mRNA_Ecto-sp13_S_contig156.4163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig156.4163.1
Unique NamemRNA_Ecto-sp13_S_contig156.4163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig156.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig156contigEcto-sp13_S_contig156:14872..15570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size699
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.9377751-UTR-Ecto-sp13_S_contig156:14871..150211681462826.9377751-UTR-Ecto-sp13_S_contig156:14871..15021Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig156 14872..15021 +
1681462826.9576364-UTR-Ecto-sp13_S_contig156:15534..155701681462826.9576364-UTR-Ecto-sp13_S_contig156:15534..15570Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig156 15535..15570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.9480162-CDS-Ecto-sp13_S_contig156:15021..155341681462826.9480162-CDS-Ecto-sp13_S_contig156:15021..15534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig156 15022..15534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig156.4163.1prot_Ecto-sp13_S_contig156.4163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig156 15022..15534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig156.4163.1

>prot_Ecto-sp13_S_contig156.4163.1 ID=prot_Ecto-sp13_S_contig156.4163.1|Name=mRNA_Ecto-sp13_S_contig156.4163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MAGPLGDPQLMIRGHSSVGFSRVGFVYTAVYGRSCWPSRPLGHRLLCISS
LKSTSSQQQVRHGVSSAHTFMFYNSRETEEMTHKSQKMKKLTAVDRTCQS
QTNSKMRADFGSITAAAVCCCCARFISPQASKNSHQCPSCLVFWNGLLRC
LVCLLTFRIISAVTCVLCGQ*
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mRNA from alignment at Ecto-sp13_S_contig156:14872..15570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig156.4163.1 ID=mRNA_Ecto-sp13_S_contig156.4163.1|Name=mRNA_Ecto-sp13_S_contig156.4163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig156:14872..15570+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGATCTAGGATTCTCCGGAGATTGCGCAGCTCTCTCTTCTGCTCGTC
TGCCACCATCAGGCAGGACGGATGGGGGTGGCCGGTGTGTGCGCGCGCGC
ACTCTTGTGTGTGTCGCAGATATATAGCGAGGAGACCAAGAGTCAAACAG
ATGGCTGGGCCGTTGGGGGATCCCCAGCTAATGATCCGCGGGCATTCATC
GGTTGGGTTCTCTCGTGTTGGGTTTGTGTACACAGCAGTCTACGGTAGGT
CGTGCTGGCCAAGCAGACCACTGGGTCACCGACTCTTGTGTATCTCGTCT
CTCAAATCAACCTCATCGCAGCAACAAGTTAGACACGGTGTTAGCTCAGC
CCACACTTTCATGTTCTACAATAGTAGGGAGACGGAGGAAATGACCCACA
AGTCTCAAAAGATGAAAAAGTTGACAGCAGTTGACAGGACATGTCAAAGT
CAAACAAACTCGAAAATGCGCGCCGATTTTGGGAGCATCACTGCTGCTGC
TGTGTGCTGCTGCTGTGCGCGGTTTATTTCGCCACAAGCATCCAAGAATA
GCCACCAATGCCCATCATGCCTCGTTTTCTGGAACGGTTTACTTCGTTGT
CTGGTGTGCCTGCTTACCTTTCGAATCATTTCCGCCGTGACGTGTGTTTT
GTGCGGGCAGTGAGTTTACCCCACCATTTTCGGCCAGTTTGCGGGACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig156:14872..15570+

>mRNA_Ecto-sp13_S_contig156.4163.1 ID=mRNA_Ecto-sp13_S_contig156.4163.1|Name=mRNA_Ecto-sp13_S_contig156.4163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig156:14872..15570+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGGCCGTTGGGGGATCCCCAGCTAATGATCCGCGGGCATTCATC
GGTTGGGTTCTCTCGTGTTGGGTTTGTGTACACAGCAGTCTACGGTAGGT
CGTGCTGGCCAAGCAGACCACTGGGTCACCGACTCTTGTGTATCTCGTCT
CTCAAATCAACCTCATCGCAGCAACAAGTTAGACACGGTGTTAGCTCAGC
CCACACTTTCATGTTCTACAATAGTAGGGAGACGGAGGAAATGACCCACA
AGTCTCAAAAGATGAAAAAGTTGACAGCAGTTGACAGGACATGTCAAAGT
CAAACAAACTCGAAAATGCGCGCCGATTTTGGGAGCATCACTGCTGCTGC
TGTGTGCTGCTGCTGTGCGCGGTTTATTTCGCCACAAGCATCCAAGAATA
GCCACCAATGCCCATCATGCCTCGTTTTCTGGAACGGTTTACTTCGTTGT
CTGGTGTGCCTGCTTACCTTTCGAATCATTTCCGCCGTGACGTGTGTTTT
GTGCGGGCAGTGA
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