mRNA_Ecto-sp13_S_contig15415.4055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15415.4055.1
Unique NamemRNA_Ecto-sp13_S_contig15415.4055.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15415.4055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15415contigEcto-sp13_S_contig15415:473..1825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size311
Hectar predicted targeting categoryother localisation
Exons3
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.2764482-UTR-Ecto-sp13_S_contig15415:472..5651681462819.2764482-UTR-Ecto-sp13_S_contig15415:472..565Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15415 473..565 +
1681462819.2846522-UTR-Ecto-sp13_S_contig15415:1238..12641681462819.2846522-UTR-Ecto-sp13_S_contig15415:1238..1264Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15415 1239..1264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462819.29275-CDS-Ecto-sp13_S_contig15415:1264..13591681462819.29275-CDS-Ecto-sp13_S_contig15415:1264..1359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15415 1265..1359 +
1681462819.3012714-CDS-Ecto-sp13_S_contig15415:1728..18251681462819.3012714-CDS-Ecto-sp13_S_contig15415:1728..1825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15415 1729..1825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15415.4055.1prot_Ecto-sp13_S_contig15415.4055.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15415 1265..1825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15415.4055.1

>prot_Ecto-sp13_S_contig15415.4055.1 ID=prot_Ecto-sp13_S_contig15415.4055.1|Name=mRNA_Ecto-sp13_S_contig15415.4055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MHSASDSVLSVSDGALRECRMHTRLLPTCSDRAIRGDAPWDGNGKKSPPQ
AEKFLGLPSALMG*
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mRNA from alignment at Ecto-sp13_S_contig15415:473..1825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15415.4055.1 ID=mRNA_Ecto-sp13_S_contig15415.4055.1|Name=mRNA_Ecto-sp13_S_contig15415.4055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15415:473..1825+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTGGCCATCAAAAAGGTTTCCCGAAGCGACAGCATGTTTTAGGGGGGT
CTGCAAGGGCTTGGCGCGGAAGAGATCGATGGGTACTGAGAAGGTGGGAA
TCAAACATGCACATGGCTCGTGCAGCTACAACACGGCGAACATGACATAA
TTTAGTGGCGCTCACCAAACACCTGCTCGGCTCGGCATGGACGCCGCTGC
GGTTCGTGTTGAGCACATTTCCGAAGTATGGGGCCCAACTTTCAGCGCGT
GGTGTATATTGTTGTGCTTCACGCCCCGAAACCAACCGAGAGCCCATAGC
ACCTCGTCGATAAAACTCTGTTGTAGTGGTGCAAACAAACTTGTATAGAA
ACTAATGCCGTTACGTTATAGTGTGTAGTCTGCCAAGCAGCACACAATAG
GTACAACGCGTTTCGTTGAAAGTAGAAATTGTGGGTAAACAAAGGTCCTC
CATGTGGAAATAACGGAGCACCCGGAACCCCCCGGGCCAAGATTGACACG
CAGGATAGCCGCGCAAAAAATTGCGCGGCTCACGGGCACACAGCTATTTT
GGCGGACCTGCGTCGCAGAGCGCCGCCCTGACGAAATCAGGCGGTTCAAT
TACGGTCGAGTGAGCCACGTTGGGCACAAGGGAGGGGTCGGCACAGCAGT
CCCCCCCCTACTGCTGTGTTTACTTTTGCACCAGTCTACTCTACCCAACA
TGCTTGGTGTGATATTATCGCCATTCTGACAGCTGCATTCGTATGATATT
ATCGCCACGTCTGCAGTACATAAATACTACGGAGTAAACAGGATGCATTC
GGCGAGCGACAGCGTGTTGAGTGTATCCGACGGAGCACTACGGGAGTGCC
GTATGCATACCAGGCTGCTGCCGACATGTTCAGATAGGTGTGTGGACTGT
GGTGTAGCAATGATTTTGATTGATTCACTATCCACAGCCCAGCGTTTTCC
GTCCATTCTTTGAGAAAGATCTTTATGCCAACAATGTCTTTTTGAGACTT
CGCGGCCGCTACTATGTGGGGCACTGCCCTCTTCCTCGAGCACTGGTCAT
TCGGCGGCAGGCATGACCTCCGACATACGGGCGGGCGCACACTAGCTTCG
TGTGGGATCCCGTTCGCACACGCTGAAAAAAGCGCCCGAAAAATGTCTAA
GCCCCGGGGATTTCGTCGAAGCATCCGCCCCCACGGGCCTCTCACACACA
CGCATATACCGCGACCAAGATTGCCTCATAGTCTGTGGGTGTTCCGTAAT
TTCCAGGGCTATACGTGGCGACGCTCCGTGGGATGGGAATGGCAAGAAAA
GCCCGCCGCAGGCGGAAAAATTTTTGGGCTTACCATCAGCTTTGATGGGA
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15415:473..1825+

>mRNA_Ecto-sp13_S_contig15415.4055.1 ID=mRNA_Ecto-sp13_S_contig15415.4055.1|Name=mRNA_Ecto-sp13_S_contig15415.4055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15415:473..1825+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATTCGGCGAGCGACAGCGTGTTGAGTGTATCCGACGGAGCACTACG
GGAGTGCCGTATGCATACCAGGCTGCTGCCGACATGTTCAGATAGGGCTA
TACGTGGCGACGCTCCGTGGGATGGGAATGGCAAGAAAAGCCCGCCGCAG
GCGGAAAAATTTTTGGGCTTACCATCAGCTTTGATGGGATAG
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