mRNA_Ecto-sp13_S_contig15716.4214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15716.4214.1
Unique NamemRNA_Ecto-sp13_S_contig15716.4214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15716.4214.1 vs. uniprot
Match: D7G1W2_ECTSI (Similar to F59G1.4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W2_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.540e-99
Identity = 157/170 (92.35%), Postives = 162/170 (95.29%), Query Frame = 2 
Query:  149 MIRSFEDIDEAVAEYLERRRFANTLECFRSEKRHRTLLRDRLGKSDETLGGSEGGRRRRSLCGDDGRDFGHQTTSTGSVALLKAFDDGDMSAFLSAWAAFIPKILRRGTPSSLAREVRVAEFLACVHCAVLPFRAAALAEAAGPREASVGCAKSMSSFRRYLDRAQDVPR 658
            MI+SFEDIDEAVAEYLERRRFANTLECFRSE RHRTLLRDRLGKSDETL GSEGGRRRRS CGD+GRD GHQTTSTGSVAL KAFDDGD+SAFLSAWAAFIP ILRRGTPSSLARE+RVAEFLACVHCAVLPFRA ALA+AAGPREASV CAKSMSSFRRYLDRAQDVPR
Sbjct:    1 MIQSFEDIDEAVAEYLERRRFANTLECFRSEIRHRTLLRDRLGKSDETLEGSEGGRRRRSGCGDEGRDRGHQTTSTGSVALFKAFDDGDLSAFLSAWAAFIPNILRRGTPSSLARELRVAEFLACVHCAVLPFRATALAKAAGPREASVACAKSMSSFRRYLDRAQDVPR 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15716.4214.1 vs. uniprot
Match: A0A6H5KFS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS9_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 5.410e-88
Identity = 171/265 (64.53%), Postives = 177/265 (66.79%), Query Frame = 2 
Query:  257 LLRDRLGKSDETLGGSEGGRRRRSLCGDDGRDFGHQTTSTGSVALLKAFDDGDMSAFLSAWAAFIPKILRRGTPSSLAREVRVAEFLACVHCAVLPFRAAALAEAAGPREASVGCAK--------------------------------------------SMSSFRRYLDRAQDVPR-------------------------------ASLKSRIENLIDAVNLWRRSDPLLVRLLLRPVEGATHAGENERGPRFPSWDDFNTT 826
            L  DRLGKSDETL G EGGRRR SLCGDDGRD GHQTTSTGSVAL KAFDDGDMSAFLSAWAAFIPK LRRGTPSSLAREVRV EFLACVHCAVLPFRA ALA+AAGPREASV CAK                                            SMSSFRRYLDRAQDVPR                               ASLK++IENL+DAVNLWRRSDPLLVRLLLRPVEGATHA +NERGPRFPS DDF+TT
Sbjct:    3 LSLDRLGKSDETLEGFEGGRRR-SLCGDDGRDRGHQTTSTGSVALFKAFDDGDMSAFLSAWAAFIPKTLRRGTPSSLAREVRVVEFLACVHCAVLPFRATALAKAAGPREASVACAKVMVFLTCKRHHKEPLVRCHRGPRMFSLFCFNAATYCSMFGLDSQSMSSFRRYLDRAQDVPRVPDLSGYYALPHVPDPSVHPSFEALFEETWAASLKTKIENLMDAVNLWRRSDPLLVRLLLRPVEGATHAADNERGPRFPSCDDFSTT 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15716.4214.1 vs. uniprot
Match: D7G1W3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W3_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 9.270e-54
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 3 
Query:  828 GNGGCPPRMAGERKLAPSHNNAVVGRPSYDRPYEVVAQEHQSKPESSKNKIVSGVGCGQGGDGFVRGSPEAPGGVQQQRQRQPLLRSDSDRAILGRVDYGAVKRDL 1145
            GNGGCPPRMAGE KLAPSH+NAVVGRPSYDRPYEVVAQEHQS+ ESSKNKI SGVGCGQG DGFV GSPEAPGGVQQQRQRQPLLRSDSDRAILGRVDYGAVK DL
Sbjct:   66 GNGGCPPRMAGESKLAPSHSNAVVGRPSYDRPYEVVAQEHQSERESSKNKIGSGVGCGQGSDGFVLGSPEAPGGVQQQRQRQPLLRSDSDRAILGRVDYGAVKHDL 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15716.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1W2_ECTSI1.540e-9992.35Similar to F59G1.4 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KFS9_9PHAE5.410e-8864.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1W3_ECTSI9.270e-5492.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15716contigEcto-sp13_S_contig15716:210..4093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1148
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-07_003900.1
Cds size714
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15716.4214.1prot_Ecto-sp13_S_contig15716.4214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15716 496..3945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.0196342-UTR-Ecto-sp13_S_contig15716:209..4951681462831.0196342-UTR-Ecto-sp13_S_contig15716:209..495Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15716 210..495 -
1681462831.1076078-UTR-Ecto-sp13_S_contig15716:3945..40931681462831.1076078-UTR-Ecto-sp13_S_contig15716:3945..4093Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15716 3946..4093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.02789-CDS-Ecto-sp13_S_contig15716:495..5311681462831.02789-CDS-Ecto-sp13_S_contig15716:495..531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 496..531 -
1681462831.0367408-CDS-Ecto-sp13_S_contig15716:587..6561681462831.0367408-CDS-Ecto-sp13_S_contig15716:587..656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 588..656 -
1681462831.0548863-CDS-Ecto-sp13_S_contig15716:916..10151681462831.0548863-CDS-Ecto-sp13_S_contig15716:916..1015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 917..1015 -
1681462831.06729-CDS-Ecto-sp13_S_contig15716:1746..17971681462831.06729-CDS-Ecto-sp13_S_contig15716:1746..1797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 1747..1797 -
1681462831.0773957-CDS-Ecto-sp13_S_contig15716:2448..26131681462831.0773957-CDS-Ecto-sp13_S_contig15716:2448..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 2449..2613 -
1681462831.0877173-CDS-Ecto-sp13_S_contig15716:2785..29631681462831.0877173-CDS-Ecto-sp13_S_contig15716:2785..2963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 2786..2963 -
1681462831.0977283-CDS-Ecto-sp13_S_contig15716:3829..39451681462831.0977283-CDS-Ecto-sp13_S_contig15716:3829..3945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15716 3830..3945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15716.4214.1

>prot_Ecto-sp13_S_contig15716.4214.1 ID=prot_Ecto-sp13_S_contig15716.4214.1|Name=mRNA_Ecto-sp13_S_contig15716.4214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MIRSFEDIDEAVAEYLERRRFANTLECFRSEKRHRTLLRDRLGKSDETLG
GSEGGRRRRSLCGDDGRDFGHQTTSTGSVALLKAFDDGDMSAFLSAWAAF
IPKILRRGTPSSLAREVRVAEFLACVHCAVLPFRAAALAEAAGPREASVG
CAKSMSSFRRYLDRAQDVPRASLKSRIENLIDAVNLWRRSDPLLVRLLLR
PVEGATHAGENERGPRFPSWDDFNTTRQRGVPTTDGG*
back to top

mRNA from alignment at Ecto-sp13_S_contig15716:210..4093-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15716.4214.1 ID=mRNA_Ecto-sp13_S_contig15716.4214.1|Name=mRNA_Ecto-sp13_S_contig15716.4214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15716:210..4093- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGATTGTGCAGTAACCTCTAGCCGTTATTCGCTACTACGCCCAGTAGA
ACATCTTGCGCTCAGGAAAGGGTAGCATGGCCCAGGATACCCGCAGCAAC
GAAGGCAGCCGAATCTGAAAAAAAGCATAACACACAACTACTGACACGAT
GATTCGGAGCTTTGAGGACATCGATGAGGCTGTCGCAGAGTACTTGGAGC
GCCGACGCTTCGCTAACACTCTCGAGTGCTTTCGATCAGAGAAACGGCAT
CGCACACTCCTAAGGTATGCTGCTGACGACAGGATATCAGCTACGGGAGA
GCATGGGGCGGGCTTTTCCTCACTTTACGTTGGTCATCGGATGTACATGG
TTCCCGTATCTATTGGTTCCGCAGCATTCGGGGATCAGTCATGTGCTGCT
GACGCCAACACGTTTTCTGTGAGATGAAAAAAGCAAGGTGCATAGATGCA
AATGCGTAAGGTTCTTCAAAACTACACGCTTTGTTGTACACATCACGAAG
TACCAACCGCGCCAATATACAGCAGCACCACAGCAGTACATGCACGTAGC
ATGGCAGCTTCAAAAAGTCCGCTTGCCAACAATGGCATTCAGTTTCTGTG
TATATCTGCAATATGTTAGAGGGCAACAAATGTAAACGACCTTCCAGTGT
GCGGACTCCTGACCTGAGTGACTACTTTAGAGAGCATCATGGAGCAGTGG
CACGCGCGTTGGCACGCCCAGATCCACCTGTTGTGGGGCCGTGCGGTCGA
AAGCTGCAGGTGCGCGGCCCGAAAGTCCTCAAATCAAGGGTCCATAACCT
ACACGATTCACTGCTTTTATCCGCGCCGTCACAGACTCCCCTTGATGTGG
TGATCTCCAGTAGTAGCTTTCATCATTAGCTGCCCTGGACGACCCCCACT
TTGGGAGATTGGGACATTGACTGCGTGTGCAGCAGTGGATCGTGAACGGC
TTGCCAACCTAGATAATCGGACTGTTCGGGCCTTTGGCTACGGCCTGCGC
AAATTAGGAAGTTGTCTCTATAAGTAACTACGGATGCACCTCGTTGAGTG
TCGTCCAAGGGGAGCGTCCTCTAAAGTGGTGACTATAAATCCAAACATCG
ACAAATTTTTGCCACCTTTGACCTGAAAAGAGACCGGCTTGGGAAGTCTG
ACGAGACGCTAGGAGGCTCCGAGGGGGGGCGAAGAAGAAGGAGCTTGTGT
GGCGACGACGGCCGTGATTTTGGTCACCAAACGACTTCCACCGGCAGTGT
TGCTTTACTCAAAGCGTTCGACGATGGCGACATGTCCGCCTTCCTGTCAG
CTTGGGCGGTGAGAGCAGACACAGAAATCGTTCACGCCGTGATTCCGTAG
CTATCCCGTAGCACACACCAACCAAGCATATTTCATTGGTAAACTCTGCA
CCAATCTGCACCAATAAAAATTGATTTCTCTTTCAAGTGTGTCCCCGTTT
CCCGAACGAAACCTTTGAACTGACAACCAGGCGTTCATTCCAAAGATTTT
GCGACGCGGGACGCCATCCTCCCTGGCGCGAGAAGTCCGAGTGGCGGAGT
TCTTGGCCTGCGTGCACTGTGCGGTGTTGCCGTTTCGAGCCGCCGCTCTG
GCGGAAGCGGCGGGGCCGAGGGAGGCAAGCGTGGGCTGTGCGAAGGTGAT
GGTGTTCTTGACCTGCAAGCGCCAACACAACGATCCACTTGTTCGCTGTG
TAAAACCCTGAATGTTTGTGAAGAAACATAGCGATACCGCGAGGCCAAGA
TGTGTCGCGTGCGGAAGAAGAGTAACTGACATCCGGTCAGAGTCTATGCA
TACGTGCGTTGTGGGCACCAGAGGAAGTTTGAACAATCCATGGCACAAAA
GCAACTTGTCGTAGTCAAGAGCGACGCACAACTGATTTTACCATTATGAC
ATGGAAAAGGAGGAAAAGGAGGAGGTGTGGATGTACTCTCAAAGATCAAC
AAATCCATGTCTTCGTGCTGTATTCCTGCTGCCCCTTCCTCTCCGCCACG
AACAGCACGGGAGAAGATCGAAGTTTCCATCAGAGTGGTTGTTCTCGGTT
GACAATGCTCTGGGGGAGAACTGCACGACACATTCTAGCGCAACACCTCC
CCAAATGCCCTTTTTGCTGAGAGAGAGGGAACCTTAGCGCAGGGGCTTCT
ACTCGAGAGACTGCGGGTCCATTTCGCCTGGCTTAGGGTTTTCAAAGGTG
TACACTTACGACTTACAGCCTCGTGGCCCCCGGACGTTCAGCCTGTTTTC
TTTCGACGCGGCCGCCTATTGCTCCATGTTTGGTCTGGATTCTCAGTCCA
TGTCATCGTTCAGGAGGTATCTCGACCGCGCGCAAGACGTTCCTCGTGTG
CCCGACTTGTCGGGCTACTACGCCCTTCCCCACGTGCCCGACCCGTCCGT
TCACCCGTCGTTCAAGGCTCTGTTCGAAGAAACTTGGTCGGTGAGCAAGG
GAAGATAGTCCTTGGTGCCACCCTGCCAAACCGCAGGAAAGAGAGAAACG
ATGGTGGTCGTGAGGCGCGGTGATACAGATATCCTGCCAAGTACGACGAG
CAGAGAGGGCGACTACCTCTAGGCTAACGTAAAAATTCAACGCAAGGATA
GGATTATTAGCGGTTGGCAATGCTGCCGATAATTGCGTAGTGTGCCAATC
CGGAAGAAAGAACGGCACGTTGTGAGGTGCACGAACTGTCGCGCGTACGG
TGGGCAACTTCGCTGGTGCTAGACTGTGGCTCTACCAACAGCGAAAACGT
TGGCATCGGCACGTACCATCTAAGAGCGGTCCATGACATTGCAGCTTTTT
CATGCTTACGACGAAGTGCGGTCGTTTGGCGGATATCCAGCTTCAGCTTT
CATCATCGCCTCAATTGCATTCGCGCGAGGACATCCATCTGCGTAGTTGA
CGAGCTTCCCCATAGTGCCTGCCATATTTTAGCATAATAGCTCACGAAAG
GCGAGCTGTGGGGCGTCGACCCACACTGCGGCAGCTTTACCTCTACCCTC
ACACCCGAAGTGTGCTGTCTCACGCTTGCCTCATAACTTCGCTCCCGCTG
CTCGCTGACCGTCTGTCGGAGCGCGCAGGCTAGTCTCAAATCGAGAATCG
AGAATTTGATTGACGCGGTCAACCTCTGGCGCCGCTCGGACCCGCTGCTC
GTAAGGCTCCTACTTCGCCCGGTTGAGGTACGGTCTGCCAACACGAAACT
AAACGTTGGCCATTCTCCTAAGATCACAAGCAGCCCACAGATAAACTTGG
TGACTCAATAAGGAAGGTAATGGTATCCTTGTCCGGAAGTCCATGTCTTC
CCCTCTGTTACATTATTGTTAGTACAGGTGGGCATCTATAGACATGGCAC
CTGACCTCCCAAGTTCCTATTATTTTTCCGTCCCCCTTCCCTATCGGGCG
CGCTTTGAATGTTGCGATGTTCACGGCTCTCACCAAGGGTGCCACACACG
CCGGCGAAAACGAGCGCGGTCCCCGCTTCCCGTCATGGGACGATTTCAAC
ACCACTGGAAACAATTTCTCCGATGCCCCGCGGGTACCAAGATCAAGGAC
CCTCAACGGCAGCGGCAACGGGGGGTGCCCACCACGGATGGCGGGTGAGA
GGAAACTAGCGCCCTCGCACAACAACGCGGTGGTCGGAAGGCCCTCGTAC
GATAGACCATACGAAGTTGTTGCTCAAGAACACCAAAGCAAGCCGGAATC
AAGCAAGAACAAGATCGTCAGCGGTGTTGGTTGTGGACAAGGCGGTGACG
GCTTCGTCCGGGGGAGTCCTGAAGCACCAGGGGGGGTCCAGCAGCAACGG
CAGCGCCAGCCGCTGCTAAGGTCTGACTCTGACAGGGCTATCTTGGGACG
CGTTGACTACGGCGCTGTCAAGCGCGACCTAAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15716:210..4093-

>mRNA_Ecto-sp13_S_contig15716.4214.1 ID=mRNA_Ecto-sp13_S_contig15716.4214.1|Name=mRNA_Ecto-sp13_S_contig15716.4214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15716:210..4093- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGGAGCTTTGAGGACATCGATGAGGCTGTCGCAGAGTACTTGGA
GCGCCGACGCTTCGCTAACACTCTCGAGTGCTTTCGATCAGAGAAACGGC
ATCGCACACTCCTAAGAGACCGGCTTGGGAAGTCTGACGAGACGCTAGGA
GGCTCCGAGGGGGGGCGAAGAAGAAGGAGCTTGTGTGGCGACGACGGCCG
TGATTTTGGTCACCAAACGACTTCCACCGGCAGTGTTGCTTTACTCAAAG
CGTTCGACGATGGCGACATGTCCGCCTTCCTGTCAGCTTGGGCGGCGTTC
ATTCCAAAGATTTTGCGACGCGGGACGCCATCCTCCCTGGCGCGAGAAGT
CCGAGTGGCGGAGTTCTTGGCCTGCGTGCACTGTGCGGTGTTGCCGTTTC
GAGCCGCCGCTCTGGCGGAAGCGGCGGGGCCGAGGGAGGCAAGCGTGGGC
TGTGCGAAGTCCATGTCATCGTTCAGGAGGTATCTCGACCGCGCGCAAGA
CGTTCCTCGTGCTAGTCTCAAATCGAGAATCGAGAATTTGATTGACGCGG
TCAACCTCTGGCGCCGCTCGGACCCGCTGCTCGTAAGGCTCCTACTTCGC
CCGGTTGAGGGTGCCACACACGCCGGCGAAAACGAGCGCGGTCCCCGCTT
CCCGTCATGGGACGATTTCAACACCACTCGGCAACGGGGGGTGCCCACCA
CGGATGGCGGGTGA
back to top