mRNA_Ecto-sp13_S_contig15647.4183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15647.4183.1
Unique NamemRNA_Ecto-sp13_S_contig15647.4183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A6H5L4A3_9PHAE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A3_9PHAE)

HSP 1 Score: 448 bits (1152), Expect = 3.410e-151
Identity = 325/390 (83.33%), Postives = 329/390 (84.36%), Query Frame = 1
Query:    1 KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRRSLVPS-PPAAXXXXXXXXXXXXXXXXXKLESSTSNVGGSGGISGAVLSPESSRXXXXXXXXXXXXXXXXXVGGRRAWVRGRRQAFAQAPNGVGEDVSGWLNDDNEVEGDGLSDLQGGKKLKAGAGQTSTHRHHHPIMPSTVSSESXXXXXXXXXXXXXXXXXXXXX------MPRRKSFTEPYSKDDPSRGTRMSRARRKSAPGKPPADVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXES-LLLLSPAKGINCRQTPSNAACSTPGDDSAAAASPGSCTGVERCVTRSSGGGGTSCRAR 1146
            KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRRSLVPS PPAAXXXXXXXXXXXXXXXXX              ISG+VLSPESSR                 VGGRRAWVRGRRQAFAQAPNGVGEDVSGWL+DDNEVEGDGLSDLQGGKKLKAGAGQTS HR              XXXXXXXXXXXXXXXXXXXXX      MPRRKSFTEPYSKD+PSRG RMSRARRKSAPGKPPADVLA  XXXXXXXXXXXXXXXXXXXXXXXXX   LLLLSPAKGINCRQT SNAACSTPGDD+AAA SPGSCTGVERCVTRSSGGGGTSCRAR
Sbjct:  193 KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRRSLVPSSPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ISGSVLSPESSRKKEAGRGATTAASAPTTVGGRRAWVRGRRQAFAQAPNGVGEDVSGWLDDDNEVEGDGLSDLQGGKKLKAGAGQTSAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPRRKSFTEPYSKDEPSRGMRMSRARRKSAPGKPPADVLAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLLSPAKGINCRQTSSNAACSTPGDDAAAAPSPGSCTGVERCVTRSSGGGGTSCRAR 579          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: D7G3T8_ECTSI (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T8_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 3.570e-41
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQ 231
            KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGL ADEAMERCQHVHDVRRIPISVGSPQTE+QRQQ
Sbjct:  193 KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLSADEAMERCQHVHDVRRIPISVGSPQTEAQRQQ 269          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A7S3YH03_HETAK (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH03_HETAK)

HSP 1 Score: 125 bits (315), Expect = 3.210e-30
Identity = 56/81 (69.14%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   13 LAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRV 255
            LA  L   LA+GEVMYLHCWGGHGRTGTV+C++LHLMY   AD+A ERCQ++HD+RRIP++VGSPQT+ QR+QVRRVI ++
Sbjct:  148 LAHHLVSLLAKGEVMYLHCWGGHGRTGTVICLLLHLMYNYTADQAFERCQYLHDLRRIPVAVGSPQTQGQREQVRRVIEKL 228          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A6C0F341_9ZZZZ (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F341_9ZZZZ)

HSP 1 Score: 112 bits (280), Expect = 4.680e-25
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    4 VLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVI 246
            V  LA  L   +  GEV+YLHCWGGHGRTG +VC+MLHLMYGL A+EA+ERCQ +HD+R++PI V SPQT  Q+ QVRR+I
Sbjct:  173 VFSLAKDLVKAIHDGEVVYLHCWGGHGRTGIMVCLMLHLMYGLTANEALERCQFLHDIRKMPIIVSSPQTFRQKDQVRRII 253          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A7S3M379_9STRA (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M379_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.590e-25
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVI 246
            KVL LA +L   ++ GEV+YLHCWGGHGRTGTVVCIML+L+YGL   +A + CQ VHD+R  P+ VGSPQT++QRQQV RVI
Sbjct:   34 KVLALAQKLTKDISEGEVIYLHCWGGHGRTGTVVCIMLYLLYGLNPKQAFDYCQAVHDLRTCPVEVGSPQTQTQRQQVVRVI 115          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A7S2WJS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJS5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.120e-24
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    4 VLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIA 261
            V +LA  L  R+ R EV+Y+HCWGGHGRTG++VCI+L+++Y LG++EA++ CQ VHD+RRIP+ V SPQ  +QR QVRR++ R IA
Sbjct:   57 VYKLALDLTRRMQRNEVIYMHCWGGHGRTGSLVCILLNIIYKLGSEEAIQYCQFVHDLRRIPMDVPSPQKPAQRNQVRRIV-RAIA 141          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: F0Y9Z0_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Z0_AURAN)

HSP 1 Score: 107 bits (268), Expect = 1.440e-22
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    4 VLQLAAQLAGRL-ARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRR 270
            V   A  LA R+    EV+YLHCWGGHGR GTVVC++LH +Y   A  AM RCQ VHD+RR+PI VGSPQT++QR QV RVI R I  R+
Sbjct:   89 VTDFAVALARRIKTTNEVVYLHCWGGHGRAGTVVCLLLHFLYDQDAASAMMRCQFVHDLRRVPIVVGSPQTQTQRDQVSRVIARSIVSRK 178          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A5A8C9N1_CAFRO (TYR_PHOSPHATASE_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9N1_CAFRO)

HSP 1 Score: 105 bits (262), Expect = 1.850e-22
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    4 VLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGR--VIAHRRSLVPSP 288
            VL+LA  L  RLA GE +Y+HCWGGHGRTGTVV IML LMYGL A   M   QHVHD+R  P+ VG+PQT  QR+QV R++      A R SL P P
Sbjct:  167 VLELAHDLVNRLASGENLYVHCWGGHGRTGTVVSIMLGLMYGLPARNCMAYLQHVHDLRICPMDVGTPQTSQQRRQVIRILSARPPAAPRASLAPDP 263          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A8J2T0D3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0D3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.170e-21
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    4 VLQLAAQLAGRL-ARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIA 261
            V   +  LA RL    EV+YLHCWGGHGR GT+ C++LH +YGL A +AM RCQ VHD+RR+PI VGSPQT++QR QV RV+   +A
Sbjct:  154 VAAFSRSLADRLRCTDEVIYLHCWGGHGRAGTITCLLLHWLYGLNALDAMARCQFVHDLRRVPIVVGSPQTQTQRDQVCRVVASSLA 240          
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Match: A0A7S3NIH7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIH7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-19
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   28 AGRLAR-----GEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAMERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRRSL 276
            A RLAR      +++YLHCWGGHGR GT+ C++ HL+YGL    AM RCQ VHD R+IPI+VGSPQT +Q  QV R+I R    ++SL
Sbjct:  202 ARRLARRIRDTDQIIYLHCWGGHGRAGTITCLLFHLLYGLDDKTAMRRCQLVHDCRKIPINVGSPQTRTQCDQVSRIIHRWTKKQQSL 289          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15647.4183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4A3_9PHAE3.410e-15183.33TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
D7G3T8_ECTSI3.570e-4197.40TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A7S3YH03_HETAK3.210e-3069.14Protein-tyrosine-phosphatase (Fragment) n=1 Tax=He... [more]
A0A6C0F341_9ZZZZ4.680e-2564.20TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A7S3M379_9STRA5.590e-2565.85Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Sp... [more]
A0A7S2WJS5_9STRA2.120e-2458.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0Y9Z0_AURAN1.440e-2260.00Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A5A8C9N1_CAFRO1.850e-2258.76TYR_PHOSPHATASE_2 domain-containing protein n=5 Ta... [more]
A0A8J2T0D3_9STRA2.170e-2158.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NIH7_9STRA1.530e-1955.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15647contigEcto-sp13_S_contig15647:2573..3721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score158.7
Seed ortholog evalue5.5e-36
Seed eggNOG ortholog2880.D7G3T8
Model size1149
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2BVII@1,2S2A7@2759
Cds size1149
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.59352-CDS-Ecto-sp13_S_contig15647:2572..37211681462828.59352-CDS-Ecto-sp13_S_contig15647:2572..3721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15647 2573..3721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15647.4183.1prot_Ecto-sp13_S_contig15647.4183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15647 2573..3721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15647.4183.1

>prot_Ecto-sp13_S_contig15647.4183.1 ID=prot_Ecto-sp13_S_contig15647.4183.1|Name=mRNA_Ecto-sp13_S_contig15647.4183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
KVLQLAAQLAGRLARGEVMYLHCWGGHGRTGTVVCIMLHLMYGLGADEAM
ERCQHVHDVRRIPISVGSPQTESQRQQVRRVIGRVIAHRRSLVPSPPAAA
AATSPAPKQHEHQHQHKLESSTSNVGGSGGISGAVLSPESSRKKEAGGGA
TTAAPASTTVGGRRAWVRGRRQAFAQAPNGVGEDVSGWLNDDNEVEGDGL
SDLQGGKKLKAGAGQTSTHRHHHPIMPSTVSSESLSSSVGVAAATAAAAG
ASSSSMPRRKSFTEPYSKDDPSRGTRMSRARRKSAPGKPPADVLAACAAA
AAADAASSSTSSGKEDNDDGSTESLLLLSPAKGINCRQTPSNAACSTPGD
DSAAAASPGSCTGVERCVTRSSGGGGTSCRAR*
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mRNA from alignment at Ecto-sp13_S_contig15647:2573..3721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15647.4183.1 ID=mRNA_Ecto-sp13_S_contig15647.4183.1|Name=mRNA_Ecto-sp13_S_contig15647.4183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15647:2573..3721- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGCTCCAACTCGCCGCACAGCTGGCCGGCCGGCTCGCCCGCGGCGA GGTGATGTACCTGCACTGTTGGGGGGGTCACGGCCGCACGGGCACCGTGG TGTGCATCATGCTGCACCTCATGTACGGCCTCGGCGCCGACGAGGCCATG GAGCGTTGCCAGCACGTGCACGACGTCCGGCGCATCCCGATCAGCGTGGG GTCCCCGCAGACAGAGTCGCAGCGTCAGCAGGTGCGCCGCGTCATCGGGC GCGTCATCGCCCACCGCCGGTCTCTCGTGCCGTCTCCGCCGGCGGCGGCG GCGGCCACCTCTCCTGCACCGAAGCAGCACGAGCACCAGCACCAGCACAA GCTGGAGTCGTCGACATCCAACGTCGGCGGCAGCGGCGGCATCAGCGGCG CCGTCCTCTCCCCGGAGAGCAGCAGGAAGAAGGAGGCCGGAGGAGGCGCG ACGACAGCTGCTCCTGCTTCGACTACCGTGGGCGGTCGCCGAGCGTGGGT GCGGGGGCGGCGGCAGGCGTTCGCCCAGGCGCCCAACGGCGTCGGTGAAG ACGTGTCCGGCTGGCTGAACGACGATAACGAAGTCGAAGGGGATGGGCTC AGCGACCTACAGGGTGGCAAGAAGCTCAAGGCGGGAGCGGGCCAGACCAG CACCCACCGCCACCACCACCCCATCATGCCTTCCACGGTGTCGTCGGAGT CGTTGTCGTCTTCGGTGGGGGTAGCAGCGGCGACGGCGGCAGCGGCAGGG GCGTCGTCGTCGTCGATGCCGCGCCGAAAGTCGTTCACGGAGCCCTACTC GAAGGACGACCCGTCGAGAGGGACGAGGATGAGCCGCGCGCGGCGGAAGT CGGCGCCGGGCAAGCCGCCGGCCGACGTGCTTGCGGCATGCGCTGCTGCT GCTGCTGCTGATGCCGCGTCGTCGTCGACGTCGTCGGGCAAAGAGGACAA CGATGACGGCTCGACGGAGTCGCTCCTGTTGCTGAGCCCCGCGAAGGGGA TCAACTGCCGCCAGACGCCGTCGAACGCCGCGTGCTCGACGCCAGGGGAT GATTCCGCGGCCGCCGCGTCCCCGGGTTCGTGCACGGGCGTTGAGCGGTG CGTAACGAGGTCTAGCGGCGGCGGGGGAACCTCGTGCCGCGCGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15647:2573..3721-

>mRNA_Ecto-sp13_S_contig15647.4183.1 ID=mRNA_Ecto-sp13_S_contig15647.4183.1|Name=mRNA_Ecto-sp13_S_contig15647.4183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15647:2573..3721- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGCTCCAACTCGCCGCACAGCTGGCCGGCCGGCTCGCCCGCGGCGA
GGTGATGTACCTGCACTGTTGGGGGGGTCACGGCCGCACGGGCACCGTGG
TGTGCATCATGCTGCACCTCATGTACGGCCTCGGCGCCGACGAGGCCATG
GAGCGTTGCCAGCACGTGCACGACGTCCGGCGCATCCCGATCAGCGTGGG
GTCCCCGCAGACAGAGTCGCAGCGTCAGCAGGTGCGCCGCGTCATCGGGC
GCGTCATCGCCCACCGCCGGTCTCTCGTGCCGTCTCCGCCGGCGGCGGCG
GCGGCCACCTCTCCTGCACCGAAGCAGCACGAGCACCAGCACCAGCACAA
GCTGGAGTCGTCGACATCCAACGTCGGCGGCAGCGGCGGCATCAGCGGCG
CCGTCCTCTCCCCGGAGAGCAGCAGGAAGAAGGAGGCCGGAGGAGGCGCG
ACGACAGCTGCTCCTGCTTCGACTACCGTGGGCGGTCGCCGAGCGTGGGT
GCGGGGGCGGCGGCAGGCGTTCGCCCAGGCGCCCAACGGCGTCGGTGAAG
ACGTGTCCGGCTGGCTGAACGACGATAACGAAGTCGAAGGGGATGGGCTC
AGCGACCTACAGGGTGGCAAGAAGCTCAAGGCGGGAGCGGGCCAGACCAG
CACCCACCGCCACCACCACCCCATCATGCCTTCCACGGTGTCGTCGGAGT
CGTTGTCGTCTTCGGTGGGGGTAGCAGCGGCGACGGCGGCAGCGGCAGGG
GCGTCGTCGTCGTCGATGCCGCGCCGAAAGTCGTTCACGGAGCCCTACTC
GAAGGACGACCCGTCGAGAGGGACGAGGATGAGCCGCGCGCGGCGGAAGT
CGGCGCCGGGCAAGCCGCCGGCCGACGTGCTTGCGGCATGCGCTGCTGCT
GCTGCTGCTGATGCCGCGTCGTCGTCGACGTCGTCGGGCAAAGAGGACAA
CGATGACGGCTCGACGGAGTCGCTCCTGTTGCTGAGCCCCGCGAAGGGGA
TCAACTGCCGCCAGACGCCGTCGAACGCCGCGTGCTCGACGCCAGGGGAT
GATTCCGCGGCCGCCGCGTCCCCGGGTTCGTGCACGGGCGTTGAGCGGTG
CGTAACGAGGTCTAGCGGCGGCGGGGGAACCTCGTGCCGCGCGAGGTGA
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