mRNA_Ecto-sp13_S_contig15311.3994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15311.3994.1
Unique NamemRNA_Ecto-sp13_S_contig15311.3994.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 6.100e-124
Identity = 195/198 (98.48%), Postives = 196/198 (98.99%), Query Frame = 2 
Query:    2 SGTALVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            SG ALVPGGEDVDVTLDNVGEFVEAVTSRWLHAG LPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEM+PAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD
Sbjct: 1701 SGAALVPGGEDVDVTLDNVGEFVEAVTSRWLHAGTLPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMSPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 1898
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A836CNJ7_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ7_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.270e-69
Identity = 119/192 (61.98%), Postives = 143/192 (74.48%), Query Frame = 2 
Query:   26 GEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGA--FALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            GE   VT  NV  FV  +  +WL  G++PQA+AF AGCAE FP   LR+ SA EL DQLCG+E L+W LE+L+  V PGAGYTRNS+PF   L CLS+M    KR FLLFVLGCP LPPGGL GL+PPLEVSR+Q  G A  FA E++++R+LPFARTCTHTLHLPPYS +  L EKL YA++NS+ +IDRD
Sbjct:  449 GEAPAVTPANVHHFVGELLLKWLGYGVVPQAQAFVAGCAEAFPARKLRAFSAAELRDQLCGQEPLDWPLEYLEAVVSPGAGYTRNSEPFRALLHCLSDMDLPTKRRFLLFVLGCPRLPPGGLGGLTPPLEVSRRQQGGFASSFASEEQVNRDLPFARTCTHTLHLPPYSNQATLLEKLIYAMDNSRDIIDRD 640
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A0W8BWA6_PHYNI (E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BWA6_PHYNI)

HSP 1 Score: 187 bits (474), Expect = 7.370e-52
Identity = 96/194 (49.48%), Postives = 126/194 (64.95%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            LV GG+D+ VT  N+  +V AV   WL +GI  Q +AFR G +EV PV  LR L   EL   LCGEE +EW++E L +      GYT++SQP   F   L EM+ A++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL +++ +AI NS+GVIDRD
Sbjct:  197 LVTGGDDIAVTASNLTLYVRAVLELWLDSGIRAQVQAFREGISEVLPVGKLRLLFVPELISLLCGEEDIEWNVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSAAERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSSKDVLVKQMTFAIANSRGVIDRD 384
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A8J5IHB2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IHB2_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.430e-48
Identity = 98/195 (50.26%), Postives = 126/195 (64.62%), Query Frame = 2 
Query:   11 ALVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            +LV GG+DV VT  N+  +V AV   WL +GI  Q  AFR G +EV PV  LR L   EL   LCGEE +EW++E L +      GYT++SQP   F   L EM+  ++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL ++LA+AI NS+GVIDRD
Sbjct:  839 SLVAGGDDVAVTASNLTLYVRAVLELWLDSGIRAQVLAFREGISEVLPVGKLRLLFVPELISLLCGEEDIEWNVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSATERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDSLDVDRALPFARTCTNTLHLPAYSSKDVLAKQLAFAIANSRGVIDRD 1027
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A0W8DSG5_PHYNI (Glutathione reductase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSG5_PHYNI)

HSP 1 Score: 187 bits (474), Expect = 1.780e-48
Identity = 96/194 (49.48%), Postives = 126/194 (64.95%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            LV GG+D+ VT  N+  +V AV   WL +GI  Q +AFR G +EV PV  LR L   EL   LCGEE +EW++E L +      GYT++SQP   F   L EM+ A++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL +++ +AI NS+GVIDRD
Sbjct: 1265 LVTGGDDIAVTASNLTLYVRAVLELWLDSGIRAQVQAFREGISEVLPVGKLRLLFVPELISLLCGEEDIEWNVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSAAERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSSKDVLVKQMTFAIANSRGVIDRD 1452
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: W2QZZ5_PHYPN (HECT-type E3 ubiquitin transferase n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZZ5_PHYPN)

HSP 1 Score: 187 bits (474), Expect = 2.010e-48
Identity = 96/194 (49.48%), Postives = 126/194 (64.95%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            LV GG+D+ VT  N+  +V AV   WL +GI  Q +AFR G +EV PV  LR L   EL   LCGEE +EW++E L +      GYT++SQP   F   L EM+ A++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL +++ +AI NS+GVIDRD
Sbjct: 2533 LVTGGDDIAVTASNLTLYVRAVLELWLDSGIRAQVQAFREGISEVLPVGKLRLLFVPELISLLCGEEDIEWNVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSAAERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSSKDVLVKQMTFAIANSRGVIDRD 2720
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A2P4WYR6_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYR6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.170e-48
Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            LV  GE++ VT +N+  +V AV   WL +GI  Q  AFR G ++V P+  LR L   EL   LCGEE ++W +E L +      GYT++SQP   F   L EM+  ++RSFLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS + VL +++A+AI NS+GVIDRD
Sbjct:  191 LVIDGENIAVTTNNLMLYVRAVLEMWLDSGIHAQVLAFREGISDVLPLGKLRLLFVPELLSLLCGEEDIKWDMESLMKDTKLAHGYTKDSQPVQFFFEVLDEMSVTERRSFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSSKAVLAKQMAFAIANSRGVIDRD 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A329T035_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T035_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.300e-47
Identity = 97/195 (49.74%), Postives = 125/195 (64.10%), Query Frame = 2 
Query:   11 ALVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            +LV GG+DV VT  N+  +V AV   WL +GI  Q  AFR G +EV PV  LR L   EL   LCGEE + W++E L +      GYT++SQP   F   L EM+  ++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL ++LA+AI NS+GVIDRD
Sbjct: 2539 SLVAGGDDVAVTASNLTLYVRAVLELWLDSGIRAQVLAFREGISEVLPVGKLRLLFVPELISLLCGEEDIGWNVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSATERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSSKDVLVKQLAFAIANSRGVIDRD 2727
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: D0N7K1_PHYIT (HECT-type E3 ubiquitin transferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7K1_PHYIT)

HSP 1 Score: 182 bits (461), Expect = 1.050e-46
Identity = 95/194 (48.97%), Postives = 124/194 (63.92%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            LV GG+D+ VT DN+  +V AV   WL +GI  Q  AFR G +EV  V  LR L   EL   LCGEE ++W +E L +      GYT++SQP   F   L EM+ A++R+FLL+  GCP+LPPGG   L PP EV R+           ++DR LPFARTCT+TLHLP YS ++VL ++L +A+ NS+GVIDRD
Sbjct: 2363 LVVGGDDIAVTADNLPLYVRAVLELWLDSGIRAQVLAFREGISEVLSVGKLRLLFVPELISLLCGEEDIKWDVESLVKDTKLAHGYTKDSQPVQFFFEALEEMSAAERRAFLLYATGCPNLPPGGFQALKPPFEVVRR------VVDNLDVDRALPFARTCTNTLHLPAYSTKDVLVKQLTFAVANSRGVIDRD 2550
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Match: A0A8K1FNU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU8_PYTOL)

HSP 1 Score: 182 bits (461), Expect = 1.050e-46
Identity = 91/194 (46.91%), Postives = 123/194 (63.40%), Query Frame = 2 
Query:   14 LVPGGEDVDVTLDNVGEFVEAVTSRWLHAGILPQAEAFRAGCAEVFPVHMLRSLSAQELHDQLCGEEALEWSLEHLKEAVVPGAGYTRNSQPFCDFLACLSEMTPAKKRSFLLFVLGCPHLPPGGLCGLSPPLEVSRKQGAGGAFALEDEIDRELPFARTCTHTLHLPPYSKREVLNEKLAYAIENSQGVIDRD 595
            L  GG++ +VT+ NV  +VE V   WLH GI  Q +AFR G +EV P+  L+ L   EL   LCG+  ++W +E LK+++    GYT+ S     F+  L EMT A++R FLL+  GCP+LP GG   L PP EV R+          D +D+ LPFARTCT+TLHLP YS ++V+ E++ YAI NS+GVIDRD
Sbjct: 2378 LEDGGDEKEVTVGNVVAYVEKVKGLWLHRGIEAQVDAFREGISEVLPLEKLKLLFVPELLSMLCGDADIDWDMESLKKSMKLAHGYTKESAAVEYFVEVLDEMTVAERREFLLYATGCPNLPAGGFAALRPPFEVVRR------VVDNDNVDQALPFARTCTNTLHLPAYSSKDVMAERMRYAIGNSRGVIDRD 2565
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15311.3994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBS8_ECTSI6.100e-12498.48HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CNJ7_9STRA1.270e-6961.98HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A0W8BWA6_PHYNI7.370e-5249.48E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phytophth... [more]
A0A8J5IHB2_9STRA1.430e-4850.26Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A0W8DSG5_PHYNI1.780e-4849.48Glutathione reductase n=1 Tax=Phytophthora nicotia... [more]
W2QZZ5_PHYPN2.010e-4849.48HECT-type E3 ubiquitin transferase n=10 Tax=Phytop... [more]
A0A2P4WYR6_9STRA4.170e-4847.94HECT E3 ubiquitin ligase n=1 Tax=Phytophthora palm... [more]
A0A329T035_9STRA2.300e-4749.74HECT-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
D0N7K1_PHYIT1.050e-4648.97HECT-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
A0A8K1FNU8_PYTOL1.050e-4646.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15311contigEcto-sp13_S_contig15311:418..4198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1187
Hectar predicted targeting categoryother localisation
Exons6
Cds size711
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15311.3994.1prot_Ecto-sp13_S_contig15311.3994.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15311 893..4198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.1310272-UTR-Ecto-sp13_S_contig15311:417..8921681462815.1310272-UTR-Ecto-sp13_S_contig15311:417..892Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15311 418..892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.139506-CDS-Ecto-sp13_S_contig15311:892..10981681462815.139506-CDS-Ecto-sp13_S_contig15311:892..1098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 893..1098 -
1681462815.1497962-CDS-Ecto-sp13_S_contig15311:1741..18311681462815.1497962-CDS-Ecto-sp13_S_contig15311:1741..1831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 1742..1831 -
1681462815.1589954-CDS-Ecto-sp13_S_contig15311:2301..24301681462815.1589954-CDS-Ecto-sp13_S_contig15311:2301..2430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 2302..2430 -
1681462815.1691558-CDS-Ecto-sp13_S_contig15311:2995..31271681462815.1691558-CDS-Ecto-sp13_S_contig15311:2995..3127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 2996..3127 -
1681462815.1842875-CDS-Ecto-sp13_S_contig15311:3702..37691681462815.1842875-CDS-Ecto-sp13_S_contig15311:3702..3769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 3703..3769 -
1681462815.1958127-CDS-Ecto-sp13_S_contig15311:4111..41981681462815.1958127-CDS-Ecto-sp13_S_contig15311:4111..4198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15311 4112..4198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15311.3994.1

>prot_Ecto-sp13_S_contig15311.3994.1 ID=prot_Ecto-sp13_S_contig15311.3994.1|Name=mRNA_Ecto-sp13_S_contig15311.3994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
VGDGACPRGGGRRRDAGQRRRVRGGGNIKVAARRDPAAGRSVPRWLRRGV
SGPHASVAVSPRAARSALRGGGARVVVGTPQGGRSSGGGVHPKQPAVLRL
PGLLERDDTGEKAELSAVRPGLSPPSTRRALRSVAPPGGKPQAGRRWSFR
FGGRDRQGTSFREDMYTHATLAAVLEARGSQRKARVRHRKQPRRHRQGLT
LSSSSSSSSSCSLAHRSMPPPTVFCCVFFRGCPLLV*
back to top

mRNA from alignment at Ecto-sp13_S_contig15311:418..4198-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15311.3994.1 ID=mRNA_Ecto-sp13_S_contig15311.3994.1|Name=mRNA_Ecto-sp13_S_contig15311.3994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15311:418..4198- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGGACGGCGCTTGTCCCCGGGGGGGAGGACGTCGACGTGACGCTGG
ACAACGTCGGAGAGTTCGTGGAGGCGGTAACATCAAGGTGGGTCTTAGGG
GTCGGCAGGGCGGAGTCGTTTTGCCCCAGCTTTGAGAACAAGGCAGCAGC
GAAAACGCACCGGTCGGGTGGTGGGAGGCCCCTACGAGGGGCTTGCGTTG
TTCACAGACTGCAAAGTTGAAGCTTGGAGAAGGAGTCAGCCGCAAGAGGA
CCCGCTGGTCATTCGAGTCGTCTCTTCTGCCTCTCTGTTATTTAATTTGG
ATTTGCGTTTGTAGTAGTTTAAGTTGTTTTCTAGCCGTTGCTGCGCTCAG
CCCAACCGCCCCCGTCTGGGCCGCAAACACGTGCGTGCGTGCGTGCGTGC
GTGCGTGCTTCTCTCTGGTGAAATGCCAGGTGGCTGCACGCAGGGATCCT
GCCGCAGGCCGAAGCGTTCCGCGCTGGCTGCGCCGAGGTGTTTCCGGTGA
GCCCTTTGCACCTACGACCTACAACCCATGTACCTACCTCTTGTTGTTGG
TGTCTTGGTCGTAGACACCGCTGTGACCTCTACACCCGGATCCTCCTCGT
CCTCCCTGCGCCCAAAAAGGTTACATGTAGATACCACGAATGAAAATTGT
CCATGGTGACGGATTTGCCCAGCTACAATACCCAACGTATGGCAACGAAC
GACACAAACCCTTGAAATATCTCTAGCCAACCAAGCCATTTCCCCTTGTC
CCCGCTTCGCGTTGTAGGAAACGTGTACATGACTGACTTTATTTCAGAGG
AACATGTACACATACGAACACAGAAAGACTACCCGTTCGAGTTATGTTGT
AACCACAGTCGGAAGGGGTGTGTTCCAAGTCTTTATAGTGAGTGGAAGCA
AAACCGGCTGGACTACATGGCCTACTTGAGTCTGTTTGAGCCTCAAAACT
GAATTTTACCAGTGATGCCAACGGGTACCACCTACTGTAAGCCTCTCGAC
CTTGCCGACGCCATACCGTGCTCTCACGCTTGCCGGGGGATTGATTGGCT
GTAAAAAAAATTCCAACTCAGGTCCACATGCTTCGGTCGCTGTCAGCCCA
AGAGCTGCACGATCAGCTTTGCGGGGAGGAGGCGCTAGAGTGGTCGTTGG
AACACCTCAAGGAGGCCGTAGTTCCGGGGGCGGGGTACACCCGAAACAGC
CAGGTACGCATGGTATATGTGTAGTGCAGATGCTTTTGCGGGCTGGGCGG
GAGGGGGGCGGGGGCAGGGACCTGGGGGGAGACATGAGAGTGTAGGTGTA
AAAGAAGTTCGGGAGGCAACGAAGACAGCTAAAGAAGTACTTCTCTTTTG
ACAACGGCCCTCTGTGCACGGCCACGTGGGTGCAAAGCGGAGTCATGTAT
GCATTCGTGACTGGGTTTATGCGAAGTTAACCAAGGCAAAACGAAGGCAC
CTCTTGGACAAGAGCGCTTTGTTTTGTGCACGGTTACGACAGGAGGGTGC
AAAGAGGCGGGCGTCTGTATACATTACCACGTGCGTGACCTTCTGCCGTG
TTGCCCTGGCGGCAGAGATTGCGACGGTGGTATGCAATACATATATGTAG
GTTTACCTCTCTTGCTCTTGCTTGGACCGGAGCTGTCTATTTGCCCCCGA
TCACTGCGCGGCTACGGCGATCTCAATCGATCCCGTTCCTCCGCATCCTC
CGCTTTCAACGACGTCTTGTGGCGTGCGTGGTGGGTGGCTTGACTGGTCT
CTCTCTACCCCCCCGCAGCCGTTCTGCGACTTCCTGGCCTGCTTGAGCGA
GATGACACCGGCGAAAAAGCGGAGCTTTCTGCTGTTCGTCCTGGGTTGTC
CCCACCTTCCACCCGGAGGGCTCTGCGGTCTGTCGCCCCCCCTGGAGGTG
CGACCCGTTTGCTGTATTGCGTCGCCCGTATCCTGTTTTGATGTGTTGAA
GGAGAGGCAGGGCAGGGGGGGCAGGGGTGTTGCCACCGAGCAGAAGGATT
CTACCGTCTTTTTTTTTTTCGCCCCGCTTGTGTTGATTCGAGAGAGGAGG
GCTAGATGTACGGTACTTTCGTTTTGTATGGTTTTTTGTGAATACGAAGG
AGGTGGGCTAACGCGGTCTCATGTTGTTTTTGCCGGATGATCCGAGGGAC
ATGTTGCCTTAACCGGATGGTCGGAGGAATGTCGATTCTCAAGACTCGTC
TGAATAGAGAAGGCGTTTTGGCGCTTGTCTCGTGAGCGACACTCAAAATC
GTGGATCCTTCCCCACTCCCCCCGTCGAATCTGCCATCTGCCGTCCTCAC
TTGACGACTCGTTCGCCCGTCTGGCGTTTTGGACGCGGCTGGATCGATTT
GACACGATTGGCACCAGGTAAGCCGCAAGCAGGGCGCAGGTGGAGCTTTC
GCTTTGGAGGACGAGATCGACAGGGAACTTCCTTTCGCGAGGACATGTAC
ACACACGGTGAGAAGATAACAATATGACAAAAAGTCAGTCGAAAGACGCG
TGTACAAATACGTGAAGAAGAGAAGAAACACTCAAAATACCAAATGACGG
TCACGAATTTTGTTTCACGTTTTTTTGCTTTTGTTGGTGTCTCCAGACAA
AAAAAACATTTTAAAGTGTTTTCCTGCCGCCCTCCGTCAGTTTGTTTCCG
TCTTCTCGATCCGACCTGTTGCGTGGACAGCTGTTGCGCGCGCAGCTCCG
TGTGGTTGTTGTTGATATTTCTCTTTTTGTGTTTGTGCATGCAAGGTTTT
GCCTCTCTTGCGTGGTTGGTTAGGATCAGGTACGCTTGCCTGCCCATTCG
CCTGCCCGTCCCCCCCTGCCGGCCGGAGATCTGGTATCAAACGTAGGGAA
CTTCAGTAGCTCCTTGTCCTTCCCTACCGTCTCTTGGCAGCAAATTAAAG
GATGATGACCAGCTCTGGTTAATCCTTGTGAAACGTAAGCCTGGGCCGGC
GAAACGTTGTGTCCTGGCGTTGTACGGGCGCGAGGTCAATGGGCTAACGT
CTACGACATTCGTTTACATGAGCACACCCCCACCGACGCGTTGCTTGCTT
CTCGCCGTTTCCTCGCGGTGCCTGGGACTCTTACTGCTGTCGTTCTCCAG
CTACACTTGCCGCCGTACTCGAAGCGCGAGGTTCTCAACGAAAAGCTCGC
GTACGCCATCGAAAACAGCCAAGGCGTCATCGACAGGGACTGACCCTATC
CAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCTTGGCCCACAGAAGTATGC
CCCCCCCCACCGTTTTTTGTTGTGTTTTTTTCCGGGGTTGTCCGTTGTTG
GTGTGATGTTGTGGTGGTGAAAATCGTTCGAGGTGTGTGCAGACCCCCCA
AGACTCTCCGATTATGAGCGATAACTTGACTCCCGTATGGGAGAGAGAGG
CGGGGGAGGGGGGGGGGGGGAGCACGCGCGTTGCATGTTGTTACCGCGTT
GTAGTTCCACCCCGCAGAAAGACAGACGCGCAAAAAACAAGTAGCCCATT
TTGTTGGCTCTCCCCTCCCCCCTTGCGGTATGTATCTTGCCCACGGGATC
TGCTTATCCTTGCGAGTTTTCTTGTAGCCTCCTCTAAAAGGTTGTGTTTT
TGCCCCAGCCGAGACGGCGTTTTTGATTGGGGGGGAGGAGTGTGTGGTTG
TCAACAGTGAGCCGTGTGTGTTTGTGTTAGGTTATCTTTGTTTTTTGTCG
TCGTCTCAAATACTGCGGACGCTACGGGAAGAAGGGACGGATTCTTCTTA
CTTGACACGGATTATGATGCCGTGGGTAGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15311:418..4198-

>mRNA_Ecto-sp13_S_contig15311.3994.1 ID=mRNA_Ecto-sp13_S_contig15311.3994.1|Name=mRNA_Ecto-sp13_S_contig15311.3994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15311:418..4198- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGGACGGCGCTTGTCCCCGGGGGGGAGGACGTCGACGTGACGCTGG
ACAACGTCGGAGAGTTCGTGGAGGCGGTAACATCAAGGTGGCTGCACGCA
GGGATCCTGCCGCAGGCCGAAGCGTTCCGCGCTGGCTGCGCCGAGGTGTT
TCCGGTCCACATGCTTCGGTCGCTGTCAGCCCAAGAGCTGCACGATCAGC
TTTGCGGGGAGGAGGCGCTAGAGTGGTCGTTGGAACACCTCAAGGAGGCC
GTAGTTCCGGGGGCGGGGTACACCCGAAACAGCCAGCCGTTCTGCGACTT
CCTGGCCTGCTTGAGCGAGATGACACCGGCGAAAAAGCGGAGCTTTCTGC
TGTTCGTCCTGGGTTGTCCCCACCTTCCACCCGGAGGGCTCTGCGGTCTG
TCGCCCCCCCTGGAGGTAAGCCGCAAGCAGGGCGCAGGTGGAGCTTTCGC
TTTGGAGGACGAGATCGACAGGGAACTTCCTTTCGCGAGGACATGTACAC
ACACGCTACACTTGCCGCCGTACTCGAAGCGCGAGGTTCTCAACGAAAAG
CTCGCGTACGCCATCGAAAACAGCCAAGGCGTCATCGACAGGGACTGACC
CTATCCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCTTGGCCCACAGAAG
TATGCCCCCCCCCACCGTTTTTTGTTGTGTTTTTTTCCGGGGTTGTCCGT
TGTTGGTGTGA
back to top