mRNA_Ecto-sp13_S_contig15342.4015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15342.4015.1
Unique NamemRNA_Ecto-sp13_S_contig15342.4015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15342.4015.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.360e-25
Identity = 63/83 (75.90%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    1 AVDGSIIFGF-YSFDFGQYGSDPYGTTLTGGAGAAVIATVAAGDAAGNTDSCSFLMMLWPEGTPLPTDEPVSTXXXXXEPVAP 246
            AVDGS +  + Y F  GQ GSD Y  +L GGAG  VIATV A DAAGNTDSCSFLMMLWPEGTPLPTDEPVSTXXXX EPVAP
Sbjct:   72 AVDGSNVIDYLYPFHIGQSGSDLYTISLMGGAGTEVIATVTAFDAAGNTDSCSFLMMLWPEGTPLPTDEPVSTXXXXPEPVAP 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15342.4015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8U9_9PHAE4.360e-2575.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15342contigEcto-sp13_S_contig15342:2765..4187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size283
Hectar predicted targeting categoryother localisation
Exons3
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.5818744-CDS-Ecto-sp13_S_contig15342:2764..29481681462816.5818744-CDS-Ecto-sp13_S_contig15342:2764..2948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15342 2765..2948 +
1681462816.5940166-CDS-Ecto-sp13_S_contig15342:3304..33571681462816.5940166-CDS-Ecto-sp13_S_contig15342:3304..3357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15342 3305..3357 +
1681462816.6039271-CDS-Ecto-sp13_S_contig15342:4143..41851681462816.6039271-CDS-Ecto-sp13_S_contig15342:4143..4185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15342 4144..4185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15342.4015.1prot_Ecto-sp13_S_contig15342.4015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15342 2765..4185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15342.4015.1

>prot_Ecto-sp13_S_contig15342.4015.1 ID=prot_Ecto-sp13_S_contig15342.4015.1|Name=mRNA_Ecto-sp13_S_contig15342.4015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
AVDGSIIFGFYSFDFGQYGSDPYGTTLTGGAGAAVIATVAAGDAAGNTDS
CSFLMMLWPEGTPLPTDEPVSTPQPTPEPVAPTPEPIVPTPEP
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mRNA from alignment at Ecto-sp13_S_contig15342:2765..4187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15342.4015.1 ID=mRNA_Ecto-sp13_S_contig15342.4015.1|Name=mRNA_Ecto-sp13_S_contig15342.4015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15342:2765..4187+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTCGATGGGTCCATCATCTTCGGGTTCTACTCTTTCGATTTTGGGCA
ATATGGCAGTGACCCTTACGGCACCACCCTCACGGGCGGAGCTGGTGCTG
CGGTGATCGCCACCGTCGCCGCCGGCGATGCGGCGGGCAACACGGACAGC
TGCTCCTTCTTGATGATGCTATGGCCAGAAGGAAGTAAGTTGAAGAAACG
ATCGAAAAATGTAAAGGACGCTACGAGAATAAGAGGGCCGTGGGAGCCGA
GTTGGAATGAATCGCGGTTTCCTGTGGTGCGGCACAACGTATTTACAGGG
TTCGGAAGCACTGAAGAAAGTGATTGGGTAGGGTCAAGTCAGACTGATCG
ATCGTGTTCGTTCCGAGACGCCTGTCACGTACTCAAAGGTGCGAGAGACA
ACATCGGCGTGGACGGATACTCACATCTCCATAATTTGTGTTGTTTTGAC
ATGTTCCATCTTACTCGATCCCGCAATTGATGACACCTGCGCGTACCGCC
TCGATATCGTGTTCACCTGATGTTCTTCGGCTCCGCACAGCCCCGCTTCC
TACCGACGAGCCTGTGTCTACCCCACAGCCCACGCCAGAGCCGGTAAGCC
CTACTGAAACCTACGGTTCAAGGTAGGAGTATCACAATAGTTTCCACTTC
TCGGTTGGCAAGACGTACACAGCTTTTGAGTCTGCGTCGCTCAGAGGCCT
ACGTCTTGATGCTGCATTAGGCAAGACATGTGTAGATACCCTTCTTCGGG
GAACAATGACATGAGGTGGTAAAGGTGCTTCAATGTGTCGTTACCCCGGC
AAGGCGCCCCCCTCCGTTCGGGCCAATGCACACGAGGTGGTCGCCTTGAC
TTGCTATGAGACACCGATATCTGGTTGTTGCGAGTTCATCGGCCCGCGCG
TCGTCTCTTCTCCCACTTTGTTCAACCTACTACCGAACGTAAGATTATGT
TGATGCAACCGCCTGCATCCGCTTTTGCAGCTTCCACGAGAATTTGGGAG
GATGAGGATCCAATTATTTCGACAATCCGTGACGAGTTGCTGCATGCACC
CACATCTGGCGTAATAGATTGCTGTGCAACGGTCGCCGCAACTATTGCCT
TATTTTCTCGTCGTGGCTTTGTTGGTCCCTTTTCTGCACGCTGCTTACGT
TGTCCCGACACCCGGACCCTTGGCTCCCACCCTCGAACCGGTACATCTCT
AGGCGATAGTCTTCCTGTACTGGAACCCACCAATAACAACCAAAACCAAC
CCACGTTCGGCAACTAACCACGCGTGCGTGCTGACGGTCCTCAAGCAGGG
CGACACGATATATGTTACGAGGTTGAGTCGTTGACGCAACTCTTCACTTT
ATTCTCTGTGTGCTGTTAAATGCTGTCAGGTCGCGCCGACACCCGAGCCC
ATCGTGCCAACCCCTGAACCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15342:2765..4187+

>mRNA_Ecto-sp13_S_contig15342.4015.1 ID=mRNA_Ecto-sp13_S_contig15342.4015.1|Name=mRNA_Ecto-sp13_S_contig15342.4015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15342:2765..4187+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTCGATGGGTCCATCATCTTCGGGTTCTACTCTTTCGATTTTGGGCA
ATATGGCAGTGACCCTTACGGCACCACCCTCACGGGCGGAGCTGGTGCTG
CGGTGATCGCCACCGTCGCCGCCGGCGATGCGGCGGGCAACACGGACAGC
TGCTCCTTCTTGATGATGCTATGGCCAGAAGGAACCCCGCTTCCTACCGA
CGAGCCTGTGTCTACCCCACAGCCCACGCCAGAGCCGGTCGCGCCGACAC
CCGAGCCCATCGTGCCAACCCCTGAACCG
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