mRNA_Ecto-sp13_S_contig15835.4298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15835.4298.1
Unique NamemRNA_Ecto-sp13_S_contig15835.4298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15835.4298.1 vs. uniprot
Match: D7FNK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK4_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.980e-42
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 ASPKIRVELDSRWQGGVETDDIRRRALADFTGFTGLHRGAETLVAAVPAAGWADSGNAIASEIAYAERLSRSRIQVASLQQHVR 252
            ASPKIR+ELDSRWQGGVETDDIRRRALA+FTGFTGLHRGAETLVA VPAAGWAD GNAIASEIAYAERLSRSRIQV SLQQHVR
Sbjct:  371 ASPKIRLELDSRWQGGVETDDIRRRALANFTGFTGLHRGAETLVAVVPAAGWADGGNAIASEIAYAERLSRSRIQVDSLQQHVR 454
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15835.4298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK4_ECTSI1.980e-4294.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15835contigEcto-sp13_S_contig15835:809..1463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462837.444005-CDS-Ecto-sp13_S_contig15835:808..8431681462837.444005-CDS-Ecto-sp13_S_contig15835:808..843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15835 809..843 +
1681462837.4538755-CDS-Ecto-sp13_S_contig15835:1244..14611681462837.4538755-CDS-Ecto-sp13_S_contig15835:1244..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15835 1245..1461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15835.4298.1prot_Ecto-sp13_S_contig15835.4298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15835 809..1461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15835.4298.1

>prot_Ecto-sp13_S_contig15835.4298.1 ID=prot_Ecto-sp13_S_contig15835.4298.1|Name=mRNA_Ecto-sp13_S_contig15835.4298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
ASPKIRVELDSRWQGGVETDDIRRRALADFTGFTGLHRGAETLVAAVPAA
GWADSGNAIASEIAYAERLSRSRIQVASLQQHVR
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mRNA from alignment at Ecto-sp13_S_contig15835:809..1463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15835.4298.1 ID=mRNA_Ecto-sp13_S_contig15835.4298.1|Name=mRNA_Ecto-sp13_S_contig15835.4298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=655bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15835:809..1463+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCCCGAAAATTCGTGTGGAGCTAGACTCCAGGTGGGTACCTTATTT
CAATAAACCCCAGACTGAGCAATTCAAACGGCGAAAGTTGGATTATCTTG
CTGTCTGGAAAAATGCATCGACGTTGTCTAGCCGCCGGTCTGGGCGAGGG
TCTAGAGACAAGTCATCAGCGCATACGTGCGTGTGGTCAAGGTTACTCGA
GAACACTGCTTTGTGGCAGGCCAAAATGCACCGCGGTTGCGTCGGACAAT
AAGCGGTAATATCGACGTCGTTGACATGATGACTGATCATAATATGTTGT
CGCTTGTGCAGAGTGTCTTGTTTGGTGTTTTGCTACATGGTACTACAGGG
TCGTCGAAGCCGCGTTGGTACACGCACTAATCCCACCGGACTGCTGAACA
CAAGAAAAATGTCTCTTTCGACAAAACCAACGTTAGGTGGCAGGGCGGGG
TGGAGACCGACGATATCCGTCGTCGCGCACTCGCCGACTTCACGGGCTTC
ACGGGGCTCCACCGGGGAGCCGAGACCCTCGTGGCCGCGGTGCCGGCGGC
GGGCTGGGCGGACAGCGGCAACGCCATCGCTTCCGAGATCGCGTACGCGG
AGCGCCTCTCTAGGTCGAGGATTCAGGTTGCTTCGCTGCAGCAGCATGTA
CGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15835:809..1463+

>mRNA_Ecto-sp13_S_contig15835.4298.1 ID=mRNA_Ecto-sp13_S_contig15835.4298.1|Name=mRNA_Ecto-sp13_S_contig15835.4298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15835:809..1463+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCCCGAAAATTCGTGTGGAGCTAGACTCCAGGTGGCAGGGCGGGGT
GGAGACCGACGATATCCGTCGTCGCGCACTCGCCGACTTCACGGGCTTCA
CGGGGCTCCACCGGGGAGCCGAGACCCTCGTGGCCGCGGTGCCGGCGGCG
GGCTGGGCGGACAGCGGCAACGCCATCGCTTCCGAGATCGCGTACGCGGA
GCGCCTCTCTAGGTCGAGGATTCAGGTTGCTTCGCTGCAGCAGCATGTAC
GG
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