mRNA_Ecto-sp13_S_contig15812.4285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15812.4285.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI) HSP 1 Score: 1067 bits (2760), Expect = 0.000e+0 Identity = 674/771 (87.42%), Postives = 682/771 (88.46%), Query Frame = 1
Query: 1 QCEALEAAADCVEACFRRQTPTKKGEEGGQQGGLGPSPVAVGQGSTLATAGTTAAVVPSSEAFDDDVSGPLATAVIRSLRFFRAAAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPARALLAAGGFHVLWRLPLDPAATPMGEALALGALCQGIRHADVLRVFLTRWEEGVGDGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIMQYVALVECLQLVRKLAAKAGTTVAAAKAAEATDXXXXXXXXXXXXXXXXXVAAGPAAVKGMEDLAHALGALEALVSEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKADAKSGDSSGTAAPEXXXXXXXXXXDPNVAAAISAHLGREAARDKRPRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPASAAAALVFAGVRQVALRLLRGAGDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPEGSPTIEALADGLDQTLVTPGGLARLLVRSCQALSAADLALSTADKSPETGRGGAVIDGGGGKXXXXXXXXXXXXXXXV---TGATSGIFSGGAEADMTAALRKLHELGPSLAGRSSVREVTCRFALPAVLNPPPGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWGSLRSRVDVLADEVGWSDSLSHRLYLFHTAMGMVALDAKKPAAAAGGSKRSKGAGSGDLPRAGEMMAGLARQSHTLAVY 2304
+CEAL+AAADCVEACFRRQTP KKGEEGGQQGGL PSPVAV QGST+AT GTTA VVPSSEAF+DDVSGPLATAVIRSLRFFRAAAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPA ALLAAGGFHVLWRLPLDPAATPMG ALALGALCQGIRHADVLRVFLTRWEEGV DGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIMQYVALVECLQLVRKLA KAGTTVAAAKAAEAT XXXXXXXXXXXXXX GPAAVKGMEDLAHALGALEAL+SEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKA ARDKRPRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALVFAGVRQVALRLLRGAGDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPE SPTIEALADGLDQTLVTPGGLARLLVRSCQALSAADLALSTADKSP+ GRGG VIDG XXXXXX XXXXXX GAT+GI SGGAEADMTAALRKLHELGPSLAGRSSV EV CRFALPAVLNPPPGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWGSLRSRVD LADEVGWSDSLSHRLYLFHTAMGMVA+DAKKPAAA SKG GSGDLPRAGEMMAGLARQSHTLAVY
Sbjct: 360 ECEALDAAADCVEACFRRQTPAKKGEEGGQQGGLVPSPVAVEQGSTVATTGTTATVVPSSEAFNDDVSGPLATAVIRSLRFFRAAAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPAGALLAAGGFHVLWRLPLDPAATPMGVALALGALCQGIRHADVLRVFLTRWEEGVDDGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIMQYVALVECLQLVRKLATKAGTTVAAAKAAEATGKDGXXXXXXXXXXXXXXXX-GPAAVKGMEDLAHALGALEALMSEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKA----------------------------------------ARDKRPRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVFAGVRQVALRLLRGAGDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPESSPTIEALADGLDQTLVTPGGLARLLVRSCQALSAADLALSTADKSPQAGRGGMVIDGXXXXXXXXXXKTGXXXXXXXXXXAGATTGILSGGAEADMTAALRKLHELGPSLAGRSSVCEVACRFALPAVLNPPPGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWGSLRSRVDALADEVGWSDSLSHRLYLFHTAMGMVAMDAKKPAAAXXXXXXSKGGGSGDLPRAGEMMAGLARQSHTLAVY 1089
BLAST of mRNA_Ecto-sp13_S_contig15812.4285.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE) HSP 1 Score: 1029 bits (2660), Expect = 0.000e+0 Identity = 668/782 (85.42%), Postives = 681/782 (87.08%), Query Frame = 1
Query: 1 QCEALEAAADCVEACFRRQTPTKKGEEGGQQGGLGPSPVAVGQGSTLATAGTTAAVVPSSEAFDDDVSGPLATAVIRSLRFFRAAAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPARALLAAGGFHVLWRLPLDPAATPMGEALALGALCQGIRHADVLRVFLTRWEEGVGDGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIMQYVALV-------ECLQLVRKLAAKAGTTVAAAKAAEATDXXXXXXXXXXXXXXXXXVAAGPAAVKGMEDLAHALGALEALVSEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKADAKSGDSSGTAAPEXXXXXXXXXXDPNVAAAISAHLGREAARDKRPRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPASAAAALVFAGVRQVALRLLRGAGDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPEGSPTIEALADGLDQTLVTPGGLARLLVRSCQALSAADLALSTADKSPETGRGGAVIDGGGGKXXXXXXXXXXXXXXXVTGATSGIFSGGAEADMTAALRKLHELGPSLAGR-------SSVREVTCRFALPAVLNPPPGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWGSLRSRVDVLADEVGWSDSLSHRLYLFHTAMGMVALDAKKPAAAAGGSKRSKGAGSGDLPRAGEMMAGLARQSHTLAVY 2304
+CEAL+AAAD +EACFRRQT KKGEEGG+QGGLGPSPVAV QGSTLATAGTTAAVVPSSEAF+DDVSGPLATAVIRSLRFFR AAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPARALLAAGGFHVLWRLPLDPAATPMG ALALGALCQGIRHADVLRVFLTRWEEGV DGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIM EC + R + G XXXXXXXXXXXXX AAGPAAVKGMEDLAHALGALEALVSEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKADAK+GD+S TAAP+ DPNVAAAISAHLGREAARDK+PRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALVFAGVRQVALRLLRG+GDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPEGSPTIEALADGLDQ ALSAADLALSTADKSPE GRGGAVIDGG XXXXXXXXXXXXXXXV GAT+GI SGGAEADMTAALRKLHELGPSLAGR SSV EV CRFALPAVL P PGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWG LRSRVD LADEVGWSDSLSHRLYLFHTAMGMVALDAKKPAAAAGGSKRSKG GSGDLPRAGEMMAGLARQSHTLAVY
Sbjct: 346 ECEALDAAADRMEACFRRQTAAKKGEEGGKQGGLGPSPVAVEQGSTLATAGTTAAVVPSSEAFNDDVSGPLATAVIRSLRFFRTAAAGTEAGSIPAGEGEEERGGGRHTPAVAVLADGSVTVDDGHRRVALAGLRLAGAVATAPSPARALLAAGGFHVLWRLPLDPAATPMGVALALGALCQGIRHADVLRVFLTRWEEGVDDGAGGAEAEGLSRLGGYEACASVLSRQVAHPAALSRGRSIMHRGEGGGGDGQGREC-RWGRGGCRRGG----GGXXXXXXXXXXXXXXXXXXXXAAAAAAAGPAAVKGMEDLAHALGALEALVSEGAGETSASGIQPGIRKGDRKRRLQGFEVLLAKADAKTGDASSTAAPDSNSNNKSD--DPNVAAAISAHLGREAARDKQPRGGLAPSLVALLWEHQLPAALAAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVFAGVRQVALRLLRGSGDPLSGALVFAGQPRSTAALAYGLDPSALATPVGPEGSPTIEALADGLDQ-----------------ALSAADLALSTADKSPEAGRGGAVIDGG---XXXXXXXXXXXXXXXVAGATTGILSGGAEADMTAALRKLHELGPSLAGRCDVVVKRSSVCEVICRFALPAVLKPLPGGGRASVTVTTSLLLWLLEGDQESCSDVLAERWGLLRSRVDALADEVGWSDSLSHRLYLFHTAMGMVALDAKKPAAAAGGSKRSKGGGSGDLPRAGEMMAGLARQSHTLAVY 1100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15812.4285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15812.4285.1 >prot_Ecto-sp13_S_contig15812.4285.1 ID=prot_Ecto-sp13_S_contig15812.4285.1|Name=mRNA_Ecto-sp13_S_contig15812.4285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=768bp QCEALEAAADCVEACFRRQTPTKKGEEGGQQGGLGPSPVAVGQGSTLATAback to top mRNA from alignment at Ecto-sp13_S_contig15812:181..4063+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15812.4285.1 ID=mRNA_Ecto-sp13_S_contig15812.4285.1|Name=mRNA_Ecto-sp13_S_contig15812.4285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15812:181..4063+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15812:181..4063+ >mRNA_Ecto-sp13_S_contig15812.4285.1 ID=mRNA_Ecto-sp13_S_contig15812.4285.1|Name=mRNA_Ecto-sp13_S_contig15812.4285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15812:181..4063+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |