mRNA_Ecto-sp13_S_contig15331.4008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15331.4008.1
Unique NamemRNA_Ecto-sp13_S_contig15331.4008.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15331.4008.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.790e-54
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = -3 
Query:    2 APVSAAAVRAKAVADALLKEAQAATAAYHTKERAIVEIATRQKRAEAGRAELVRETQYASDSASKASQAAMHYEQVARVKRGEEKAALERVSRAEWESKNAADKALQLAALERRQLAFP 358
            APVSAAAVRAKAVADALLKEAQAATAAYHTKERAIVEIATRQKRAEAGRAELVRETQYASDSASKASQAAMHYEQVARVKRGEEKAALERVSRAEWESKNAADKALQLA LERRQLAFP
Sbjct: 1931 APVSAAAVRAKAVADALLKEAQAATAAYHTKERAIVEIATRQKRAEAGRAELVRETQYASDSASKASQAAMHYEQVARVKRGEEKAALERVSRAEWESKNAADKALQLAGLERRQLAFP 2049
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15331.4008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE4.790e-5499.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15331contigEcto-sp13_S_contig15331:1034..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size407
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.0869317-CDS-Ecto-sp13_S_contig15331:1033..13691681462816.0869317-CDS-Ecto-sp13_S_contig15331:1033..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15331 1034..1369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462816.0974715-UTR-Ecto-sp13_S_contig15331:1369..14381681462816.0974715-UTR-Ecto-sp13_S_contig15331:1369..1438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15331 1370..1438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15331.4008.1prot_Ecto-sp13_S_contig15331.4008.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15331 1034..1369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15331.4008.1

>prot_Ecto-sp13_S_contig15331.4008.1 ID=prot_Ecto-sp13_S_contig15331.4008.1|Name=mRNA_Ecto-sp13_S_contig15331.4008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
PETRAACARAPLAAGPCRQRSWTPTPPGRRARGPPSLPRASRGPPARSAS
PPGTPCWPSPTRTGSRARAPPARPPPASASSRSRRWPAPWCGMPQSRPGP
PSAARRRRPSP*
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mRNA from alignment at Ecto-sp13_S_contig15331:1034..1438+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15331.4008.1 ID=mRNA_Ecto-sp13_S_contig15331.4008.1|Name=mRNA_Ecto-sp13_S_contig15331.4008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15331:1034..1438+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAAACGCGAGCTGCCTGCGCTCGAGCGCCGCTAGCTGCAGGGCCTTG
TCGGCAGCGTTCTTGGACTCCCACTCCGCCCGGGAGACGCGCTCGAGGGC
CGCCTTCTCTTCCCCGCGCTTCACGCGGGCCACCTGCTCGTAGTGCATCG
CCGCCTGGGACGCCTTGCTGGCCGAGTCCGACGCGTACTGGGTCTCGCGC
ACGAGCTCCGCCCGCCCGGCCTCCGCCCGCTTCTGCCTCGTCGCGATCTC
GACGATGGCCCGCTCCTTGGTGTGGTATGCCGCAGTCGCGGCCTGGGCCT
CCTTCAGCAGCGCGTCGGCGACGGCCTTCGCCCTGACCGCCGCCGCTGAG
ACGGGGGCGGCGGCGGCGTTGGCGTCACCGCCGGCGGGGGAGGAAAGATT
GCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15331:1034..1438+

>mRNA_Ecto-sp13_S_contig15331.4008.1 ID=mRNA_Ecto-sp13_S_contig15331.4008.1|Name=mRNA_Ecto-sp13_S_contig15331.4008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15331:1034..1438+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGAAACGCGAGCTGCCTGCGCTCGAGCGCCGCTAGCTGCAGGGCCTTG
TCGGCAGCGTTCTTGGACTCCCACTCCGCCCGGGAGACGCGCTCGAGGGC
CGCCTTCTCTTCCCCGCGCTTCACGCGGGCCACCTGCTCGTAGTGCATCG
CCGCCTGGGACGCCTTGCTGGCCGAGTCCGACGCGTACTGGGTCTCGCGC
ACGAGCTCCGCCCGCCCGGCCTCCGCCCGCTTCTGCCTCGTCGCGATCTC
GACGATGGCCCGCTCCTTGGTGTGGTATGCCGCAGTCGCGGCCTGGGCCT
CCTTCAGCAGCGCGTCGGCGACGGCCTTCGCCCTGA
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