mRNA_Ecto-sp13_S_contig15871.4313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15871.4313.1
Unique NamemRNA_Ecto-sp13_S_contig15871.4313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.650e-68
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 342
            VMGGVSESGLRVVPGAGETDA   SGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK
Sbjct:  314 VMGGVSESGLRVVPGAGETDAKSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 427          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: D8LL63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 8.370e-67
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTLK 342
            VMGGVSESGL VVPGAGETD S  SGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLS YDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEW+DVDIPF+TLK
Sbjct:  131 VMGGVSESGLGVVPGAGETDVSSSSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSEYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWIDVDIPFTTLK 244          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A0G4FWF9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC)

HSP 1 Score: 137 bits (344), Expect = 8.750e-36
Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFS 333
            VMGGVSES +++ PGA E  T A++       AAVFSGEVKT+N GGFVS+RTR   PPLDLSAY+ LRLR+KGDG+RYK  I D+ GW+S +W   FDTVK EW+ VD+PFS
Sbjct:  187 VMGGVSESNIKLEPGAAEPNTGATV-------AAVFSGEVKTANFGGFVSVRTRKFDPPLDLSAYEGLRLRIKGDGSRYKMQIRDNAGWDSPSWGMGFDTVKDEWVTVDLPFS 292          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A835ZH41_9STRA (Complex I intermediate-associated protein 30-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH41_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.120e-34
Identity = 67/113 (59.29%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
            VMGGVS S L VVPG GE       G  ++AAVF G V  +N+GGF S+R+RNASPP D S +DALRLRVKGDG RYKF++YD+ GW+  +W  +FDT  GEW DV  PFS L
Sbjct:  238 VMGGVSTSELVVVPGEGEA------GGRSSAAVFRGTVSPANNGGFASVRSRNASPPWDWSQFDALRLRVKGDGFRYKFTVYDAAGWDRPSWSYSFDTAAGEWADVTFPFSAL 344          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A7S2UWN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.080e-33
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPF 330
            VMGG+S+S L VVPGAGE  T + I       AAVFSGEV T N+GGF S+RTRN  PPLDLS++D + +R+KGDGNRYK  + D   W+  +WC +FDT  G+WMDV IPF
Sbjct:  189 VMGGISKSSLSVVPGAGEEATGSRI-------AAVFSGEVSTDNNGGFASVRTRNLDPPLDLSSFDGIEMRLKGDGNRYKLMLRDETRWDGISWCYSFDTEAGKWMDVRIPF 293          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A7S4DIU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIU2_HETAK)

HSP 1 Score: 124 bits (311), Expect = 7.490e-33
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGE--TDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIP 327
            VMGGVSES L++VPGA E  T A +       AAVFSG VKT+N+GGF S+RTRN +P L+LS    LRLRVKGDGNRYKF + D PGW+S  +  +FDTV GEW+ VD P
Sbjct:   95 VMGGVSESSLQLVPGAAEEPTGARL-------AAVFSGVVKTANNGGFASVRTRNFTPRLNLSGAQGLRLRVKGDGNRYKFILRDDPGWDSANFGFSFDTVAGEWITVDAP 198          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: UPI0019B55518 (CIA30 family protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=UPI0019B55518)

HSP 1 Score: 119 bits (298), Expect = 2.630e-31
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
            VMGGVS+SG+++  GA               AVFSG V T+NSGGF SIRTRN  P +DLSA+  + LR+KGDGNRYKF + D  GW++  +  +FDTV GEW+ V IPF+ L
Sbjct:   69 VMGGVSDSGIQLENGA---------------AVFSGNVSTANSGGFASIRTRNFDPAIDLSAFTGIELRIKGDGNRYKFLVRDDDGWDTVGYSHSFDTVSGEWITVQIPFAQL 166          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A0S3TYT0_9CYAN (CIA30 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A0S3TYT0_9CYAN)

HSP 1 Score: 118 bits (295), Expect = 7.250e-31
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
            VMGGVS+SG+R+  GA               AVFSG V T+NSGGF SIRTRN  P +DLS +  + LRVKGDGNRYKF + D  GW+S  +  +FDTV  EW+ V IPFS L
Sbjct:   69 VMGGVSDSGVRLENGA---------------AVFSGNVSTANSGGFASIRTRNFEPAIDLSNFTGIELRVKGDGNRYKFLVRDGDGWDSVGYSHSFDTVANEWITVQIPFSEL 166          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: A0A1Z4JIV9_LEPBY (CIA30 domain-containing protein n=2 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JIV9_LEPBY)

HSP 1 Score: 115 bits (289), Expect = 5.100e-30
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFS 333
            VMGGVS SG+R+  G                AVF+G V   NSGGF S+RTRN  PPLDLS    + LR+KGDGNRYKF I DS GW+S  +  +FDTV GEWM + IPF+
Sbjct:   64 VMGGVSNSGIRLEGGV---------------AVFTGNVSIENSGGFASVRTRNFDPPLDLSNRSGVELRIKGDGNRYKFLIRDSDGWDSTGYSYSFDTVAGEWMTIQIPFA 159          
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Match: K9S7G1_9CYAN (NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S7G1_9CYAN)

HSP 1 Score: 118 bits (295), Expect = 1.940e-29
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 VMGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRTRNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKGEWMDVDIPFSTL 339
            VMGGVSESGLR+ P +               A F+G V T+NSGGF S+RTRN  PPL+LS YD + LRV+GDG RYKF +    GW+S A+C +FDTV G+W +V +PF  L
Sbjct:  178 VMGGVSESGLRLGPNS---------------AFFTGVVSTANSGGFASVRTRNFEPPLNLSPYDGVALRVRGDGQRYKFMLRTEGGWDSVAYCASFDTVAGQWCEVRLPFREL 275          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15871.4313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW5_9PHAE6.650e-6897.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL63_ECTSI8.370e-6793.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4FWF9_VITBC8.750e-3661.95Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835ZH41_9STRA1.120e-3459.29Complex I intermediate-associated protein 30-domai... [more]
A0A7S2UWN3_9STRA1.080e-3358.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DIU2_HETAK7.490e-3360.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0019B555182.630e-3152.21CIA30 family protein n=3 Tax=Cyanobacteria TaxID=1... [more]
A0A0S3TYT0_9CYAN7.250e-3153.98CIA30 domain-containing protein n=2 Tax=Pseudanaba... [more]
A0A1Z4JIV9_LEPBY5.100e-3053.15CIA30 domain-containing protein n=2 Tax=Leptolyngb... [more]
K9S7G1_9CYAN1.940e-2952.21NADH:ubiquinone oxidoreductase complex I intermedi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15871contigEcto-sp13_S_contig15871:504..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score215.3
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D8LL63
Model size345
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Cds size342
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.678883-UTR-Ecto-sp13_S_contig15871:503..5061681462838.678883-UTR-Ecto-sp13_S_contig15871:503..506Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15871 504..506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462838.6936119-CDS-Ecto-sp13_S_contig15871:506..7451681462838.6936119-CDS-Ecto-sp13_S_contig15871:506..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15871 507..745 +
1681462838.7043161-CDS-Ecto-sp13_S_contig15871:1174..12771681462838.7043161-CDS-Ecto-sp13_S_contig15871:1174..1277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15871 1175..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15871.4313.1prot_Ecto-sp13_S_contig15871.4313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15871 507..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15871.4313.1

>prot_Ecto-sp13_S_contig15871.4313.1 ID=prot_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MGGVSESGLRVVPGAGETDASIGSGSPAAAAVFSGEVKTSNSGGFVSIRT
RNASPPLDLSAYDALRLRVKGDGNRYKFSIYDSPGWNSKAWCDTFDTVKG
EWMDVDIPFSTLK*
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mRNA from alignment at Ecto-sp13_S_contig15871:504..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15871.4313.1 ID=mRNA_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15871:504..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTATGGGGGGCGTCAGCGAGAGCGGCCTTCGGGTCGTTCCAGGAGCCGG GGAAACCGATGCCAGCATCGGTAGCGGATCGCCCGCTGCGGCGGCCGTCT TCTCAGGAGAGGTCAAGACCTCTAACTCCGGAGGGTTTGTGTCCATTCGC ACCCGGAATGCGTCGCCGCCGCTGGATCTGTCGGCATACGATGCCCTGAG GCTGAGGGTCAAGGGGGACGGCAACCGGTACAAGTTCAGCATGTGAGAGG GGGGGGGTCGATGGTGTTTGTGCGGCGGCTGGCTTTTTGTTGTGGTTTGC TGGTTTGGTGATGTGTCGGCCCTTCGGTTCGGGTGTTTTGTCAAGATTCA ACGGGAGGTGATGATGTACACCAAAAAGACGCTGTTTCTAAATGTCTTGG AATTTGTGAAAGATTCGGCAAATCTTCGCCAAAAAAACATCACGCATGAG AGAGCACGCGGATCCTTTCAGTTCAACACCACTTCGCAAGCACACACCTG TGTACCGTTAACGTCGACCTTTACGCCAACCTGCGTCTTCCCTTTCTCCA AACCCCATTTCTGCATTTGTTTCGTCCATCTTCCGCTCTGCTCGTGTTGT GTGGCGACCTGACGGGCCGTCTGTTTGCTGATATATTCCATCTATTGTGT GGTGTGTACCACGGCATGCAGCTACGACTCCCCCGGTTGGAACAGCAAGG CGTGGTGCGACACCTTCGACACCGTAAAGGGCGAGTGGATGGACGTCGAC ATCCCCTTCAGCACCCTCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15871:504..1277+

>mRNA_Ecto-sp13_S_contig15871.4313.1 ID=mRNA_Ecto-sp13_S_contig15871.4313.1|Name=mRNA_Ecto-sp13_S_contig15871.4313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15871:504..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGCGTCAGCGAGAGCGGCCTTCGGGTCGTTCCAGGAGCCGGGGA
AACCGATGCCAGCATCGGTAGCGGATCGCCCGCTGCGGCGGCCGTCTTCT
CAGGAGAGGTCAAGACCTCTAACTCCGGAGGGTTTGTGTCCATTCGCACC
CGGAATGCGTCGCCGCCGCTGGATCTGTCGGCATACGATGCCCTGAGGCT
GAGGGTCAAGGGGGACGGCAACCGGTACAAGTTCAGCATCTACGACTCCC
CCGGTTGGAACAGCAAGGCGTGGTGCGACACCTTCGACACCGTAAAGGGC
GAGTGGATGGACGTCGACATCCCCTTCAGCACCCTCAAGTGA
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