mRNA_Ecto-sp13_S_contig15767.4248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15767.4248.1
Unique NamemRNA_Ecto-sp13_S_contig15767.4248.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: D7FYI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI8_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.040e-32
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRSGKDA 171
            L++LWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRSGKDA
Sbjct:   67 LSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRSGKDA 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: A0A6H5KSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.510e-30
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRSGKDA 171
            L++LWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSR GKDA
Sbjct:  278 LSNLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRFGKDA 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: A0A329RNE0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RNE0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.440e-10
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPC 135
            L+++WH S  N++D PRR FYAQY  + I A P DP PLS A+PC
Sbjct:  222 LSNVWHYSSSNESDGPRRAFYAQYSRERITARPKDPSPLSFAIPC 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: A0A662YDX4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDX4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCM 138
            L+++WH S  N++D PRR FYAQY    I A P+DP PLS A+PC+
Sbjct:  166 LSNVWHCSSSNESDAPRRAFYAQYSSGRITAGPNDPAPLSFAIPCV 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: A0A662X224_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X224_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.930e-9
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRGSRS 159
            L+++WH S  N++D PRR FYAQY    I A P+ P PLS A+PC+ +  S S
Sbjct:  248 LSNVWHCSSSNESDAPRRAFYAQYSSGRITAGPNGPAPLSFAIPCVSTSASAS 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: A0A6A4A515_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A515_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.710e-8
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPC 135
            L+++WH S  N++D PRR FYAQY  + I A P+D  PLS A+PC
Sbjct:  232 LSNVWHCSSSNESDAPRRAFYAQYSRERITARPTDAVPLSFAIPC 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Match: H3GIQ3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIQ3_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 4.360e-8
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSR-GSRSG 162
            L+++WH S  N++D PRR FYAQY  + I A P +  PLS A+PC   R GS +G
Sbjct:  228 LSNVWHCSSSNESDAPRRAFYAQYSSEKITARPKEVTPLSFAIPCNSKRSGSLAG 282
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15767.4248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYI8_ECTSI4.040e-3296.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK1_9PHAE7.510e-3094.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A329RNE0_9STRA3.440e-1055.56Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A662YDX4_9STRA6.100e-1054.35Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662X224_9STRA4.930e-949.06Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A4A515_9STRA1.710e-853.33Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3GIQ3_PHYRM4.360e-849.09Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15767contigEcto-sp13_S_contig15767:3759..3929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score60.5
Seed ortholog evalue3e-07
Seed eggNOG ortholog115417.EPrPW00000014635
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Phytanoyl-CoA dioxygenase. Source PGD
EggNOG OGs1MFTF@121069,2B580@1,2S0IH@2759
Cds size171
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462833.461831-CDS-Ecto-sp13_S_contig15767:3758..39291681462833.461831-CDS-Ecto-sp13_S_contig15767:3758..3929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15767 3759..3929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15767.4248.1prot_Ecto-sp13_S_contig15767.4248.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15767 3759..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15767.4248.1

>prot_Ecto-sp13_S_contig15767.4248.1 ID=prot_Ecto-sp13_S_contig15767.4248.1|Name=mRNA_Ecto-sp13_S_contig15767.4248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LNSLWHRSGPNQTDNPRRVFYAQYCLDAIRAAPSDPRPLSLAVPCMPSRG
SRSGKDA
back to top

mRNA from alignment at Ecto-sp13_S_contig15767:3759..3929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15767.4248.1 ID=mRNA_Ecto-sp13_S_contig15767.4248.1|Name=mRNA_Ecto-sp13_S_contig15767.4248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15767:3759..3929- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAAATAGTCTCTGGCACAGAAGCGGGCCGAACCAGACCGACAACCCGAG
GCGCGTCTTCTACGCGCAGTACTGCCTCGACGCCATCCGGGCAGCGCCCT
CCGACCCCCGCCCCCTAAGCCTCGCCGTGCCTTGCATGCCTTCGCGTGGC
TCGCGCTCCGGTAAGGATGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15767:3759..3929-

>mRNA_Ecto-sp13_S_contig15767.4248.1 ID=mRNA_Ecto-sp13_S_contig15767.4248.1|Name=mRNA_Ecto-sp13_S_contig15767.4248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15767:3759..3929- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAAATAGTCTCTGGCACAGAAGCGGGCCGAACCAGACCGACAACCCGAG
GCGCGTCTTCTACGCGCAGTACTGCCTCGACGCCATCCGGGCAGCGCCCT
CCGACCCCCGCCCCCTAAGCCTCGCCGTGCCTTGCATGCCTTCGCGTGGC
TCGCGCTCCGGTAAGGATGCG
back to top