mRNA_Ecto-sp13_S_contig15909.4337.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15909.4337.1
Unique NamemRNA_Ecto-sp13_S_contig15909.4337.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15909.4337.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.300e-20
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   19 QVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGVKEGNGRIF 162
            +VEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVG KEGNGRIF
Sbjct:  263 KVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGAKEGNGRIF 310
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15909.4337.1 vs. uniprot
Match: A0A835YV71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV71_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-10
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 QVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGVK 141
            +VEDCID TLEPRPV YGA RRMARRFDE LIVE+E V V+
Sbjct:  221 KVEDCIDETLEPRPVSYGAKRRMARRFDEALIVEIEPVAVR 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15909.4337.1 vs. uniprot
Match: A0A4D9CY48_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY48_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.510e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   25 EDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMV 132
            EDC+D+T  P P  Y A RRM RRFDE+LIVEVE+V
Sbjct:  179 EDCLDMTRIPSPTSYAAKRRMGRRFDESLIVEVEVV 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15909.4337.1 vs. uniprot
Match: I2CRD0_NANGC (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRD0_NANGC)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   25 EDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMV 132
            EDC+D+T  P P  Y A RRM RRFDE+LIVEVE+V
Sbjct:  269 EDCLDMTRIPSPTSYAAKRRMGRRFDESLIVEVEVV 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15909.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4V1_ECTSI2.300e-2095.83Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A835YV71_9STRA3.820e-1078.05Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A4D9CY48_9STRA1.510e-566.67Peptidylprolyl isomerase n=1 Tax=Nannochloropsis s... [more]
I2CRD0_NANGC3.290e-566.67Peptidylprolyl isomerase n=1 Tax=Nannochloropsis g... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15909contigEcto-sp13_S_contig15909:149..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score97.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D7G4V1
Model size1135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Cds size165
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.6230514-CDS-Ecto-sp13_S_contig15909:148..3131681462840.6230514-CDS-Ecto-sp13_S_contig15909:148..313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15909 149..313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462840.6385472-UTR-Ecto-sp13_S_contig15909:313..12831681462840.6385472-UTR-Ecto-sp13_S_contig15909:313..1283Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15909 314..1283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15909.4337.1prot_Ecto-sp13_S_contig15909.4337.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15909 149..313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15909.4337.1

>prot_Ecto-sp13_S_contig15909.4337.1 ID=prot_Ecto-sp13_S_contig15909.4337.1|Name=mRNA_Ecto-sp13_S_contig15909.4337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
PPPPPLQVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGVKEGN
GRIF*
back to top

mRNA from alignment at Ecto-sp13_S_contig15909:149..1283+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15909.4337.1 ID=mRNA_Ecto-sp13_S_contig15909.4337.1|Name=mRNA_Ecto-sp13_S_contig15909.4337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15909:149..1283+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCCCCCCCCCCTTCAGGTGGAAGACTGCATCGATCTCACACTTGA
GCCCAGGCCGGTAGGCTACGGCGCAACGCGGCGAATGGCCCGTCGCTTCG
ACGAGACCCTAATCGTAGAGGTGGAGATGGTTGGGGTCAAGGAAGGAAAC
GGAAGAATATTCTGAGGAATTAGTGTGTGATGATCCGTCAGTCTTTCCGG
GTGTGCTTGGGCCGGCGAGGGACGATGATGAAAGAAGCAGCGAAAACGGA
GCTCCTAGAAGCAACAACTGCGTTCCATAATCGCGTTTGTCGTGATTTGG
CTGGGCCCTTTTCCATCCGTTTTTTGTTTTTCGAAGTATGCGTTCTTTGT
TGGGTATGTTAGTTGGCATGTGACCGCGAAACGCGTCCGCGTCAGTTGGG
TCGGGTGTGTACTTGTACTGACAGGAACGGTGTTTATTGCGAAGACAACA
AGTCGTCTCAGGTTTCCTTGGATCCCTAGACATTTTCCTGCAAGAGGTGT
CAATAGCCTCTGAGAGAAAGGAGTGATGTGGGGATCAAATGTGACACACG
CCGTCGAAGCTGGGCTCACGACTAGGAGTGAATGCTGTTGGTTGGCAGGA
GAGAATGCTCATACCAAGGCCGTGTATTGAGATTGGTCATTGCGAACGTG
CCAATAAAATCTAGGATTTTGCGAGACCGCTTTATCAGAAGTTCTAGGCT
GGGGCTTGGGAAACGTATTGGGTTAGGTAGACCGATAGCCAGAGGCAGGG
GGGTGGGGAGGGGGCAAGACCGGGTTGTTAAGAGTATGTCTACCGTAGAG
TAGGTGCAATTAGGCGGAATTAGTTAATTAGACTACGTCTAGATTTGTCT
GGGGGGCGAGGAGAAACTGCGATCGATCCTGTTCAGCAGTGGAATTTTCG
ACCATGAGAGGAAGGTTGATTCAACCCCTGGCAACAGACCTTGGAGACTA
GATTCAGCGCTAGGTTATTGCCTACAGTAGTGTGGAGATGCTGGGATGGA
ATTGTGATACATCTTTGCCACCCGCTGTTCGGAGCTTCAAGCGCATGTAA
CCTGTGAGATGCATTCCTGCAGGTTAAGCTTAGCGAATGCGCGAGAGTAT
GTACAACACGCGTAGCTCTGCCCCTTGAACCGATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15909:149..1283+

>mRNA_Ecto-sp13_S_contig15909.4337.1 ID=mRNA_Ecto-sp13_S_contig15909.4337.1|Name=mRNA_Ecto-sp13_S_contig15909.4337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15909:149..1283+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCCCCCCCCCCTTCAGGTGGAAGACTGCATCGATCTCACACTTGA
GCCCAGGCCGGTAGGCTACGGCGCAACGCGGCGAATGGCCCGTCGCTTCG
ACGAGACCCTAATCGTAGAGGTGGAGATGGTTGGGGTCAAGGAAGGAAAC
GGAAGAATATTCTGA
back to top