mRNA_Ecto-sp13_S_contig1558.4148.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1558.4148.1
Unique NamemRNA_Ecto-sp13_S_contig1558.4148.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1558.4148.1 vs. uniprot
Match: A0A6H5KUR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR9_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.840e-51
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:  300 LEAANSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGLLEVAALAAGAAGVVAIGLAEGWAGIGH 608
            ++   SKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQG+LEVAALAAGAAGVVAIGLAEGWAGIGH
Sbjct:  412 VQCGMSKHHAIHIQHTTAAGVFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVGGPVQGVLEVAALAAGAAGVVAIGLAEGWAGIGH 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1558.4148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUR9_9PHAE1.840e-5194.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1558contigEcto-sp13_S_contig1558:2569..3463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size646
Hectar predicted targeting categoryother localisation
Exons3
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.6848369-UTR-Ecto-sp13_S_contig1558:2568..26031681462825.6848369-UTR-Ecto-sp13_S_contig1558:2568..2603Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1558 2569..2603 -
1681462825.7152593-UTR-Ecto-sp13_S_contig1558:3116..32891681462825.7152593-UTR-Ecto-sp13_S_contig1558:3116..3289Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1558 3117..3289 -
1681462825.7920153-UTR-Ecto-sp13_S_contig1558:3427..34631681462825.7920153-UTR-Ecto-sp13_S_contig1558:3427..3463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1558 3428..3463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.6934214-CDS-Ecto-sp13_S_contig1558:2603..28981681462825.6934214-CDS-Ecto-sp13_S_contig1558:2603..2898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1558 2604..2898 -
1681462825.7032316-CDS-Ecto-sp13_S_contig1558:3009..31161681462825.7032316-CDS-Ecto-sp13_S_contig1558:3009..3116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1558 3010..3116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1558.4148.1prot_Ecto-sp13_S_contig1558.4148.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1558 2604..3116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1558.4148.1

>prot_Ecto-sp13_S_contig1558.4148.1 ID=prot_Ecto-sp13_S_contig1558.4148.1|Name=mRNA_Ecto-sp13_S_contig1558.4148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MGVLLGRLQNRFTRPAPCSSGKWCGQSPNDLEAANSKHHAIHIQHTTAAG
VFLGVAISLGAGAFPEGLLAACLALSAGATFHLASGPVLGPVLAIPADVG
GPVQGLLEVAALAAGAAGVVAIGLAEGWAGIGH*
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mRNA from alignment at Ecto-sp13_S_contig1558:2569..3463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1558.4148.1 ID=mRNA_Ecto-sp13_S_contig1558.4148.1|Name=mRNA_Ecto-sp13_S_contig1558.4148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1558:2569..3463- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGACGTAGCGACGCTAGTCCAGTGCGGCATGAGGTACAAAAAATAAT
TACTTCTGCTTAGTTCCGTCCAATTCCGTGTTTTTTTTTCAATATCTTGA
AGAACCGGGCGGATCAGGTGCACAACGTCTTCCGAAACCTGTGAATTTTG
TCCGTTTTTGGTTTGCGAACCCAGAGTTATGTTCGAGTCGGTGAAGCCGG
ACGTGGGTAGTTGGAATTCCATCAATTTACCCATTGAACGAGCGCGAAGT
TCGTGGGCGAGAAAACACAGGAACAGAGGGTGCATGCACACCACTACCGC
TCGGCAGTTTCATCAGTCACGTGCCTTGCCGCGCGCGGGGGATTGCGATG
GGTGTTTTGTTGGGGCGGCTTCAGAACCGGTTCACTCGCCCCGCCCCGTG
CTCATCTGGAAAGTGGTGTGGTCAATCGCCGAACGACCTTGAGGCAGCCA
ACAGGTGAGTTTTGCTCCCCCCCACTCTCCTTTGGTTAAAACACCAGCGG
CATGCTTGATCTTCTTCAGCGACCTGCCCCCCCCTCTCACCCCTGCGCCC
CTTTCTTTACCACAGCAAGCACCACGCGATCCACATCCAGCACACCACCG
CGGCAGGCGTATTTCTCGGGGTGGCCATCAGCCTGGGGGCCGGCGCTTTC
CCCGAGGGCCTCCTCGCCGCCTGCCTCGCCCTGTCCGCCGGAGCGACTTT
CCACCTCGCTTCCGGACCGGTCCTCGGACCGGTTCTCGCCATCCCGGCGG
ACGTCGGCGGACCCGTCCAGGGTCTCCTAGAGGTGGCGGCGTTGGCCGCC
GGGGCGGCGGGGGTAGTGGCGATCGGCCTGGCCGAAGGGTGGGCGGGAAT
AGGCCACTAGCTAGAGTGGACGCTCTGCCGACAAAAGAACAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1558:2569..3463-

>mRNA_Ecto-sp13_S_contig1558.4148.1 ID=mRNA_Ecto-sp13_S_contig1558.4148.1|Name=mRNA_Ecto-sp13_S_contig1558.4148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1558:2569..3463- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTTTTGTTGGGGCGGCTTCAGAACCGGTTCACTCGCCCCGCCCC
GTGCTCATCTGGAAAGTGGTGTGGTCAATCGCCGAACGACCTTGAGGCAG
CCAACAGCAAGCACCACGCGATCCACATCCAGCACACCACCGCGGCAGGC
GTATTTCTCGGGGTGGCCATCAGCCTGGGGGCCGGCGCTTTCCCCGAGGG
CCTCCTCGCCGCCTGCCTCGCCCTGTCCGCCGGAGCGACTTTCCACCTCG
CTTCCGGACCGGTCCTCGGACCGGTTCTCGCCATCCCGGCGGACGTCGGC
GGACCCGTCCAGGGTCTCCTAGAGGTGGCGGCGTTGGCCGCCGGGGCGGC
GGGGGTAGTGGCGATCGGCCTGGCCGAAGGGTGGGCGGGAATAGGCCACT
AG
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