mRNA_Ecto-sp13_S_contig15310.3993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15310.3993.1
Unique NamemRNA_Ecto-sp13_S_contig15310.3993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.020e-98
Identity = 162/202 (80.20%), Postives = 169/202 (83.66%), Query Frame = 1
Query:    1 MDCAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFVG--------RVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEE---VRSLGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLXXXXXXXXASIVSDDYEVIGCVADSQAARVMPVGPLAEATMSAEVG 573
            MDCA N  ETCGGFDALTLYEI SEAP TPAP TPPG XX   SPVV SGDYDFVG        RVMPVGPLAEDVMSAEICFGICSAQD+S THFGT+YGEE     SLGTTETS+ACTMDCA N+ ETCGGFDALS Y+IVAD  SPP+PAPTL  XXXXXXASIVSDDYEVIGCVAD+QAARVMPVGPLAE TMSAEVG
Sbjct:    1 MDCAGNTAETCGGFDALTLYEIASEAPPTPAPFTPPGXXXXXXSPVVPSGDYDFVGCVADSQSSRVMPVGPLAEDVMSAEICFGICSAQDDSNTHFGTQYGEECWCTGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADTSSPPTPAPTLPVXXXXXXASIVSDDYEVIGCVADNQAARVMPVGPLAEDTMSAEVG 202          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.660e-77
Identity = 136/189 (71.96%), Postives = 142/189 (75.13%), Query Frame = 1
Query:    7 CAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFV--------GRVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEEVRS--------LGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLXXXXXXXXASIVSDDYEVIGCVADSQAARV 525
            CA NA ETCGGFDALTLYEI+SEAP TPAP TPPGP  APASPVV SGDYDFV         RVMPVGPLAE VMSAEICFGICSAQD+SYTHFGT+YGEE  S          T ETSTAC   CA N  E CGGFDALS Y+IVADIPSPP+ APTL        ASIVSDDYEVIGCVAD+QAARV
Sbjct:  422 CAGNAGETCGGFDALTLYEIISEAPPTPAPLTPPGPMPAPASPVVPSGDYDFVDCVADSQSSRVMPVGPLAEAVMSAEICFGICSAQDDSYTHFGTQYGEEDLSGQPRPPPTAPTXETSTACVYPCAGNPEEICGGFDALSVYEIVADIPSPPTTAPTLPAPRTPAPASIVSDDYEVIGCVADNQAARV 610          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.740e-48
Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    7 CAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFVG--------RVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEE---VRSLGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLXXXXXXXXASIV--SDDYEVIGCVADSQAARVMPVGPLAEATMSAEVG 573
            C+ ++R  CG  D +++Y +          ST  G   +   PV +    +F+G        RVM  GP++ D MSAEIC GICS  D SYTHFGT+YG E     SLG+TETSTACTMDCA N  ETCGGFDAL+ Y+IV++  +PP+PAP     XXXXX S V  S DY+ +GCVADSQ++RVMPVGPL E  MSAEVG
Sbjct:   89 CSGDSRVLCGTDDHISVYSLDG--------STGGGDDDSGDPPVGS----EFIGCVADSQDDRVMAEGPMSADTMSAEICLGICSGMDASYTHFGTQYGNECWCTGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSE--APPTPAPFTPPGXXXXXXSPVVPSGDYDFVGCVADSQSSRVMPVGPLTEDVMSAEVG 276          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5JNN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.510e-26
Identity = 90/202 (44.55%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    4 DCAENARETCGGFDALTLYEIVSEAPLTPAPST-PPGPXXAPASPVVTSGDYDFVG--------RVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEEVRSLGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLXXXXXXXXAS-----IVSDDYEVIGCVADSQAARVMPVGPLAEATMSAE 567
            DCA NA E C GF+A+++YEI S   +T +P+  P   XX     VV S D + VG        RVMPVGPL+ + M+AE                     ++  SLG T++STAC  DCA N  E C GF+A+S Y+I A + + P+  PT XXXXXXXX       + SDDYE+IG VAD   ARVMPVGPL+   M+AE
Sbjct:  332 DCAGNAEEICSGFNAMSVYEIAS---VTTSPTDYPTXXXXXXXXXVVPSDDSELVGCVADFNGARVMPVGPLSSNAMTAE--------------------DDDGGSLGATQSSTACDYDCAGNADEICSGFNAMSVYEI-ASVTTSPADDPTXXXXXXXXXXXXXXXVVPSDDYELIGYVADFNGARVMPVGPLSSNAMTAE 509          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.030e-23
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    7 CAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFVGRVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEE---VRSLGTTETSTACTMDCAENNTETCGGFDAL 378
            C+ ++R  CG  D +++Y +          S  P P  +     V     D   RVM  GP++   MSAEIC GICS  D+SYTHFGT+YGEE     SLGTTETSTACT  CA N  ETCGGFDAL
Sbjct:  314 CSGDSRVLCGTDDHISVYSLDGSTGGGDDDSGDP-PVGSELIGCVADSQDD---RVMSEGPMSAATMSAEICLGICSEMDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDAL 436          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.240e-21
Identity = 61/152 (40.13%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  148 GDYDFVG--------RVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEE---VRSLGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLXXXXXXXXASIVSDDYEVIGCVADSQAARVMPVGPLAEATMSAEV 570
            GDY+ +G        RVM VGP+  D MSAEICF IC     + THFGT+YG E      LG +  ST CT DC  N  ETCGGFD ++ Y I    PS                     D Y  IGC+AD    R+M    +    MSAE+
Sbjct:  304 GDYELIGCRVDDREARVMSVGPIEGDAMSAEICFDICRELHPTSTHFGTQYGNECFCTDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRIAGSEPS-------------------AGDGYVSIGCLADKNGDRIMDRRMVTSIPMSAEI 436          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.210e-15
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    7 CAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFVGRV 174
            CA NA ETCGGFDALTLYEI+SEAP TPAP TPPG XX    PVV SGDYDFV  V
Sbjct:  407 CAGNAGETCGGFDALTLYEIISEAPPTPAPLTPPGXXXXXXXPVVPSGDYDFVDCV 462          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.260e-14
Identity = 48/139 (34.53%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    7 CAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPXXAPASPVVTSGDYDFVG--------RVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEEV----RSLGTTETSTACTMDCAENNTETCGGFDALSGY 387
            C+ +A ETCGGF+A+++Y   S+   TP P             V+   D  ++G        R+ PV   A DVM+   C   C+     Y ++GT+YGEE         T   ST C  DC+ +  ETCGGF+A+S Y
Sbjct:   42 CSGDAGETCGGFNAMSVYSTGSDPVETPTPVA-----------VIEPTDPTYLGCYVDSQTDRIFPV-TTASDVMTLAFCADFCA----EYAYYGTQYGEECWCGNSGYDTLGESTDCNYDCSGDADETCGGFNAMSVY 164          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A6H5KH26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH26_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.280e-12
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  292 SLGTTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSP---PSPAP-TLXXXXXXXXASIVSDDYEVIGCVADSQAARV 525
            SLGTTETSTACT  CA N  ETCGGFDALS Y IV+    P   P+PAP T XXXXX     I S D+E+IGCVAD Q   V
Sbjct:   11 SLGTTETSTACTYPCAGNPGETCGGFDALSLYKIVSVTTPPTDDPTPAPLTXXXXXXTAEPVIPSGDFELIGCVADDQGNNV 92          
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Match: A0A8E2E8P2_9PEZI (WSC-domain-containing protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2E8P2_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 1.330e-10
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 1
Query:    1 MDCAENARETCGGFDALTLYEIVSE--APLTPAPSTPPGPXXAPASPVVTS--------GDYDFV--GRVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEE------VRSLGTTETSTACTMDCAENNTETCGGFDALSGYDI 393
            M CA N+ ETCGG D L ++   +   +  T A ++   P      PVV +        G Y+ V  GR + V  +A + M+ E+C   CS      T+FG +YG E      + S     T   C+M CA N  E CGG   LS Y +
Sbjct: 1249 MPCAGNSAETCGGSDFLNMWYTNNTVTSTFTTATASTTAPITTMTGPVVVASVGNYLSIGCYNEVPNGRALTVKSVANNSMTVELCAAFCSGT----TYFGVEYGAECYCGNTIPSTSALVTDGRCSMTCANNTKEICGGPSGLSMYQV 1393          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15310.3993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL81_ECTSI3.020e-9880.20WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K566_9PHAE1.660e-7771.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F7_ECTSI4.740e-4851.98WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JNN6_9PHAE1.510e-2644.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6V8_9PHAE5.030e-2348.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ76_9PHAE2.240e-2140.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K384_9PHAE2.210e-1576.79WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K223_9PHAE8.260e-1434.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH26_9PHAE2.280e-1262.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8E2E8P2_9PEZI1.330e-1032.89WSC-domain-containing protein n=1 Tax=Lepidopterel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15310contigEcto-sp13_S_contig15310:908..3020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start1
Seed ortholog score62.4
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog31870.EFQ36144
Model size573
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Wsc domain-containing protein
EggNOG OGs1F0CY@1028384,216U7@147550,39RW7@33154,3NW6X@4751,3QQIF@4890,KOG4157@1,KOG4157@2759
Ec32 ortholog descriptionWSC domain containing protein
Ec32 orthologEc-00_002540.1
Cds size573
COG Functional cat.GO
Best tax levelGlomerellales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.061727-CDS-Ecto-sp13_S_contig15310:907..10781681462815.061727-CDS-Ecto-sp13_S_contig15310:907..1078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15310 908..1078 +
1681462815.0739202-CDS-Ecto-sp13_S_contig15310:1583..16281681462815.0739202-CDS-Ecto-sp13_S_contig15310:1583..1628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15310 1584..1628 +
1681462815.0845604-CDS-Ecto-sp13_S_contig15310:1842..19151681462815.0845604-CDS-Ecto-sp13_S_contig15310:1842..1915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15310 1843..1915 +
1681462815.0949028-CDS-Ecto-sp13_S_contig15310:2273..25061681462815.0949028-CDS-Ecto-sp13_S_contig15310:2273..2506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15310 2274..2506 +
1681462815.1049643-CDS-Ecto-sp13_S_contig15310:2969..30201681462815.1049643-CDS-Ecto-sp13_S_contig15310:2969..3020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15310 2970..3020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15310.3993.1prot_Ecto-sp13_S_contig15310.3993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15310 908..3020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15310.3993.1

>prot_Ecto-sp13_S_contig15310.3993.1 ID=prot_Ecto-sp13_S_contig15310.3993.1|Name=mRNA_Ecto-sp13_S_contig15310.3993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MDCAENARETCGGFDALTLYEIVSEAPLTPAPSTPPGPTPAPASPVVTSG
DYDFVGRVMPVGPLAEDVMSAEICFGICSAQDNSYTHFGTKYGEEVRSLG
TTETSTACTMDCAENNTETCGGFDALSGYDIVADIPSPPSPAPTLPNPPT
PAPASIVSDDYEVIGCVADSQAARVMPVGPLAEATMSAEVG
back to top

mRNA from alignment at Ecto-sp13_S_contig15310:908..3020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15310.3993.1 ID=mRNA_Ecto-sp13_S_contig15310.3993.1|Name=mRNA_Ecto-sp13_S_contig15310.3993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15310:908..3020+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGCGCTGAAAACGCTCGCGAAACCTGCGGTGGCTTCGACGCCCT CACTCTGTACGAAATCGTCTCCGAAGCCCCTCTTACGCCGGCGCCCTCGA CTCCCCCCGGACCCACGCCCGCGCCGGCCAGTCCCGTTGTCACTTCCGGC GACTACGACTTCGTCGGGCGTGTTGCCGACAGCCAATCCTCTAGGATGAG ACGAAGAGGAGAGATCAATCGAGGTAAGAGGTTTCGCCGTGGGTGAGAAG TTGTACACTAGACAACTCTCGCCTCACGCTTGTAGAGAATACGGATGAGC TACAGAAGGGAGTGGGGGGTATCTCGCCAATGTTGTTGTTGGGGAGCGTG GCAGCGAGAGAGGAAGAGAGAGTAACAGAGAAAAAGAGAAAATTACACGC CAGCAGTATTGAGCCTTGATTCCTGTGGGAGAAAACGAACAGCCACTGAA TGTAGAGTAGTCGATAGGGTAGAGTTCTTGAGCACCTGTTGTTAAAGGTC AAGTTTTTCAGCGCCTCTTTCTTGTGCTCGAACTTCGTCACTTCCCGGCT TTCAGTTGGCAGCGCTTCCTACAACACAGCTGTACTGCCGCCCTCTACAG GGCTGGTGTTTATCGACATCGCACGCGCGTATCTTCTCCTTCCGATTCTT ACACGCCTTGTTTTCTCGAAAGGTAGGTGATGCCTGTGGGGCCACTTGCG GAGGACGTCATGTCTGCGGAGGTAGGTGTTGCGGATAGCGGAGAGATCCA TACTGTTCATGATTTTGACGAGGTATTTAGGTTTTGTTTGACACTCCCGT AGCTTTTCAAAGGAGCCTACGATCTCGTACGGCTTCGCGTGGGCAGGTGC TGTGCTCTTTCCTCGTTCGCGCGTAGATTAGTTGTGGCCCCCTGCTCCTC CTTATTCCCTCCGAAAATATGGTTTTCCTTCCCAGATCTGCTTTGGAATT TGCTCTGCCCAAGACAACTCGTACACCCATTTCGGCACCAAGTACGGGGA AGAGGTGCGTGACGTCGGCTGGAGGTTGTCTTTGACATTGGTGGTACTGC TGGTGTTGCTGGCGTCGTTGCCTTGGGTGCTGCTCCTGATGATTGTATTC TGGCCTTGCTCGATTCAAGTACTGCAGACATGAGACGCCTCTAGCACGCG ATTGACCACCAGATTTCATCCTGCCAACTCACGTCACTCCGTTGGGCATA AGTCAAGCGGTGCTTGACACAAACCAGCCTCCGACGATTGACCAAACGCA GTTTTCCCACCCGATTCGCGCATTTTCATTAACCGAAGTCCTCTTCTTCT TCCCTCCTGCTTTCGCACCCCCCAACCCCCCAAAACCGATGTCTCGTCCT CCGTGCTGGTACACAGGATCGCTCGGAACGACGGAGACCTCCACCGCCTG CACCATGGACTGCGCTGAAAACAATACGGAGACCTGCGGCGGCTTTGACG CCCTTTCCGGGTACGACATCGTCGCCGACATCCCTTCCCCTCCTTCGCCC GCGCCGACCCTCCCCAACCCCCCCACGCCCGCGCCGGCCAGCATCGTCTC CGACGACTACGAGGTCATCGGATGTGTGGCCGACAGCCAAGCCGCCAGGG TGAGAATGGAACAAGTGGTTGTCTTTGGTGTCCTTGGTGCGGCAATGTTG AAGCGTTACTACCTGTGCCACGACCGGCTATGGTGTCCAATGTAATGTCC CTGAGTGCTCAGTCTACACAACCGTTGAGCGAGGTTTTCTTGCTTAACAC ATGCGAACAATGGCGTGATGGGAGGTGAAGGCGCGCTACCGCAGTTGTCT CACTCGGGTTTCATATCCGAGTAAGAAGATTGTGGAACCTGTGGTCTTGT GTGAACGACTGCGTTGCCACTCAAGACCGATATCATGTACACTGCACACG AGTGATCCGCGACGTCCGGGCCACCCCCTCATGACTCTGAACAGTAAGTT GCTGACATGTCCCCAAGCTTGACCGACTTTGCTTGGTATGAGCTGCCCAT TCCGGTGTTGTCCTGTTTTTTCATTATATTTCCTCCCCCATGCCGTATTG TTCGGATCATAGGTGATGCCGGTGGGACCTTTGGCGGAGGCTACCATGTC CGCGGAGGTGGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15310:908..3020+

>mRNA_Ecto-sp13_S_contig15310.3993.1 ID=mRNA_Ecto-sp13_S_contig15310.3993.1|Name=mRNA_Ecto-sp13_S_contig15310.3993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15310:908..3020+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGCGCTGAAAACGCTCGCGAAACCTGCGGTGGCTTCGACGCCCT
CACTCTGTACGAAATCGTCTCCGAAGCCCCTCTTACGCCGGCGCCCTCGA
CTCCCCCCGGACCCACGCCCGCGCCGGCCAGTCCCGTTGTCACTTCCGGC
GACTACGACTTCGTCGGGCGTGTGATGCCTGTGGGGCCACTTGCGGAGGA
CGTCATGTCTGCGGAGATCTGCTTTGGAATTTGCTCTGCCCAAGACAACT
CGTACACCCATTTCGGCACCAAGTACGGGGAAGAGGTGCGATCGCTCGGA
ACGACGGAGACCTCCACCGCCTGCACCATGGACTGCGCTGAAAACAATAC
GGAGACCTGCGGCGGCTTTGACGCCCTTTCCGGGTACGACATCGTCGCCG
ACATCCCTTCCCCTCCTTCGCCCGCGCCGACCCTCCCCAACCCCCCCACG
CCCGCGCCGGCCAGCATCGTCTCCGACGACTACGAGGTCATCGGATGTGT
GGCCGACAGCCAAGCCGCCAGGGTGATGCCGGTGGGACCTTTGGCGGAGG
CTACCATGTCCGCGGAGGTGGGT
back to top