mRNA_Ecto-sp13_S_contig1545.4078.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1545.4078.1
Unique NamemRNA_Ecto-sp13_S_contig1545.4078.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: D8LNX4_ECTSI (ATP-dependent protease peptidase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX4_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.570e-61
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    1 MRQPAAAAVLPFGKSAEGKRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGTPILRCLS 330
            MRQPAAA VLPFGKSAE KRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG  +  C++
Sbjct:    1 MRQPAAA-VLPFGKSAESKRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVA 109
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A7S2WBX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBX0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.090e-31
Identity = 68/110 (61.82%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 MRQPAAAAV-LPFGKSAEGKRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGTPILRCL 327
            MRQ  A AV  P G S         A+ G   HGTTILCVRK GKVV++GDGQVSQG MVVKPNA KVR++GDG VL G+AGSTADA TL+ERLE +LEEH G     C+
Sbjct:    3 MRQVLARAVRAPTGLSRAAYSASPVAADGSGRHGTTILCVRKEGKVVVIGDGQVSQGSMVVKPNAKKVRRMGDG-VLVGFAGSTADAFTLLERLEERLEEHPGQLTRACV 111
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A1L6JEK3_9SPHN (ATP-dependent protease subunit HslV n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1L6JEK3_9SPHN)

HSP 1 Score: 114 bits (285), Expect = 7.350e-30
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S  +  HGTTIL VR+NG+VV+ GDGQVSQG  V+KPNA KVR LGDG+V+AG+AG+TADA TL ERLEGKLE H+G
Sbjct:    2 SDNMTWHGTTILSVRRNGRVVIAGDGQVSQGSTVMKPNARKVRPLGDGKVIAGFAGATADAFTLFERLEGKLERHQG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A430G3G2_9SPHN (ATP-dependent protease subunit HslV n=1 Tax=Sphingomonas koreensis TaxID=93064 RepID=A0A430G3G2_9SPHN)

HSP 1 Score: 114 bits (285), Expect = 7.350e-30
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S  +  HGTTIL VR+NG+VV+ GDGQVSQG  V+KPNA KVR LGDG+V+AG+AG+TADA TL ERLEGKLE H+G
Sbjct:    2 SDNMTWHGTTILSVRRNGRVVIAGDGQVSQGSTVMKPNARKVRPLGDGKVIAGFAGATADAFTLFERLEGKLERHQG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A2W5A674_9SPHN (HslU--HslV peptidase proteolytic subunit (Fragment) n=1 Tax=Sphingomonas sanxanigenens TaxID=397260 RepID=A0A2W5A674_9SPHN)

HSP 1 Score: 113 bits (283), Expect = 9.540e-30
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S  L+ HGTTIL VRKNGKV+++GDGQVS G  V+KPNA KVR LGDG+V+AG+AG+TADA TL ERLE KLE H G
Sbjct:    2 SDSLKWHGTTILSVRKNGKVIVIGDGQVSMGQTVMKPNARKVRPLGDGKVIAGFAGATADAFTLFERLEAKLERHNG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A4Q3A541_9SPHN (ATP-dependent protease subunit HslV (Fragment) n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A4Q3A541_9SPHN)

HSP 1 Score: 109 bits (273), Expect = 9.840e-29
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S  ++ HGTTIL VRK G+V++ GDGQVSQG  V+KPNA KVR LGDG V+AG+AG+TADA TL ERLE KLE H+G
Sbjct:    2 SDKIQWHGTTILSVRKGGRVIIAGDGQVSQGSTVMKPNARKVRPLGDGSVIAGFAGATADAFTLFERLESKLERHQG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A2N3PSX7_9PROT (ATP-dependent protease subunit HslV n=2 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A2N3PSX7_9PROT)

HSP 1 Score: 111 bits (277), Expect = 1.090e-28
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   94 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGTPILRCL 327
            HGTTIL VRKNGKVV+ GDGQVS GD V+K NA KVR+LGDG V+ G+AG+TADA TL ERLE KLE+H G  I  C+
Sbjct:    8 HGTTILAVRKNGKVVIAGDGQVSLGDTVIKSNARKVRRLGDGSVIGGFAGATADAFTLFERLEAKLEKHPGQLIRACV 85
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A430DJ27_9SPHN (ATP-dependent protease subunit HslV n=5 Tax=Sphingomonas TaxID=13687 RepID=A0A430DJ27_9SPHN)

HSP 1 Score: 111 bits (277), Expect = 1.150e-28
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S+ +  HGTTIL VRKNG+VV+ GDGQVSQG  V+KPNA KVR LGDG V+AG+AG+TADA TL ERLE KLE H+G
Sbjct:    2 SNDMVWHGTTILSVRKNGRVVIAGDGQVSQGPTVMKPNARKVRPLGDGSVIAGFAGATADAFTLFERLEAKLERHQG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: A0A285QXS2_9SPHN (ATP-dependent protease subunit HslV n=1 Tax=Sphingomonas guangdongensis TaxID=1141890 RepID=A0A285QXS2_9SPHN)

HSP 1 Score: 110 bits (276), Expect = 1.680e-28
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:   94 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            HGTTIL VRKNGKVV++GDGQVSQG+ V+KPNA KVR+LGDG V+ G+AG+TADA TL ERLE KLE H G
Sbjct:    8 HGTTILSVRKNGKVVVIGDGQVSQGNTVMKPNARKVRRLGDGSVIGGFAGATADAFTLFERLEAKLERHGG 78
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BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Match: UPI00143B3045 (ATP-dependent protease subunit HslV n=1 Tax=Sphingomonas jejuensis TaxID=904715 RepID=UPI00143B3045)

HSP 1 Score: 110 bits (276), Expect = 1.680e-28
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   76 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEG 306
            S+ +  HGTTIL VRKNG+VV+ GDGQVS G  V+KPNA KVR+LGDG V+AG+AG+TADA TL ERLE KLE+H G
Sbjct:    2 SNEITWHGTTILSVRKNGRVVIAGDGQVSMGQTVIKPNARKVRRLGDGSVIAGFAGATADAFTLFERLERKLEQHHG 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1545.4078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX4_ECTSI3.570e-6191.82ATP-dependent protease peptidase subunit n=2 Tax=E... [more]
A0A7S2WBX0_9STRA1.090e-3161.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1L6JEK3_9SPHN7.350e-3070.13ATP-dependent protease subunit HslV n=6 Tax=Alphap... [more]
A0A430G3G2_9SPHN7.350e-3070.13ATP-dependent protease subunit HslV n=1 Tax=Sphing... [more]
A0A2W5A674_9SPHN9.540e-3070.13HslU--HslV peptidase proteolytic subunit (Fragment... [more]
A0A4Q3A541_9SPHN9.840e-2967.53ATP-dependent protease subunit HslV (Fragment) n=1... [more]
A0A2N3PSX7_9PROT1.090e-2869.23ATP-dependent protease subunit HslV n=2 Tax=Rhodos... [more]
A0A430DJ27_9SPHN1.150e-2870.13ATP-dependent protease subunit HslV n=5 Tax=Sphing... [more]
A0A285QXS2_9SPHN1.680e-2874.65ATP-dependent protease subunit HslV n=1 Tax=Sphing... [more]
UPI00143B30451.680e-2868.83ATP-dependent protease subunit HslV n=1 Tax=Sphing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1545contigEcto-sp13_S_contig1545:15193..16570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score194.1
Seed ortholog evalue3.4e-47
Seed eggNOG ortholog2880.D8LNX4
Preferred nameHslV
Model size330
KEGG koko:K01419
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000266,GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006508,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009295,GO:0009376,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031597,GO:0031974,GO:0032042,GO:0032991,GO:0033955,GO:0034641,GO:0034645,GO:0042623,GO:0042645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0070011,GO:0070013,GO:0070581,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1902494,GO:1904949,GO:1905368,GO:1905369
Exons3
EggNOG free text desc.Proteasome subunit
EggNOG OGs2RS9W@2759,COG5405@1
Ec32 ortholog descriptionATP-dependent protease, HslV subunit
Ec32 orthologEc-08_005470.1
EC3.4.25.2
Cds size330
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462821.1498373-CDS-Ecto-sp13_S_contig1545:15192..152731681462821.1498373-CDS-Ecto-sp13_S_contig1545:15192..15273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 15193..15273 +
1681462821.1733809-CDS-Ecto-sp13_S_contig1545:15850..159041681462821.1733809-CDS-Ecto-sp13_S_contig1545:15850..15904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 15851..15904 +
1681462821.1879077-CDS-Ecto-sp13_S_contig1545:16375..165701681462821.1879077-CDS-Ecto-sp13_S_contig1545:16375..16570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 16376..16570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1545.4078.1prot_Ecto-sp13_S_contig1545.4078.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1545 15193..16570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1545.4078.1

>prot_Ecto-sp13_S_contig1545.4078.1 ID=prot_Ecto-sp13_S_contig1545.4078.1|Name=mRNA_Ecto-sp13_S_contig1545.4078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MRQPAAAAVLPFGKSAEGKRMHSSASSGLEMHGTTILCVRKNGKVVMMGD
GQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEH
EGTPILRCLS
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mRNA from alignment at Ecto-sp13_S_contig1545:15193..16570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1545.4078.1 ID=mRNA_Ecto-sp13_S_contig1545.4078.1|Name=mRNA_Ecto-sp13_S_contig1545.4078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:15193..16570+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGCCGGCGGCGGCGGCGGTGTTACCCTTCGGGAAGAGCGCCGA
GGGCAAGAGGATGCACAGCTCGGCATCATCGGTGAGAATGAGGCTATTCA
GACTAACGAATCGGGTTGCACGCCATGCTGAGGAGACAAATGCGAAGGTG
TGGGTAGACTACAGCTGCCACGGTGGCGGTGGGGCCTCGCCGTTGGACAC
CCTGAGAATTGTGTTCAACGTCTGACACGTCCATGGCAGCAACACCTATT
GTTGTTGATGGCGCTGTAAGAAGGCTGACACAAGAACCGCAGGCGGAGGA
CCATACACAACGAGGGGGAGCGGTAAGATTTCGTGGCAGCCTCCCGGTCA
AAGCACCAGTTCTGTTCAGAGAACGGTTTGCGGTAGTTCGATCGCTGACG
CCTGGCCCTCTTTTGGCACTACGAGTACAAAACATTCTGAGATCACCGAC
AAATTCAGCATGCATCAAAGGCAGAGCCCCACAGTAACACACAAAGTCGG
AGGTTGTGCGCGCGCCACGGTCGCGAAATGGGTGTCTCTGGTAGCTTTGC
ACGACCCATAGTCTCGCGACAACTCATGCCTCGACTATTCTCCGACATGT
CTCAGGTTGTGGGCATCCCCGTCTGCGTCCCCACCCCCCCCCTCTCTTCC
TTTCTCAGGGGCTTGAGATGCACGGCACGACCATCTTGTGCGTCCGAAAG
AACGGGAAAGTGGTGAGTTTCACGCAGCAAAAGAAGAGGCTCACGCGAAA
ATTTCAGGTTCAGCGGGGACGCTTTTACTGACTGTCTGTCAACACCATGT
CCACAGTACAGAATGCACCGCAGAGCTGAAGTAGTGTGCGAGCGGCGAAG
TGCGCAATGCCCTTGTATTCACGCCGCGCGATACTGACTCGGCCCTATCT
CGCGGGGTACCTCGGCTGTGTTTTGTTTTTTCACGTGGAACTGTGGCAGC
ATAAACATGAGTTGGAGAGGAACGCTATGCTGTGAAGTCTCAACGTTGTC
AAAGCGCGCCTGCAGTATCAGGTTTTGGAGACTATCTTCATCTCAGGCGT
GCAGCAGTGCCCCTCACAGTATCAGGTTGTGGAGACTATCTTCATGTCGG
GCGTGGATGGAATAGGTTTGTAGCTTGTGCTTTCTACTTGTGCTGCGTTC
CATCGACCAACTCGCGGAATATCTTGTCGGCAGGTCATGATGGGGGATGG
GCAGGTCAGCCAGGGAGACATGGTGGTGAAGCCCAACGCCACCAAAGTCA
GAAAGCTGGGGGACGGGCGCGTGTTGGCGGGGTACGCCGGGTCGACGGCC
GACGCCTTGACGCTCATGGAGCGCCTCGAGGGCAAGCTTGAGGAACACGA
AGGTACCCCAATCCTCCGATGTTTGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1545:15193..16570+

>mRNA_Ecto-sp13_S_contig1545.4078.1 ID=mRNA_Ecto-sp13_S_contig1545.4078.1|Name=mRNA_Ecto-sp13_S_contig1545.4078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:15193..16570+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGCCGGCGGCGGCGGCGGTGTTACCCTTCGGGAAGAGCGCCGA
GGGCAAGAGGATGCACAGCTCGGCATCATCGGGGCTTGAGATGCACGGCA
CGACCATCTTGTGCGTCCGAAAGAACGGGAAAGTGGTCATGATGGGGGAT
GGGCAGGTCAGCCAGGGAGACATGGTGGTGAAGCCCAACGCCACCAAAGT
CAGAAAGCTGGGGGACGGGCGCGTGTTGGCGGGGTACGCCGGGTCGACGG
CCGACGCCTTGACGCTCATGGAGCGCCTCGAGGGCAAGCTTGAGGAACAC
GAAGGTACCCCAATCCTCCGATGTTTGTCC
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