mRNA_Ecto-sp13_S_contig15800.4274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15800.4274.1
Unique NamemRNA_Ecto-sp13_S_contig15800.4274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15800.4274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15800contigEcto-sp13_S_contig15800:2199..3575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size362
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.6323044-UTR-Ecto-sp13_S_contig15800:2198..22161681462835.6323044-UTR-Ecto-sp13_S_contig15800:2198..2216Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15800 2199..2216 +
1681462835.6871562-UTR-Ecto-sp13_S_contig15800:3298..33171681462835.6871562-UTR-Ecto-sp13_S_contig15800:3298..3317Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15800 3299..3317 +
1681462835.7040765-UTR-Ecto-sp13_S_contig15800:3538..35751681462835.7040765-UTR-Ecto-sp13_S_contig15800:3538..3575Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15800 3539..3575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462835.6472216-CDS-Ecto-sp13_S_contig15800:2216..24291681462835.6472216-CDS-Ecto-sp13_S_contig15800:2216..2429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15800 2217..2429 +
1681462835.6653023-CDS-Ecto-sp13_S_contig15800:3223..32981681462835.6653023-CDS-Ecto-sp13_S_contig15800:3223..3298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15800 3224..3298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15800.4274.1prot_Ecto-sp13_S_contig15800.4274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15800 2217..3298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15800.4274.1

>prot_Ecto-sp13_S_contig15800.4274.1 ID=prot_Ecto-sp13_S_contig15800.4274.1|Name=mRNA_Ecto-sp13_S_contig15800.4274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MSKSIMLSAGAHQGMIYWQNYGFPTFKTTTLVARRRRRQRPGLQHQRSPT
PSRRRPKSQTTSLQTRGTTEKKRPRNVVSSVTDHLLTKYSDAEEA*
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mRNA from alignment at Ecto-sp13_S_contig15800:2199..3575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15800.4274.1 ID=mRNA_Ecto-sp13_S_contig15800.4274.1|Name=mRNA_Ecto-sp13_S_contig15800.4274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15800:2199..3575+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCGTGCTGCGGAGGCATGTCCAAGTCCATCATGCTGAGCGCAGGGGC
ACACCAGGGTATGATTTATTGGCAGAACTATGGGTTCCCAACCTTCAAGA
CAACTACGCTGGTAGCAAGGCGCCGAAGGCGTCAACGCCCGGGACTCCAA
CACCAGCGAAGCCCAACACCAAGCAGGAGAAGGCCCAAGAGCCAGACCAC
GAGCCTGCAGACGCGTGGCACAACAGAGAAGGTGTGGTGACACTTGCGCT
GTTGCGTTGCGCGGACACCGACGTGCAGATTGATCCACTGCTGAACAATG
TTTGCGAAAATAAAAATACAGTACTTCCCCATGATCCAACCTACACAACC
AGCAGTCAGCTTAGGCTACGATTGCCCCAAACCACGGCGACACCGCTAAT
ACTTATGATGTTGAAGCAGGAAGACATTTTTTCTTCGTCTATACATCGCG
AAGAATTGTTGCACCTACCCCCCTTCCTTCGCTCTACGCGTTGGCCTGAG
TTTATTGAGTGAACGAATGGACAGCTTTCGAGAGCAGGTTACGCGTTTCG
CCGATTCGCCGTGCCTCTCGTTCGCGTACGAAAGAGCGGACTCCCATAAA
ACGGGACTGAACGCCGGTCTCGGTGGCGACGATATGATATACGACCCTGG
GCTTCACACAGTACTGCCGGCACCGTTGTCTCAACCATCAACCTGTAGAT
TGGCGCGTAGGGTCCATCGTGCATGTTGGTGCTCCGCATGCCGTCATGCT
CGACGCAGACGAGCCACAAGCAGAAGAGAGGAAACAAACTATTCATGCTG
CTGTCGGCACACACAAGAAGCTGACCGCTCTCCCTAGGGGCGCAACGTGT
GTCCACAATAGGATAAGCCGGAGGGTATGAACGATTGTACACCATGCTCC
CCCAAGGGTGTTCTGAACCGAGGTTTGACTTTACTACTGAGGAGTGTCGA
CAGCGTTCCAACAGCATGTGGATACCAAGGGTGTATCGCGCGGTCTCGCC
TCGAATTGAAAACGGCAAACGGCAGAAGCGCCCCAGGAATGTCGTCTCAA
GCGTCACCGATCACCTTCTCACTAAATACTCGGATGCGGAAGAGGCTTAG
GAGCGATGGAAAGCACATGGTGAGGGTGTACTTCTCGTGGAGGTTTTGTC
AGTGATGGGTGTGATTTGAATGGGCATATCCTTGTCATGGCCGTCGTCGA
ATTCGTCGTTGTTTTTTGCTGTTCCGGCTGATGTTGCAGCTGTTCTGAGG
ATGTGTATAAGGAGGCGGTATTGTTTCAAAAACAGAACGAATAGCACTAC
AACTGACTGCAGCATGCTAATGGGTGGTATCGTGATGCAGGAACAACCCT
CCACGAATAGTAGAGGGCAATTGGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15800:2199..3575+

>mRNA_Ecto-sp13_S_contig15800.4274.1 ID=mRNA_Ecto-sp13_S_contig15800.4274.1|Name=mRNA_Ecto-sp13_S_contig15800.4274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15800:2199..3575+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAAGTCCATCATGCTGAGCGCAGGGGCACACCAGGGTATGATTTA
TTGGCAGAACTATGGGTTCCCAACCTTCAAGACAACTACGCTGGTAGCAA
GGCGCCGAAGGCGTCAACGCCCGGGACTCCAACACCAGCGAAGCCCAACA
CCAAGCAGGAGAAGGCCCAAGAGCCAGACCACGAGCCTGCAGACGCGTGG
CACAACAGAGAAGAAGCGCCCCAGGAATGTCGTCTCAAGCGTCACCGATC
ACCTTCTCACTAAATACTCGGATGCGGAAGAGGCTTAG
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