mRNA_Ecto-sp13_S_contig15852.4304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: D8LKB4_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB4_ECTSI) HSP 1 Score: 358 bits (918), Expect = 5.340e-123 Identity = 225/234 (96.15%), Postives = 226/234 (96.58%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKKGEAGGDMMEEPDADDGETDGAGAGAGDDAQGGGDRVVNAAGSADAQRQQQSGAVPGGGEAGAIATPTGMNVERQELQSGLQGQQPXXXXXXXXASAGLAPMDEDGGSHAAPAXXXXXXXXXXXXEGGVVG 702
ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKKGEAGGDMMEEP+ADDGETDGAGAGAGDDAQGG DRVVNAAGSADA RQQQSGAVPGGGEAGAIATPTGMNVERQE SGLQ XXXXXXXXASAGLAPMDEDGGSHAAPAXXXXXXXXXXXXEGGVVG
Sbjct: 14 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKKGEAGGDMMEEPEADDGETDGAGAGAGDDAQGGRDRVVNAAGSADAHRQQQSGAVPGGGEAGAIATPTGMNVERQEPPSGLQXXXXXXXXXXXXASAGLAPMDEDGGSHAAPAXXXXXXXXXXXXEGGVVG 247
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A6V1RK43_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RK43_HETAK) HSP 1 Score: 126 bits (316), Expect = 8.290e-33 Identity = 59/78 (75.64%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLD 234
AC+QR++K+VLPDN+QIGKDAKAAF+R+AGIFIMYLTACANDFCRE+KRQTI+ DVM AI ELEF +L EPLK++L+
Sbjct: 41 ACIQRIVKAVLPDNIQIGKDAKAAFARAAGIFIMYLTACANDFCRESKRQTITGPDVMMAISELEFHDLVEPLKDFLE 118
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S2SN07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN07_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.680e-30 Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKKGEAGGDMMEEPDADDGETD 369
ACVQR+IKS LPDN QI K++KAAFS++AGIFI+YLT CANDFC+E KR TIS+ DVM A++ELEF +L PL+E+L YR++AS KK AA A AA E G ++ ADDGE D
Sbjct: 76 ACVQRIIKSALPDNCQITKESKAAFSKAAGIFIIYLTTCANDFCKENKRSTISSADVMSAMRELEFHDLMGPLEEFLTNYRKDASTKKDGVAAATVASAPAAD-AELPGKKSDKAAADDGEDD 197
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S2DWQ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ9_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.530e-27 Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKKGEAGGDMMEEPDADDGE 363
ACVQR+IK VLPD+ QI K++K AFS++AGIFI+YLT CANDFC+E KR TIS+ DV+ A++ELEF +L PL+E+L YR++ +AKK+ + A A GG++ ++PD+ GE
Sbjct: 29 ACVQRIIKGVLPDSCQITKESKTAFSKAAGIFIIYLTTCANDFCKEGKRSTISSADVLAALRELEFHDLIGPLEEFLAHYRQDTNAKKELGNSSAKAAHAITAVPNGGGNVEQQPDSGIGE 149
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S3HH50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH50_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.910e-25 Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKK 264
ACV RV+K+ LP+N+ + KDA+AAF R+AGIFI YLT C+NDFCRE+KR TI QDVM A++EL F + E+PL+E+L+ Y++++ +K
Sbjct: 21 ACVSRVMKAALPENILLTKDARAAFVRAAGIFIFYLTHCSNDFCRESKRATIFPQDVMAALRELGFEDFEKPLEEFLEAYKKDSEQRK 108
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A1E7FAU9_9STRA (CBFD_NFYB_HMF domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAU9_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.130e-24 Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKA 276
ACV+R++K LP + +GKDA AAF+R++GIFI+YLTACANDF RE +RQTI+A DV+ AIKELEF E L +L+ YR KK KA
Sbjct: 3 ACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFLEGYREAEKNKKDVKA 94
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S2WSI8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WSI8_9STRA) HSP 1 Score: 105 bits (262), Expect = 4.220e-24 Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMG 285
ACV+R++KS LP + +GKDA +AF+R+ GIF++YLTACANDF RE KRQTI+A D+M +IKEL+F E L +L+Q+R+E K++ K A G
Sbjct: 38 ACVRRLLKSSLPTSTNVGKDASSAFARACGIFVIYLTACANDFARENKRQTITANDIMASIKELDFDEFTPQLTGFLEQHRKEEKEKRERKKASG 132
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S1UNS2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNS2_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.230e-23 Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAA 279
AC++R++K LP + +GKDA AAF+R+ GIF++Y+TACANDF E +RQTI+A DV+ A+KEL+F E LK +L+ YR +K+++KAA
Sbjct: 25 ACIRRILKHALPSSTNVGKDASAAFARACGIFVIYITACANDFAHENRRQTITANDVLAALKELDFDEFTPQLKTFLENYRAAEKSKREAKAA 117
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A6U9ZNZ1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZNZ1_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.450e-23 Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAA 279
ACV+R++K LP + +GKDA AAF+R++GIFI+YLTACANDF RE +RQTI+A DV+ AIKELEF E L +L++YR KK +KAA
Sbjct: 50 ACVRRILKQTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFAPELSTFLERYRELEKNKKDAKAA 142
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Match: A0A7S1D791_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D791_CYCTE) HSP 1 Score: 103 bits (256), Expect = 1.530e-23 Identity = 47/92 (51.09%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 1 ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKA 276
ACV+R++K+ LP + +GKDA AAF+R+ GIF++Y+TACANDF RE++RQTI+A DV+ ++KEL+F E L+ +LD++R +K+ +KA
Sbjct: 37 ACVRRILKNALPSSTNVGKDASAAFARACGIFVIYITACANDFARESRRQTITANDVLASVKELDFDEFSPHLEAFLDRHRAAEKSKRDAKA 128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15852.4304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15852.4304.1 >prot_Ecto-sp13_S_contig15852.4304.1 ID=prot_Ecto-sp13_S_contig15852.4304.1|Name=mRNA_Ecto-sp13_S_contig15852.4304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp ACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQback to top mRNA from alignment at Ecto-sp13_S_contig15852:568..1966+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15852.4304.1 ID=mRNA_Ecto-sp13_S_contig15852.4304.1|Name=mRNA_Ecto-sp13_S_contig15852.4304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15852:568..1966+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15852:568..1966+ >mRNA_Ecto-sp13_S_contig15852.4304.1 ID=mRNA_Ecto-sp13_S_contig15852.4304.1|Name=mRNA_Ecto-sp13_S_contig15852.4304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15852:568..1966+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |