mRNA_Ecto-sp13_S_contig15323.4004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15323.4004.1
Unique NamemRNA_Ecto-sp13_S_contig15323.4004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Match: D7FN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN61_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.590e-26
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLKV 153
            L VGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLK+
Sbjct:  249 LTVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLKL 299
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BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Match: A0A8J2X1K1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1K1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.620e-6
Identity = 19/41 (46.34%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYD 123
            + VGD +DA+DS+G W  +++V IEG+ ++VH+ G+ SR+D
Sbjct:    1 MAVGDVIDAKDSEGRWFDSRIVAIEGDRVKVHYNGWSSRWD 41
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BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Match: A0A7S3UR43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR43_HETAK)

HSP 1 Score: 50.1 bits (118), Expect = 1.510e-5
Identity = 18/51 (35.29%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLKV 153
            LKVGD LDA DSDG W  + ++  +G+ +++H++G+ +++D  +  +S  +
Sbjct:   30 LKVGDLLDACDSDGRWFESVIIEAKGKKVKIHYKGWDTKWDMYVDAKSEDI 80
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BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Match: A0A8J2SNQ1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNQ1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.270e-5
Identity = 19/52 (36.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDE--DIRVESLK 150
            ++VGD +DA+DS+G W  +++V ++ + ++VH+ G+ SR+D   D + ES++
Sbjct:  272 IRVGDVIDAKDSEGRWFDSRIVEVDRDRVKVHYNGWSSRWDSWVDRKDESIQ 323
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BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Match: A0A7S1UKX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UKX0_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.480e-5
Identity = 19/45 (42.22%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIR 135
            L+VGD+ DA+D  GTW  + V ++E +++ VH+ G+ SR+D  +R
Sbjct:   52 LQVGDFCDAQDVTGTWYESIVRKVEDDTVTVHYMGWASRWDTQVR 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15323.4004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FN61_ECTSI1.590e-2696.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2X1K1_9STRA1.620e-646.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3UR43_HETAK1.510e-535.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SNQ1_9STRA2.270e-536.54Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pela... [more]
A0A7S1UKX0_9STRA5.480e-542.22Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15323contigEcto-sp13_S_contig15323:260..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.8687696-CDS-Ecto-sp13_S_contig15323:259..4421681462815.8687696-CDS-Ecto-sp13_S_contig15323:259..442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15323 260..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15323.4004.1prot_Ecto-sp13_S_contig15323.4004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15323 260..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15323.4004.1

>prot_Ecto-sp13_S_contig15323.4004.1 ID=prot_Ecto-sp13_S_contig15323.4004.1|Name=mRNA_Ecto-sp13_S_contig15323.4004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
LKVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLK
VCSRKYMCRA*
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mRNA from alignment at Ecto-sp13_S_contig15323:260..442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15323.4004.1 ID=mRNA_Ecto-sp13_S_contig15323.4004.1|Name=mRNA_Ecto-sp13_S_contig15323.4004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15323:260..442+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAAGGTGGGCGACTGGTTGGACGCCCGCGATAGCGACGGGACCTGGTG
TGTCGCCCAGGTGGTGCGGATAGAGGGAGAGTCGATGCGAGTGCACTTCC
AGGGGTACCACTCGAGATACGACGAAGACATCCGGGTGGAGTCTTTGAAG
GTATGCAGTCGAAAATATATGTGCAGGGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15323:260..442+

>mRNA_Ecto-sp13_S_contig15323.4004.1 ID=mRNA_Ecto-sp13_S_contig15323.4004.1|Name=mRNA_Ecto-sp13_S_contig15323.4004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15323:260..442+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAAGGTGGGCGACTGGTTGGACGCCCGCGATAGCGACGGGACCTGGTG
TGTCGCCCAGGTGGTGCGGATAGAGGGAGAGTCGATGCGAGTGCACTTCC
AGGGGTACCACTCGAGATACGACGAAGACATCCGGGTGGAGTCTTTGAAG
GTATGCAGTCGAAAATATATGTGCAGGGCGTGA
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