mRNA_Ecto-sp13_S_contig15736.4231.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15736.4231.1
Unique NamemRNA_Ecto-sp13_S_contig15736.4231.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15736.4231.1 vs. uniprot
Match: D8LTD6_ECTSI (Protein kinase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD6_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 4.110e-71
Identity = 186/216 (86.11%), Postives = 189/216 (87.50%), Query Frame = 1 
Query:   19 GCDRMRRRDGSVGVGRGRRGRDRLSSLMMTEGQXXXXXXXXXXXXXXXXXXXXXSRRTSSSVGLTSRLAGLSLLEVAEASSPGPGKMEPRSRVSPYPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQGGWSSQGLASPMSVERSPWPNQERDRDRPREDGRGETPAKVREDLEKSLTELNNLSLSICNSEENDSPAKHDRQ 666
            G D +RRRDGSVGVGRGRRGRDRLSSLMMTEGQXXXXXXXXXXXXXXXXXXXXXSRRTSSSVGLTSRLAGLSLLEVAEASSPGPGKMEPRSR+SPYPKAA        XXXXXXXXXXXXXXXXXXXX            GQ  WSSQGLASPMSVER  WPNQERDRDRPREDGR ETPAKVREDLEKSLTELNNLSLSICNSEENDSPAKH+RQ
Sbjct: 1456 GDDGLRRRDGSVGVGRGRRGRDRLSSLMMTEGQXXXXXXXXXXXXXXXXXXXXXSRRTSSSVGLTSRLAGLSLLEVAEASSPGPGKMEPRSRLSPYPKAAAFAGGAISXXXXXXXXXXXXXXXXXXXXMLQAVPTPKPTQGQRSWSSQGLASPMSVERPAWPNQERDRDRPREDGRAETPAKVREDLEKSLTELNNLSLSICNSEENDSPAKHERQ 1671
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15736.4231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTD6_ECTSI4.110e-7186.11Protein kinase domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15736contigEcto-sp13_S_contig15736:1511..4048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score249.2
Seed ortholog evalue1.8e-63
Seed eggNOG ortholog2880.D8LTD6
Model size690
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs28UP7@1,2R1E5@2759
Cds size690
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.079596-CDS-Ecto-sp13_S_contig15736:1510..15671681462832.079596-CDS-Ecto-sp13_S_contig15736:1510..1567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15736 1511..1567 -
1681462832.0889392-CDS-Ecto-sp13_S_contig15736:1979..20651681462832.0889392-CDS-Ecto-sp13_S_contig15736:1979..2065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15736 1980..2065 -
1681462832.0969992-CDS-Ecto-sp13_S_contig15736:2503..26781681462832.0969992-CDS-Ecto-sp13_S_contig15736:2503..2678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15736 2504..2678 -
1681462832.1049967-CDS-Ecto-sp13_S_contig15736:3019..32111681462832.1049967-CDS-Ecto-sp13_S_contig15736:3019..3211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15736 3020..3211 -
1681462832.1129332-CDS-Ecto-sp13_S_contig15736:3868..40481681462832.1129332-CDS-Ecto-sp13_S_contig15736:3868..4048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15736 3869..4048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15736.4231.1prot_Ecto-sp13_S_contig15736.4231.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15736 1511..4048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15736.4231.1

>prot_Ecto-sp13_S_contig15736.4231.1 ID=prot_Ecto-sp13_S_contig15736.4231.1|Name=mRNA_Ecto-sp13_S_contig15736.4231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MPVGGVGCDRMRRRDGSVGVGRGRRGRDRLSSLMMTEGQRKKQRRRQSKA
KRRRVSISIKSRRTSSSVGLTSRLAGLSLLEVAEASSPGPGKMEPRSRVS
PYPKAAAFAGGAISEGEEEDEDDEQQEEEDKDSSMLQAVPTPKPTQGQGG
WSSQGLASPMSVERSPWPNQERDRDRPREDGRGETPAKVREDLEKSLTEL
NNLSLSICNSEENDSPAKHDRQQQQQQLPS
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mRNA from alignment at Ecto-sp13_S_contig15736:1511..4048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15736.4231.1 ID=mRNA_Ecto-sp13_S_contig15736.4231.1|Name=mRNA_Ecto-sp13_S_contig15736.4231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2538bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15736:1511..4048- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCGGCGGCGTTGGGTGCGACAGGATGCGACGGCGAGACGGCTC
CGTCGGGGTCGGGAGAGGCAGGCGAGGCCGGGATCGCCTCAGCAGCCTCA
TGATGACCGAGGGGCAGCGGAAGAAACAGCGGCGGCGGCAGTCCAAGGCA
AAACGGCGGAGGGTTTCCATCAGCATCAAGGTACCAATAGTACAATAGGC
GTCGTAGATAGAACCTTAACCTTGCAAGATTTGAACGGCAGCACCCATCG
CTGCTCAAGAGGACACGTCAAGACAACCGGTCCTGTCATCGAAGCTCTCA
GCGTCTTAACCTTAACATCAACATTGTGATGTTTTCTTTGCGCTGATCTT
GAGAAGATGCGGCCACCCTGGTCTCGACCCTCCGATTTCGACCGTTGACT
CTTCTATCCACTATTGCATCGCTCTTCCCCCTTTTCGTTTGGCCACCCAT
GCCGGTGGTCCACCAGCCCCCTTGACGTGATGCAGTATTGTCTTCGCCTC
CGGCTATATCTTGTAAGCTACCGTCTCCATTCCGTCTATTCTCCACCATC
GCCACTGCCTTTTTCGTGAAGCTTCTTCACCCAGATTTCGGACGTCGGTT
ACGGCTTCATCATGTCTTGACCCTTACGTTTGTCCCGCCGTCGAAGCTGT
ACCTCCCCCCCCCAGTCCCCTCTACTCTCTGGCCGTCACCCCATCCCTGC
ATGTCGTTCGAACAAAAATCGCACCCAACAAGTCAACCTTTATCATCGAC
CTGCCGATGCCCAGCTGACACTTGCTCATACCCCATTCCCTCCGTTGCTC
GATGTAACGTCTTTTTCATCGTGGGAAAAAAAAACAGTCTCGGAGGACAA
GCAGCAGCGTGGGGTTAACCTCTCGCCTGGCGGGGCTTTCTCTTCTGGAG
GTGGCGGAGGCCTCCAGCCCTGGCCCCGGCAAGATGGAGCCGCGTTCTCG
TGTGTCTCCCTATCCCAAGGCTGCCGCGTTCGCTGGTGGCGCCATCTCCG
AGGGAGAAGAGGAGGACGAGGACGATGAGGTATATCTTGTGTGCATGAAT
GTGTGTGTGTGGTTTTATTTGGTCGAGTACGTAGGCAGGACAAGGGGCGG
GGGGGGACACAAGGGTGGTGAATGTTTTTTTTTTGTCAATCCCGTCGCAT
GGTAAATGCTGCTGCTTCTCGTTCTATGGTTTCGTTGGACAATCCTGACC
GGTGGTGCCAAGCGATTTGTATGTAGGCCTGATACGCTGTGTTGCGGTTG
GTTGTCTATCGGCGTTCCTTCATGACCTCTGGATGCTCATGTATGGTATT
TTTTCCAGCTGTTTTTTTGCGGAGCGGAAGCTAAAGCGTAATGCGCTCTT
GTTTCCCACGGTACTGGCAGCAACAAGAGGAGGAGGACAAGGACTCCAGC
ATGCTCCAGGCCGTACCGACGCCCAAACCTACCCAAGGCCAAGGGGGGTG
GTCCTCTCAAGGTTTAGCCAGTCCCATGTCGGTGGAAAGGTCCCCGTGGC
CAAACCAAGAGAGAGACAGAGATCGACCACGGGAAGACGGCAGAGGTATG
CATGCTTGTGGTGATAACGAGACACATGGTGTTGAAACCGCCAACATTGC
GGTGAGGCGTTCGTCGTTGGCCGCGTACCAGCAGCGGGCAGAGTGAGGCG
CTCCGGCCGTCGTGGACGAGAGCTTTGCGCTAGACGTTCGTCGTTGTTTT
TTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTGCTGTTTTTGTCTTGCTT
GTGGCGCTCCTCAATTGTCGCCGAGTAGCAGGAGATTTCGCTTCGGTCGC
AGGCTCGCCATGCCTACAACACCTGCCTGAACGTGTTCATTACGGTGTGT
GCTAACGAACGTCATGCAGGCTTTAGTCAAGTCAAGGACATACAGTACTA
CGGAACACCAAAATCCTTCTTCAACGTTCCGCGCCCTTTCACCCACGTTA
CTCCCGTCTCTTCCTCGGCCTTATGTTTTGCAGGAGAAACGCCTGCAAAG
GTTCGGGAAGACCTGGAGAAATCGCTGACGGAACTAAACAACCTCTCCTT
GTCCATCTGCAACAGCGAGGTCAGTTGTGGCGCGATCTACACGGGACTGC
TGTACTGTAACGTTGGACCGATCAGAACAATCAGGAGCATTGTCGGCGTG
TTCCGTGTTTGTGTAGAACAGTCGTTGGTGACGGGCGTGCGTCGTGTGCT
CCTCCGTTGCACGTCAAGGCATGGCGCGGTACGTGCATTTCGCTGGTGGA
TTCCAATAGCGTGTTCGATACGTGAGGTTATCAAACTTGACTTGTGCGTC
GACGTTTTGTCTGCCGTCGCAGCTGCAGGTGTGTCTGCTGCTAGTTTCTC
GTCTGTGCGAAAAAGCGCTTAACACCGTTGCCTGTCTCCTCGCCACCACT
CCATAGCGCCGCCTTCATGTCCGGTGGCTTGAACCATCGCCGCTGCCCCC
TCTGTTGTGGCTGCTGTATCGCTGCCCCCAGGAAAACGACTCGCCTGCCA
AGCACGATCGGCAGCAGCAGCAGCAGCAGCTGCCCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15736:1511..4048-

>mRNA_Ecto-sp13_S_contig15736.4231.1 ID=mRNA_Ecto-sp13_S_contig15736.4231.1|Name=mRNA_Ecto-sp13_S_contig15736.4231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15736:1511..4048- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCGGCGGCGTTGGGTGCGACAGGATGCGACGGCGAGACGGCTC
CGTCGGGGTCGGGAGAGGCAGGCGAGGCCGGGATCGCCTCAGCAGCCTCA
TGATGACCGAGGGGCAGCGGAAGAAACAGCGGCGGCGGCAGTCCAAGGCA
AAACGGCGGAGGGTTTCCATCAGCATCAAGTCTCGGAGGACAAGCAGCAG
CGTGGGGTTAACCTCTCGCCTGGCGGGGCTTTCTCTTCTGGAGGTGGCGG
AGGCCTCCAGCCCTGGCCCCGGCAAGATGGAGCCGCGTTCTCGTGTGTCT
CCCTATCCCAAGGCTGCCGCGTTCGCTGGTGGCGCCATCTCCGAGGGAGA
AGAGGAGGACGAGGACGATGAGCAACAAGAGGAGGAGGACAAGGACTCCA
GCATGCTCCAGGCCGTACCGACGCCCAAACCTACCCAAGGCCAAGGGGGG
TGGTCCTCTCAAGGTTTAGCCAGTCCCATGTCGGTGGAAAGGTCCCCGTG
GCCAAACCAAGAGAGAGACAGAGATCGACCACGGGAAGACGGCAGAGGAG
AAACGCCTGCAAAGGTTCGGGAAGACCTGGAGAAATCGCTGACGGAACTA
AACAACCTCTCCTTGTCCATCTGCAACAGCGAGGAAAACGACTCGCCTGC
CAAGCACGATCGGCAGCAGCAGCAGCAGCAGCTGCCCTCC
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