCATGCCAAAAACGCACCCACCGTTGTCGCCCTCTTGATTT
CGCTCGACAGGTGCTCGACCAAGATGCCGGTGGACGTTTACGACCGCCGC
CTGACATCCGACGGCGAGAGCAACCCGCTGCTTGTCGCGCGTGATCTCGA
GGCTATGCAGGAGGACGCATCATTCCCGTCGGAGGAAGAGGAGCACCGCC
AGCTGACGGAGGATGTGCCCAAGTGGCAGGCGCAGGAGAAGTGGAGGAAC
AACACCGTCCCCAAGTGCGTACCACATCCGGCTGTGATTGTAGGATGGAA
ATCGTCCCTTCACATTTCTTCGACAACAAAGGGCGTGTGTTTCGCTTTAG
GCGGCTCCTCCACCACCCTTGAGCCACATCGCACGATATTGCTGGACAGC
CGCTGGTCGTGATGTTTGCAACATGTCCGGTTACTTGCGATTAATGTTCT
ATTTTAGGGCAACCCCCAATGGTGTTGACTCGGTCGAGTAGTGACGCCTG
ATGAGTTATTTTTTCTGTCGTAAGGTAACCTCCGATGGGGTTGGCTCGGT
CGACTTGTGTTCCATGAATGAACGGTATCTTTCGAAAGATTATTGCGGAA
AGAAAAGTGGGGTCAAAAGCGCACACAAACGACGCCCACACCTCGACCAA
AGCAGCTTAGGAACACGCGTGACGAAACGAGGCCAGTATTTTGAAAGCTG
CGTCTTTCGGCGTATAAGTGCAACACCGCAGTCGTGTAGCGTTGCCGAGG
CTTGTGAAGTGTGTCAAAGAGGGCGCTTCCCGGTAGGATAACTTGCTCGA
GGCCGAGGTGATGAGCAACTGCAATTTGGAGGTTTTGGTTCAGGAAATCA
AATAGCACCAGATGGTTGGGACGAGGCCTTTGGCGTCGGAACGTTCTTCA
GATTCCGGAAAGTTCCGCTCGACATAAACAGCTGCAATCGACCAACGTGG
TTTTAGGGCCCCTTGGCAACCAGGTGTGATATGAGCCTTCATGGCGTGTT
CCTGTCCCTTGGCTCGTTGGTCATGCTGCCCTATGTGTGCGTATGACAAT
GGGTCCCGCTATGTGACAGGTGGAAGCGCAACCAAAAGTGGAAGACGAAG
AAGGACGACGATATCCCCAAGTGGCGCGCCAACCAGAAGTGGAAGAAGCA
GTATGAGGATTCTCCGGATGAGGAAGGGTGAGTGATCTCGACGTCTCGTG
TTGCAAGCATATTGGACGAAAGTGGGAATTTTAGGGAATTGTGTCGTTGC
AGCGATGGTTGCGGTCGTAGTAAGTGGGAATTGTTATCACAAGACGAGAC
TAACAAAACCTGTGAGTTGAAGGCGGAGAGAACCTCGAAGATGGAACTCT
CGATATTTATTGAGCCTGTGACGTCAGCCATAGCATGTTTCGCCCAACGC
CTGTGTGGTTGGTTTTCAATTTGAAATTGTTTTCCACGACTTTTTTGAAG
CCGTCGATATTTTCATTGATTCGAGGTGTACGGACAGCAGTTTACATTTG
TTACTTCCACTAGGCAAGCCCAGCTCCGTCGAAAACCATTTTTGAAGGGG
CTCCCTTCCCACCCAACTTACTCCTGGCGACACCCAACAGGTGCTTGGAC
GGGTGCGAGTACACTAGCAAGGACGGCACCAAGGGACGCGTGTGCGACTC
GAACTGCTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15940:1447..3408+

>mRNA_Ecto-sp13_S_contig15940.4362.1 ID=mRNA_Ecto-sp13_S_contig15940.4362.1|Name=mRNA_Ecto-sp13_S_contig15940.4362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15940:1447..3408+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGCGCTTGCTACAACGACGTCGAGAAGGCCCGCAAGCAGGACACGCC
CGGCAACCGCGCGATCATGTGCTCGACCAAGATGCCGGTGGACGTTTACG
ACCGCCGCCTGACATCCGACGGCGAGAGCAACCCGCTGCTTGTCGCGCGT
GATCTCGAGGCTATGCAGGAGGACGCATCATTCCCGTCGGAGGAAGAGGA
GCACCGCCAGCTGACGGAGGATGTGCCCAAGTGGCAGGCGCAGGAGAAGT
GGAGGAACAACACCGTCCCCAAGTGGAAGCGCAACCAAAAGTGGAAGACG
AAGAAGGACGACGATATCCCCAAGTGGCGCGCCAACCAGAAGTGGAAGAA
GCAGTATGAGGATTCTCCGGATGAGGAAGGGTGCTTGGACGGGTGCGAGT
ACACTAGCAAGGACGGCACCAAGGGACGCGTGTGCGACTCGAACTGCTCC
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