mRNA_Ecto-sp13_S_contig15610.4172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: D7FUE2_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE2_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.640e-44 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR
Sbjct: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 77
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA) HSP 1 Score: 125 bits (313), Expect = 7.190e-32 Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MP IEVGTVGGGTSLPAQAACLDV+GCRGA+QAP PG NA+Q+A+V+A A LAGELSL+AALASNQLVRAHMQHNR
Sbjct: 485 MPCIEVGTVGGGTSLPAQAACLDVIGCRGASQAPDAPGANARQLAQVIAAAVLAGELSLMAALASNQLVRAHMQHNR 561
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S2FDH1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDH1_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.650e-27 Identity = 55/77 (71.43%), Postives = 70/77 (90.91%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGTSLPAQA CLD++G RGA++AP PG+NAQ++ ++VA A +AGELSL++ALA+N+LV+AHMQHNR
Sbjct: 370 MPSIEVGTVGGGTSLPAQAQCLDIMGVRGASRAPKNPGDNAQKLGRMVAAAVMAGELSLLSALAANELVKAHMQHNR 446
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S0ST55_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST55_9STRA) HSP 1 Score: 105 bits (262), Expect = 8.420e-27 Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAP-GRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGT LPAQAACLD++ RGA++ P +PG+NA+++A+V+ A LAGELSL+AALA+N LVR+HMQHNR
Sbjct: 87 MPSIEVGTVGGGTHLPAQAACLDILDVRGASKGPHSQPGDNARKLAQVIGAAVLAGELSLIAALAANHLVRSHMQHNR 164
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A1E7FDJ4_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDJ4_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.070e-26 Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGTSLPAQAACL+ +GCRG PG +NA+++A VVA ATLAGELSL+AALA+N LV+AHM HNR
Sbjct: 141 MPSIEVGTVGGGTSLPAQAACLEAIGCRGGASTPG---DNARKLATVVAAATLAGELSLLAALAANTLVQAHMVHNR 214
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.950e-26 Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPS+EVGTVGGGTSLPAQ ACL+V+ GA++AP PG NAQ ++K +AGA LAGE+SL+AALASNQLVRAHM HNR
Sbjct: 366 MPSLEVGTVGGGTSLPAQRACLEVMNVAGASRAPKAPGTNAQALSKAIAGAVLAGEMSLMAALASNQLVRAHMIHNR 442
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S1CUP3_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUP3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.180e-25 Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGT LPAQAACL +G +G + PG+NA+Q+A VVA AT+AGELSL+AALASN LV AHM HNR
Sbjct: 23 MPSIEVGTVGGGTGLPAQAACLKAIGVKGGGE---NPGDNAKQLAHVVAAATMAGELSLMAALASNSLVAAHMTHNR 96
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A812U1Q8_SYMMI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U1Q8_SYMMI) HSP 1 Score: 97.8 bits (242), Expect = 7.270e-24 Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGT LPAQ+ CLD+ G RGA++ G+NA+Q+A++V + LAGELSL+AALA+N LVR+HMQHNR
Sbjct: 87 MPSIEVGTVGGGTHLPAQSGCLDICGVRGASRVAA--GDNARQLAQIVGASVLAGELSLMAALAANHLVRSHMQHNR 161
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA) HSP 1 Score: 102 bits (255), Expect = 8.460e-24 Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGTSLPAQAACL+ +GC+G PG NAQ++A VVA AT+AGELSL+AALA+N LV+AHM HNR
Sbjct: 555 MPSIEVGTVGGGTSLPAQAACLEAIGCKGGGSTPGA---NAQKLATVVAAATMAGELSLLAALAANTLVQAHMVHNR 628
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S3L823_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L823_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.600e-23 Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
MPSIEVGTVGGGT L AQAACL++VGCRG PG NA+++A VVA ATLAGELSL+AALA+N LV+AHMQHNR
Sbjct: 588 MPSIEVGTVGGGTRLAAQAACLELVGCRGGHST--EPGANARKLATVVASATLAGELSLLAALAANTLVQAHMQHNR 662 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15610.4172.1 >prot_Ecto-sp13_S_contig15610.4172.1 ID=prot_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGback to top mRNA from alignment at Ecto-sp13_S_contig15610:3535..4118+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15610.4172.1 ID=mRNA_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15610:3535..4118+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15610:3535..4118+ >mRNA_Ecto-sp13_S_contig15610.4172.1 ID=mRNA_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15610:3535..4118+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |