mRNA_Ecto-sp13_S_contig15733.4229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15733.4229.1
Unique NamemRNA_Ecto-sp13_S_contig15733.4229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15733.4229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15733contigEcto-sp13_S_contig15733:876..2030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size196
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462832.0139983-CDS-Ecto-sp13_S_contig15733:875..9441681462832.0139983-CDS-Ecto-sp13_S_contig15733:875..944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15733 876..944 +
1681462832.022535-CDS-Ecto-sp13_S_contig15733:1905..20281681462832.022535-CDS-Ecto-sp13_S_contig15733:1905..2028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15733 1906..2028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15733.4229.1prot_Ecto-sp13_S_contig15733.4229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15733 876..2028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15733.4229.1

>prot_Ecto-sp13_S_contig15733.4229.1 ID=prot_Ecto-sp13_S_contig15733.4229.1|Name=mRNA_Ecto-sp13_S_contig15733.4229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
VHLGLIIEYLDKDGALQRMVHDEDVVVAQSERKHGVEGCRRARKAALVHR
YDEIRRRGTCSPHE
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mRNA from alignment at Ecto-sp13_S_contig15733:876..2030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15733.4229.1 ID=mRNA_Ecto-sp13_S_contig15733.4229.1|Name=mRNA_Ecto-sp13_S_contig15733.4229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15733:876..2030+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACACCTTGGCCTCATCATCGAGTACCTGGACAAAGACGGGGCATTGCA
AAGGATGGTTCACGATGAGGTGCGTTCATGTCACAAGAGTATTTATCTTT
GAGCTGCTTGCTGGAGGTGTTGCTGCTGGGTGGGCGTTGGTAGTGTCGTG
CACGAAATAAACAACGCTGTCCGATTCCTCCGCCCTTTCCGATGCTGTCG
GATCTAGTGAAATAAAAGACATGAAGCGAGTCGCTTCGGAGAAATAGGTT
ATTCCAGGTACCGTAACGCACAGGCATTGCATGCAGTGAGGACACGAACT
AATGACAAGGAGGACGAGACTCTCAAATTTTGGGGACGTGCGCATGCAGC
GTTGTCCGTCACCAGCCCACAATGAAGTACCCAACGATATACAACGGGAG
TCACGTAGACTGTTGAGACGTGTACGGTAGCTTTCAGCTCTCACTTACGG
CGTGATGGTCCAATTTCATTCGCGAGGCTGGTTCCGCCGTCACGTTGTAT
AACAAACGATGCACCAGCTGTCGAGCGTGAAGGGTACTGGGCGAGAAGTT
ATTCTATTGCCAGGGCTAGGATTCGAGTTGAACACCCGGTACAGAAATTT
GTCAAAGAGCGAGCGTCGGAGTCTATTGATCGAGCTCACAGGTACAATGC
GTGGGGATTGCATCGCGCTTTGCCTGAGAAGGCGACGAGGGCAAAGGAGA
CTATACAATTGCGGGGGGAAAGGCACCGGGGTCAAGATCGGTCCCAGTTG
GGCTTCGCGACCCGAACCAACACAATCACGCAACATTTTTGGAGAGTCAG
GAACGCATTGAAACTTTGCAGACTCAATGCAGGGTTGTGCACCTTGTACA
TCACCCTGTACAATGCTCCGGTCTTGAAACGTCCATCGAACCATGCGCTC
ATGCACACAAAGAACACACCCTGATGCAGCTCATGACTCGCCAAACTCAC
TGGCCCCCTCCAACGAGCAACTCAACCGTCGTCGCAGACGACCACATCCC
GCGTTGTACGTTTTTTTCACTTGTACACAGGACGTTGTCGTGGCACAGTC
AGAGAGAAAGCACGGCGTAGAAGGTTGCCGTCGTGCAAGGAAGGCTGCCC
TTGTACATAGGTACGATGAGATACGCCGACGGGGGACGTGCAGCCCACAC
GAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15733:876..2030+

>mRNA_Ecto-sp13_S_contig15733.4229.1 ID=mRNA_Ecto-sp13_S_contig15733.4229.1|Name=mRNA_Ecto-sp13_S_contig15733.4229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15733:876..2030+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACACCTTGGCCTCATCATCGAGTACCTGGACAAAGACGGGGCATTGCA
AAGGATGGTTCACGATGAGGACGTTGTCGTGGCACAGTCAGAGAGAAAGC
ACGGCGTAGAAGGTTGCCGTCGTGCAAGGAAGGCTGCCCTTGTACATAGG
TACGATGAGATACGCCGACGGGGGACGTGCAGCCCACACGAG
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