mRNA_Ecto-sp13_S_contig15348.4019.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15348.4019.1
Unique NamemRNA_Ecto-sp13_S_contig15348.4019.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Match: A0A6H5KPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC9_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 5.160e-109
Identity = 205/217 (94.47%), Postives = 210/217 (96.77%), Query Frame = 1 
Query:    1 QIAEKYVPAGDSVIFEGIPTDEGIQELLFSLPRYATLREKEIGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDMSPEEVAERXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEEGEDEG 651
            +IAEKYVPAGDSVIFEGIPT+EGIQELLFSLPRY TLREKEIGG+SLPDAVASELGTIKVVWRDCALVGKDFADNYRTY AASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRY+YEGEPWSATLLYRTKDYLEK+GVIPKDMSPEEVAER     XXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEEGEDEG
Sbjct:   89 KIAEKYVPAGDSVIFEGIPTEEGIQELLFSLPRYTTLREKEIGGKSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYEAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYRYEGEPWSATLLYRTKDYLEKVGVIPKDMSPEEVAERRRMRLXXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEEGEDEG 305
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BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Match: D8LLM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM6_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 7.580e-105
Identity = 206/211 (97.63%), Postives = 209/211 (99.05%), Query Frame = 1 
Query:    4 IAEKYVPAGDSVIFEGIPTDEGIQELLFSLPRYATLREKEIGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDMSPEEVAERXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEE 636
            +AEKYVPAGDSVIFEGIPT+EGIQELLFSLPRY TLREKEIGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKD SP+EVAERXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEE
Sbjct:   88 VAEKYVPAGDSVIFEGIPTEEGIQELLFSLPRYTTLREKEIGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDTSPQEVAERXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVSLVDGPPPVAAEE 298
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BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Match: D8LLM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.760e-43
Identity = 84/171 (49.12%), Postives = 120/171 (70.18%), Query Frame = 1 
Query:    1 QIAEKYVPAGDSVIFEGIPTDEGIQELLFSLPRYATLREKE--IGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDMSPEEVAER 507
            +++ K+V AG + +FEGIPT +GIQELLFSLPR+ TL+EK+   GG++L ++  SE+G +K+VW DC   G  F+ +++ Y+  +S+ QANK+DAK TG         + FASTTRAGKV+ +NEARSC V R+   GEPW A LLYRT+ +L+ IGV+  + +  + AER
Sbjct:   89 KVSRKFVRAGGNEVFEGIPTAQGIQELLFSLPRFTTLKEKQGNSGGRALKESGTSEIGAVKIVWNDCVKTGTGFSSHFQEYST-TSFTQANKSDAKATGAGAGGGSSEKAFASTTRAGKVLRLNEARSCTVTRFDTVGEPWEARLLYRTEHHLQDIGVLGTNETAAQEAER 258
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BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Match: D8LLM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.600e-40
Identity = 81/171 (47.37%), Postives = 115/171 (67.25%), Query Frame = 1 
Query:    1 QIAEKYVPAGDSVIFEGIPTDEGIQELLFSLPRYATLREKE--IGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDMSPEEVAER 507
            ++  K+V AG++ +FEGIPT +GIQELLFSLPR+ TL+E++   GG++L  +  SE+G +K+VW DC   GK  +  +R Y+  +S+ QANK+DAK TG         + FASTTRAGKVI +NE +SC V+ Y   G+PW A LLYRT+ +L+ IGV+    +  +  ER
Sbjct:   89 KVCRKHVRAGENQVFEGIPTAKGIQELLFSLPRFTTLKEQQGNSGGRALKKSRTSEIGVVKIVWNDCVKTGKRSSSRHRKYST-TSFTQANKSDAKATGAGAGGGSSEKAFASTTRAGKVIRLNEPKSCTVSTYHNVGKPWEARLLYRTEHHLQDIGVLGTSETAAQEIER 258
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BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Match: D8LLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.640e-20
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:  124 IGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXXXXEKFASTTRAG 348
            + G+SLPDA+A E+GTIK+VWRDC  VGK+F+DN R YA  SSYKQANKTDA  TGGAG        F+STT  G
Sbjct:    1 MSGKSLPDAIAREIGTIKIVWRDCVKVGKEFSDNCREYATVSSYKQANKTDAVATGGAGTGAGEGMSFSSTTSCG 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15348.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPC9_9PHAE5.160e-10994.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM6_ECTSI7.580e-10597.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM5_ECTSI1.760e-4349.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM2_ECTSI4.600e-4047.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM7_ECTSI2.640e-2062.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15348contigEcto-sp13_S_contig15348:60..3925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score337.0
Seed ortholog evalue6.4e-90
Seed eggNOG ortholog2880.D8LLM6
Model size2316
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2ERJ9@1,2SUBW@2759
Cds size654
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.793315-CDS-Ecto-sp13_S_contig15348:59..1571681462816.793315-CDS-Ecto-sp13_S_contig15348:59..157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15348 60..157 +
1681462816.8040023-CDS-Ecto-sp13_S_contig15348:515..6291681462816.8040023-CDS-Ecto-sp13_S_contig15348:515..629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15348 516..629 +
1681462816.8133466-CDS-Ecto-sp13_S_contig15348:1271..14001681462816.8133466-CDS-Ecto-sp13_S_contig15348:1271..1400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15348 1272..1400 +
1681462816.8218699-CDS-Ecto-sp13_S_contig15348:1950..22631681462816.8218699-CDS-Ecto-sp13_S_contig15348:1950..2263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15348 1951..2263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.8311057-UTR-Ecto-sp13_S_contig15348:2263..39251681462816.8311057-UTR-Ecto-sp13_S_contig15348:2263..3925Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15348 2264..3925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15348.4019.1prot_Ecto-sp13_S_contig15348.4019.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15348 60..2263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15348.4019.1

>prot_Ecto-sp13_S_contig15348.4019.1 ID=prot_Ecto-sp13_S_contig15348.4019.1|Name=mRNA_Ecto-sp13_S_contig15348.4019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
QIAEKYVPAGDSVIFEGIPTDEGIQELLFSLPRYATLREKEIGGQSLPDA
VASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAG
AGAGEGEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDY
LEKIGVIPKDMSPEEVAERRRKRLARRKRRKLQEEAAAGGAFVPPPVPVS
LVDGPPPVAAEEGEDEG*
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mRNA from alignment at Ecto-sp13_S_contig15348:60..3925+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15348.4019.1 ID=mRNA_Ecto-sp13_S_contig15348.4019.1|Name=mRNA_Ecto-sp13_S_contig15348.4019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3866bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15348:60..3925+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGCGGAAAAGTATGTACCCGCCGGCGACAGCGTCATTTTTGAGGG
AATCCCTACAGATGAGGGTATCCAAGAGCTGCTGTTTTCCCTGCCCAGGT
GTGTAGCAACCCTATGTGAATGAAATGCACACGCGATTGGCGCCCACATT
GCGGTTCTTCAATGTTTTTTCGGCACGACGATGAATTGTTCAGGATGAGT
ACGGCGGCCAAGCAACTTTAGATGGACCACTAAAGACCACTTGCTCGTGC
TCTATTTGTTCGCTTGTCCTTCTGTTTGCTGTGCACTACACACGTGGTTC
ACTCGTTGCAGAAAGGAGACGGTGGATGATGCGCTACCACGATGATGAAC
ACGCCATGTTGGAAGGCACGGCGGTTGAAGTAGTCGCAAACAAAACCTGG
CCTGCCTCTGTTCTCACTTGCTTGAGCTCGTTATTTTTTGCCTCCCCGCG
CGGAAGGTACGCCACCCTGAGGGAAAAAGAAATCGGTGGACAGTCGCTGC
CGGACGCAGTAGCGAGCGAGCTCGGGACGATAAAGGTCGTGTGGCGCGAC
TGCGCCTTGGTCGGCAAAGAGTGAGTGGTTTATTTTGTTGTTTAGGTAGC
TCGTCAAGCACACCCACACCGGCGCAGATGGCGACGGTGTACAGACTACA
AGGATACAGACCCGTTTTGCTCTACAGGCTGGCAATTTGTGAAGTTTCCT
CTGCTCTCGTCGATTGTGAGAGGCAGGAAGTAGCACCCGCCCTTCCCTCT
TCGCCGCTTTGTTGCGGTGACGGAAAATACAGCAGAGGATACGGATGCCA
CTGGTGCTGGACCCCATGGTATCTCAGGTAGCCAACCTGGCCTGGTAGGT
GTTGTGCAGAAGCGATCCCGGGGCAGCTCTCCTTCCCCTTTGAAGCTAGA
CGTGCCTTACCGACACCGACAGCATTGTGTAGCTTGTGGTCGGAAACGAC
GGCGGCTGTCTTGGTTTTGTCTCCGAATGGCGATGTTGCTGAAGTTGGAA
CAGCTCCCCCCATCGCCGCAAACTTGCACAATGAACTGCACGGTTCTCCT
TCTGTATGTAGTGTCGCTTGTTTCCCTGCGTGTCTGTGTCCCCGGCGAGT
TTACCTTTCGTGGGGTACGGAAGTAGTGTAACGCTACCTTCGTTCTCTAC
GCTGTTCTGCTTGTCTCTCTCTCCACCCCATCGACTCCCCCCTCTCTCTC
TCTCTCTCCCAGTTTCGCGGACAACTACCGGACGTACGCAGCGGCGAGCT
CCTACAAGCAGGCCAACAAGACGGACGCCAAACGCACTGGAGGTGCAGGG
GCGGGAGCCGGGGAGGGAGAGAAGTTCGCATCTACCACAAGGTTAGCAAC
GAAACGAACATATGGGGTGCCCACTTTTCCCGCTTTTTCCCGTACGCATC
GTGGGACAATAGAGGAAGAGCTGCGTTAAGCGTGGTTCCTTTTCCTCTCC
GATTGCGACGGCCATGGTGGCGGACGTTGTGTTCGTGGTTACGGGGGATA
CCATACGCTTCTGTCAGGCGTTCCCGGCGTGATTATGGTGGTGAATTTTT
CGGGAATGGCTAGGGTAACTACCACCAGAGGCTTTGCAGAGTACCGCGGA
GTTTATCACAACGAGTGTGGTATCTTCACAACAAGTGTGGTATCTCCCGC
CACTACCGTCACCATGGCTGTTCGTCACCCCACGTCCCGCGCCACCGTCG
TTGCCGCGACCGGAGCCATGCGCGAGGAAAGCACATAGTCGCACGCCCAG
TCTTATCGTTTGCTTCGTTGGCGTCGACTCTCACGTCACATCATTCCACC
CGCAGAAGTCCGCCGCTGTCGCGCGTCTCGGGCGACGGTTTCAATGCTCT
TCTGATTTTTTGTCCCCTCTATTTTGTTCTTCCTCAAACAGGGCGGGCAA
GGTGATCGGGATGAACGAAGCCAGATCCTGTGTCGTGAACAGGTACCAGT
ACGAAGGGGAGCCGTGGTCGGCGACCCTTCTGTACCGTACGAAAGACTAC
CTCGAGAAGATAGGTGTGATACCCAAGGATATGAGCCCGGAGGAAGTCGC
GGAGCGGAGGAGGAAGAGACTCGCACGGCGCAAGAGGCGCAAGCTGCAGG
AAGAGGCGGCGGCGGGGGGAGCCTTCGTTCCCCCACCAGTCCCGGTGTCT
CTGGTGGACGGGCCGCCTCCGGTAGCCGCCGAGGAAGGCGAGGACGAGGG
TTGAAATCAGAACCGGGAGACATAGTGGATGACGAGAGAGCTTGGTTTCT
TGGTTGGAGGCTGAACCGGGACCGATTAATGAGCAGCAGCAGCTGCGGCA
GGGATCGCAGGGAAGAGCTGTGGAACCAGGACTGCTGAACAGCACCAAGA
GCCACACCTGCAGCACGAGAGTCAGGAAGAAGGTGCTTGATATTTGAAGT
TGAAACAACGTTAGTTGACCGGGAGCAACAGCGGCAGCAGCGGGAGAGGG
GCAGAGATTGTTCGTGGCAATCTTGCGAGAGCCGAAATGTAGTGGGAGAA
TCGAAAAGTAGAGCAAGCATAGAGCGATTGCGAGATCAAACGGGTGCTTG
CTACAAGAAGGAGTTTTTCGGAGGGCGGGAGAGACACCAACTTCATCCGG
CTTCGTCTCCGTTGGTTGTTACGAAGGTCGCATCCTGCACCCACCACTTG
CCTCCATATCCCGCCGGCGAGAAACGGGGAAGGAAGTCGGTTGGGGGACT
GCAGTAGACGGGGCTTGCTGCCTGATATCCCGGCCGGGCTTGTAGCCTAT
TCGACGTTGTGGGGCAGGGTCGTGCTCTGTCAAGTTATTGCTGTCGGGAA
ATTCTTGGCTTTTGTACGATTTGCTGTGTCCGTTGGCGTGAAGTTGGGGC
TCGTCTCTCTCTCCAGGTGTGTCTGGACTTGCAGTGTACCAGGGGGTACG
CCGGGCATTATGCTCCACTCTCCTTGAACTCGGAGGGAATGCTCTTGGTC
GTTCGTCTGATCGCGTCTTAATCTTGAGTCTGGCGCCCTCGGTACCTTGA
TAGCTCTCGCGAAGAGGCTCGTGTGGGTCGGACAAGAGACCGATCTGTTC
GAGTCACGTAAAGTAAGTTCTTCTGGCCAGGCGCCGAGCTTGCGCGCGTG
CTCAACGCATAGTCTAGCGGTAAGACTTGGCTTTTTCGTCGCTCACCTTC
TGTGGTCGATGCCCCCGTACTCGCGCTGTGTGTCGCATTCGGTGGTACCC
ACTAATCTCAGCGCGCATGGCATCTACACTACTTGGCTTTGGAAGAAGAC
ACGTACTATGTGTGGTGCAGTGTTCCCTGGATGGCCACGACCCGGTTCGG
AACAAAGAAGATTTTCGCACATGTTTCGTGTTATCCTCGCTGAAAATCGT
CCGAAAGCTGTTTCTCAACTTTCGTTGGGATGGGGTTGCCAAAGGACGGT
GTTGTCGTGCGCGTTCTTGTTTAGCTAGCTAGCTCCACTTTTTCGTTTGA
CGGTCGACGATTTGGGTTAAAGTGTGTGTACGTTGTGCAGTTGTTTTCTG
TAGTTGTCACCAAGCAACACATTGTGTGGGAGCGCCCCTCGTAGGCTTGA
AAGGTGACAGCCAAGTGTCTCTGTTCTGCCGCTTGCACCTTCTTCAATGA
CGGTTCGAAGGAGGCGGCGCCGCGGCAATCCTTTTAGTCAGTCGAGAGCC
GTATCTGTGGGTGTGTCTTTCTAGCGTTCAAGATTTGAACTCATGACTAC
CTAGATCATTTCCCCCCCCCTCGTAGTCTGAGGGTCCCCATTATTGCGGC
GCCACCAGAGGACGATCGTGTCACGAGAGCCGACGAAGTTGGTGTTTGTG
CCGCAAATTGCGTCACCAAGTGTTCCTTCGTATACGTGTCTGTTCTGCAC
GCGTTGGGAAGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15348:60..3925+

>mRNA_Ecto-sp13_S_contig15348.4019.1 ID=mRNA_Ecto-sp13_S_contig15348.4019.1|Name=mRNA_Ecto-sp13_S_contig15348.4019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15348:60..3925+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGCGGAAAAGTATGTACCCGCCGGCGACAGCGTCATTTTTGAGGG
AATCCCTACAGATGAGGGTATCCAAGAGCTGCTGTTTTCCCTGCCCAGGT
ACGCCACCCTGAGGGAAAAAGAAATCGGTGGACAGTCGCTGCCGGACGCA
GTAGCGAGCGAGCTCGGGACGATAAAGGTCGTGTGGCGCGACTGCGCCTT
GGTCGGCAAAGATTTCGCGGACAACTACCGGACGTACGCAGCGGCGAGCT
CCTACAAGCAGGCCAACAAGACGGACGCCAAACGCACTGGAGGTGCAGGG
GCGGGAGCCGGGGAGGGAGAGAAGTTCGCATCTACCACAAGGGCGGGCAA
GGTGATCGGGATGAACGAAGCCAGATCCTGTGTCGTGAACAGGTACCAGT
ACGAAGGGGAGCCGTGGTCGGCGACCCTTCTGTACCGTACGAAAGACTAC
CTCGAGAAGATAGGTGTGATACCCAAGGATATGAGCCCGGAGGAAGTCGC
GGAGCGGAGGAGGAAGAGACTCGCACGGCGCAAGAGGCGCAAGCTGCAGG
AAGAGGCGGCGGCGGGGGGAGCCTTCGTTCCCCCACCAGTCCCGGTGTCT
CTGGTGGACGGGCCGCCTCCGGTAGCCGCCGAGGAAGGCGAGGACGAGGG
TTGA
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